View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2287_low_9 (Length: 231)

Name: NF2287_low_9

Description: NF2287

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2287_low_9

[»] chr3 (1 HSPs)

[»] chr7 (1 HSPs)

Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 158; E-Value: 3e-84

Query Start/End: Original strand, 49 - 214

Target Start/End: Original strand, 28762787 - 28762952

Alignment:

Q	49	cccattgacatccatatccaggaccaagcatcagaagagttcgaagtcacctttccttccaccgcctacaacaactcttccaaaaacataaactcctcca	148	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28762787	cccattgacatccatatccaggaccaagcatcagaagagttcgaagtcacctttccttccaccgcctgcaacaactcttccaaaaacataaactcctcca	28762886	T

Q	149	tccacaactccctcttccacctaaaaacgcactcccacctgtctcccacccaatacccaatatctg	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	28762887	tccacaactccctcttccacctaaaaacgcactcccacctgtctcccacccaataccccatatctg	28762952	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 161 - 213

Target Start/End: Original strand, 27876837 - 27876888

Alignment:

Q	161	tcttccacctaaaaacgcactcccacctgtctcccacccaatacccaatatct	213	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	27876837	tcttccaccttaaaacccactccc-cctatctcccacccaataccccatatct	27876888	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]