View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2288_high_3 (Length: 510)
Name: NF2288_high_3
Description: NF2288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2288_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 21 - 499
Target Start/End: Original strand, 37129490 - 37129966
Alignment:
| Q |
21 |
tgagttttatcacttgaacaaagatgaagatgagtagtgttgttgtatgtactatcaagttatagttggagcaatctttgttgtgttgcagttcgacctt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37129490 |
tgagttttatcacttgaacaaagatgaagatgagtagtgttgttgtatgtactatcaagtta--gttggaacaatctttgttgtgttgcagttcgacctt |
37129587 |
T |
|
| Q |
121 |
cttttctccaactactctggagttgtagctgttgctgcaaaacatgttgcttgcatagagaaggagagacatgctctccttgtgttgaaggcaagccttg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
37129588 |
cttttctccaactactctggagttgtagctgttgcggcaaaacatgttgcttgcatacagaaggagagacatgctctccttgagttgaaggcaagctttg |
37129687 |
T |
|
| Q |
221 |
tgttggatgactctaaccttttgccttcttgggacagtaaaagtgatggttgttgtgcatgggaaggaataggttgtagcaatcaaactggtcatgttga |
320 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37129688 |
tgttggatgactctaaccttttgcaatcttgggacagtaaaagtgatggttgctgtgcatgggaaggaataggttgtagcaatcaaactggtcatgttga |
37129787 |
T |
|
| Q |
321 |
aatgcttgatctaaacggcgatcaggttattccttttagaggcaagatcaacagatcagtgattgatttgcagaatttaaagtatttgaatctcagtttt |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37129788 |
aatgcttgatctaaacggcgatcaggttattccttttagaggcaagatcaacagatcagtgattgatttgcagaatttaaagtatttgaatctcagtttt |
37129887 |
T |
|
| Q |
421 |
aattgaatgtcaaacgataattttccagaattatttggttcactaagaaacttgagattccttgacctccaaagttcat |
499 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37129888 |
aatcgaatgtcaaacgataattttccagaattatttggttcactaagaaacttgagattccttgacctccaaagttcat |
37129966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 171 - 491
Target Start/End: Original strand, 37143936 - 37144256
Alignment:
| Q |
171 |
ttgcatagagaaggagagacatgctctccttgtgttgaaggcaagccttgtgttggatgactctaaccttttgccttcttgggacagtaaaagtgatggt |
270 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| | |||||| |||| | ||||| || || || ||||||||| ||||||||||||| | ||||||| |
|
|
| T |
37143936 |
ttgcaaagagaatgagagacatgctctccttgagctgaaggaaagcatggtgttatataacacttctcttttgcctacttgggacagtaagattgatggt |
37144035 |
T |
|
| Q |
271 |
tgttgtgcatgggaaggaataggttgtagcaatcaaactggtcatgttgaaatgcttgatctaaacggcgatcaggttattccttttagaggcaagatca |
370 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| || || ||||||||||| |||||||| |
|
|
| T |
37144036 |
tgttgtgcatgggaaggaatcacgtgcagcaatcaaactggtcatgttgaaattcttgatctaaacggcgattagtttggtccttttagagacaagatca |
37144135 |
T |
|
| Q |
371 |
acagatcagtgattgatttgcagaatttaaagtatttgaatctcagttttaattgaatgtcaaacgataattttccagaattatttggttcactaagaaa |
470 |
Q |
| |
|
|| |||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || |||||||| |
|
|
| T |
37144136 |
acgcatcattgattaatttgcagcatttaaagtatttgaatctcagttttaatcagatgtcaaacaataattttccagaattatttggctctctaagaaa |
37144235 |
T |
|
| Q |
471 |
cttgagattccttgacctcca |
491 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
37144236 |
cttgagattccttgacctcca |
37144256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 147 - 489
Target Start/End: Original strand, 37136770 - 37137112
Alignment:
| Q |
147 |
agctgttgctgcaaaacatgttgcttgcatagagaaggagagacatgctctccttgtgttgaaggcaagccttgtgttggatgactctaaccttttgcct |
246 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| | || || || ||||||||||| |
|
|
| T |
37136770 |
agctgttgctgaaaaacatgttggttgcatagagaaggagagacatgctctccttgagttgaaggcaagccttgtcgtcgaagatacttaccttttgcct |
37136869 |
T |
|
| Q |
247 |
tcttgggacagtaaaagtgatggttgttgtgcatgggaaggaataggttgtagcaatcaaactggtcatgttgaaatgcttgatctaaacggcgatcagg |
346 |
Q |
| |
|
| ||||| ||||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
37136870 |
acctgggatagtaagagtgattgttgttgtgcatgggaaggaatcacatgtagcaatcaaactggccatgttgaaatgcttgatctaaatggcgatcagt |
37136969 |
T |
|
| Q |
347 |
ttattccttttagaggcaagatcaacagatcagtgattgatttgcagaatttaaagtatttgaatctcagttttaattgaatgtcaaacgataattttcc |
446 |
Q |
| |
|
|| ||||||| |||| |||| |||| |||| |||||||||||||| |||||||||||||||| ||| || ||| | ||||| | || |||| |
|
|
| T |
37136970 |
ttggtccttttcgaggtgagattaacatatcattgattgatttgcagcatttaaagtatttgaacctctcttggaatctgttaacaaacagtgatattcc |
37137069 |
T |
|
| Q |
447 |
agaattatttggttcactaagaaacttgagattccttgacctc |
489 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
37137070 |
agaattatttggttctctaagcaacttgagattccttgacctc |
37137112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 83 - 499
Target Start/End: Original strand, 37162281 - 37162706
Alignment:
| Q |
83 |
tagttggagcaatctttgttgtgttgcagttcgaccttcttttctccaactactctggagttgtagctgttgctgcaaaacatgttgc------------ |
170 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | ||||||| |||||||| | ||||| ||| | ||| ||||||||||||||| |
|
|
| T |
37162281 |
tagttggagcaatctttgttctgttgcagttcggctttcttttgtccaactattatggagctgtgg---ttgatgcaaaacatgttgcctctgtttctgg |
37162377 |
T |
|
| Q |
171 |
---ttgcatagagaaggagagacatgctctccttgtgttgaaggcaagccttgtgttggatgactctaaccttttgccttcttgggacagtaaaagtgat |
267 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||| ||||| |
|
|
| T |
37162378 |
tggttgtatagagaaggagagacatgctctccttgagttgaaggccagccttgtgttggatgatgctaaccttttgtctacttgggacagtaagagtga- |
37162476 |
T |
|
| Q |
268 |
ggttgttgtgcatgggaaggaataggttgtagcaatcaaactggtcatgttgaaatgcttgatctaaacggcgatcaggttattccttttagaggcaaga |
367 |
Q |
| |
|
|||||||||||| ||| | | |||||||||||||||||||| |||||||||| |||| |||||||||| |||| || ||||||| ||||||||| |
|
|
| T |
37162477 |
--atgttgtgcatggaaagaagtcggttgtagcaatcaaactggccatgttgaaaagcttcatctaaacggttttcagtttggtccttttcgaggcaaga |
37162574 |
T |
|
| Q |
368 |
tcaacagatcagtgattgatttgcagaatttaaagtatttgaatctcagttttaattgaatgtcaaacgataattttccagaattatttggttcactaag |
467 |
Q |
| |
|
|||||| |||| |||| || |||| |||||||||||||||| ||| | | | | | |||||| || |||| ||||||||||||||||| |||| |
|
|
| T |
37162575 |
tcaacacatcattgatggagttgcgacatttaaagtatttgaacctcggatggagtacgttttcaaacaatgatttcccagaattatttggttctttaag |
37162674 |
T |
|
| Q |
468 |
aaacttgagattccttgacctccaaagttcat |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
37162675 |
caacttgagattccttgacctccaaagttcat |
37162706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 171 - 335
Target Start/End: Original strand, 38745420 - 38745584
Alignment:
| Q |
171 |
ttgcatagagaaggagagacatgctctccttgtgttgaaggcaagccttgtgttggatgactctaaccttttgccttcttgggacagtaaaagtgatggt |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| || | ||||||||||||||| || ||||||| ||||||||||||| ||| ||||||| | |
|
|
| T |
38745420 |
ttgcatagagaaggagagacatgctctccttgagttgaagtcaggtcttgtgttggatgacacttaccttttaccttcttgggacactaagagtgatgat |
38745519 |
T |
|
| Q |
271 |
tgttgtgcatgggaaggaataggttgtagcaatcaaactggtcatgttgaaatgcttgatctaaa |
335 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
38745520 |
tgttgtgcatgggaaggaattggttgtaggaatcaaactggccatgttgaaatacttgatctaaa |
38745584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 362
Target Start/End: Complemental strand, 35145138 - 35144858
Alignment:
| Q |
83 |
tagttggagcaatctttgttgtgttgcagttcgaccttcttttctccaactactctggagttgtagctgttgctgcaaaacatgttgctt------gcat |
176 |
Q |
| |
|
|||||||| |||||| ||| |||||||||| || |||||||| |||||||| | ||||||||||| || |||||||||||| || |||| |
|
|
| T |
35145138 |
tagttggaacaatctatgtattgttgcagttagagcttcttttgtccaactattgtggagttgtagttg------caaaacatgttggtttaggttgcat |
35145045 |
T |
|
| Q |
177 |
agagaaggagagacatgctctccttgtgttgaaggcaagccttgtgttggatgactctaac----cttttgccttcttgggacagtaaaagtgatggttg |
272 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| |||||||| ||| ||| || || || ||| |||| ||||| ||||| || ||| || |
|
|
| T |
35145044 |
agagaaggagagacatggtctcctacagttgaaggctggccttgtggcggaagacacttacttacctattgtcttcgtgggagagtaagagagat---tg |
35144948 |
T |
|
| Q |
273 |
ttgtgcatgggaaggaataggttgtagcaatcaaactggtcatgttgaaatgcttgatctaaacggcgatcaggttattccttttagagg |
362 |
Q |
| |
|
||||| |||| |||| | | |||||||||||||||||| ||||||||| |||||||| |||| ||||||||| || ||||||| |||| |
|
|
| T |
35144947 |
ttgtgaatggaaaggggtcgtttgtagcaatcaaactggccatgttgaagtgcttgatgtaaatggcgatcagtttggtccttttcgagg |
35144858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 499
Target Start/End: Original strand, 38745627 - 38745731
Alignment:
| Q |
395 |
atttaaagtatttgaatctcagttttaattgaatgtcaaacgataattttccagaattatttggttcactaagaaacttgagattccttgacctccaaag |
494 |
Q |
| |
|
|||||||||||||||| ||||||| ||| | |||||| | |||| |||||||||||||||| ||||||||||||||||| |||||||||||| | |
|
|
| T |
38745627 |
atttaaagtatttgaacctcagttggaatctgttttcaaacagttatttcccagaattatttggttttctaagaaacttgagatttcttgacctccaagg |
38745726 |
T |
|
| Q |
495 |
ttcat |
499 |
Q |
| |
|
||||| |
|
|
| T |
38745727 |
ttcat |
38745731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 171 - 499
Target Start/End: Complemental strand, 3025396 - 3025068
Alignment:
| Q |
171 |
ttgcatagagaaggagagacatgctctccttgtgttgaaggcaagccttgtgttggatgactctaaccttttgccttcttgggacagtaaaagtgatggt |
270 |
Q |
| |
|
||||||||||||||||||||| || ||||||| ||||||| || | |||||||||||| || || ||||||| ||||||||||||||||| ||||||| | |
|
|
| T |
3025396 |
ttgcatagagaaggagagacaagcactccttgagttgaagtcaggtcttgtgttggataacacttaccttttaccttcttgggacagtaagagtgatgat |
3025297 |
T |
|
| Q |
271 |
tgttgtgcatgggaaggaataggttgtagcaatcaaactggtcatgttgaaatgcttgatctaaacggcgatcaggttattccttttagaggcaagatca |
370 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||| ||||||||||| ||||||||||| || |||||| || ||||||| |||| | |||| |
|
|
| T |
3025296 |
tgttgtgcatgggaaggaattggttgtagcaatgaaactggccatgttgaaatacttgatctaaatggtgatcagtttggtccttttgtaggcgacatca |
3025197 |
T |
|
| Q |
371 |
a-cagatcagtgattgatttgcagaatttaaagtatttgaatctcagttttaattgaatgtcaaacgataattttccagaattatttggttcactaagaa |
469 |
Q |
| |
|
| ||| || |||| || |||| | |||||||||||||||| ||||||| ||| | |||||| | |||| ||||||||||||||||| ||||||| |
|
|
| T |
3025196 |
atgaga-cattgatcgagttgcggcatttaaagtatttgaacctcagttggaatctgttttcaaacagttatttcccagaattatttggttctctaagaa |
3025098 |
T |
|
| Q |
470 |
acttgagattccttgacctccaaagttcat |
499 |
Q |
| |
|
|||||||||| ||||| |||||| |||||| |
|
|
| T |
3025097 |
acttgagatttcttgatctccaaggttcat |
3025068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University