View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2288_high_5 (Length: 362)
Name: NF2288_high_5
Description: NF2288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2288_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 28451936 - 28452227
Alignment:
| Q |
18 |
attttacagttataaaatccatatttcttgnnnnnnnn-ttattcttcttggaacgtccttcatctttcttggaagcttgatcctccaaataattttttc |
116 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28451936 |
attttacagttataaaatccatatttcttgaaaaaaaaattattcttcttggaacgtccttcatctttcttggaagcttgatcctcccaataattttttc |
28452035 |
T |
|
| Q |
117 |
ctttgtttgcatactgagctagcaaagcttgatatgatgtaaaatctttggaattttccttgtttctatcagttaacctcaattcatgagcttcaagact |
216 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28452036 |
ctttctttgcatactgagctagcaaagcttgatatgatgtaaaatctttggaattttccttgtttctatcagttaacctcaattcatgagcttcaagact |
28452135 |
T |
|
| Q |
217 |
tgcctgcaattcttcaatcttgatcacatccaaatctttggattcttctaacgccacaacaatatgatcaaaacttaaggtcaaggttctga |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||| |
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| T |
28452136 |
tgcctgcaattcttcaatcttgatcacatccaaatctttggattcttctaagactacaacaatatgatcaaaccttggtgtcaaggttctga |
28452227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 122 - 267
Target Start/End: Complemental strand, 33050127 - 33049982
Alignment:
| Q |
122 |
tttgcatactgagctagcaaagcttgatatgatgtaaaatctttggaattttccttgtttctatcagttaacctcaattcatgagcttcaagacttgcct |
221 |
Q |
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|||| ||| |||||| |||||||||||| | ||| | || ||||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| ||||| | |
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| T |
33050127 |
tttgtatattgagcttgcaaagcttgatctaatgcagaacctttggatttttctttgttcctatcggttaacctcaattcatgtgcttcaaggcttgctt |
33050028 |
T |
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| Q |
222 |
gcaattcttcaatcttgatcacatccaaatctttggattcttctaa |
267 |
Q |
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| | |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33050027 |
gaagttcttcaatcttcatcacatccaaatctttggattcttctaa |
33049982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 338
Target Start/End: Complemental strand, 9504603 - 9504447
Alignment:
| Q |
182 |
ctatcagttaacctcaattcatgagcttcaagacttgcctgcaattcttcaatcttgatcacatccaaatctttggattcttctaacgccacaacaatat |
281 |
Q |
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|||||| | |||||||||||||| |||||||||||| |||||| ||| || ||||| || ||| || ||||| ||||| |||| ||||| ||||| | |
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| T |
9504603 |
ctatcaatcaacctcaattcatgtgcttcaagactttcctgcagttcctctatcttcatagaatctaagtctttagattcctctagggccactacaatgt |
9504504 |
T |
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| Q |
282 |
gatcaaaacttaaggtcaaggttctgagaacctgttctatcttcatcaaatcagtga |
338 |
Q |
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| T |
9504503 |
gatcaaatcttgatgttaaggttttgagaaccttttccaccttcatcacatcagtga |
9504447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 338
Target Start/End: Original strand, 16847047 - 16847203
Alignment:
| Q |
182 |
ctatcagttaacctcaattcatgagcttcaagacttgcctgcaattcttcaatcttgatcacatccaaatctttggattcttctaacgccacaacaatat |
281 |
Q |
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|||||| | |||||||||||||| |||||||||||||| |||| || || ||||| || ||| |||||||| ||||| |||| ||||| ||||| | |
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| T |
16847047 |
ctatcaatcaacctcaattcatgtgcttcaagacttgcttgcagctcctctatcttcatagaatctaaatctttagattcctctagggccactacaatgt |
16847146 |
T |
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| Q |
282 |
gatcaaaacttaaggtcaaggttctgagaacctgttctatcttcatcaaatcagtga |
338 |
Q |
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||||||| || | || |||||||||||||||| ||| | |||||||| |||||||| |
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|
| T |
16847147 |
gatcaaattttgatgttaaggttctgagaaccttttccaccttcatcacatcagtga |
16847203 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 338
Target Start/End: Original strand, 21793669 - 21793825
Alignment:
| Q |
182 |
ctatcagttaacctcaattcatgagcttcaagacttgcctgcaattcttcaatcttgatcacatccaaatctttggattcttctaacgccacaacaatat |
281 |
Q |
| |
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|||||| | ||||| || ||||| ||||||||||||||||||| ||| || ||||| || ||| || ||||| ||||| |||| ||||| ||||| | |
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| T |
21793669 |
ctatcaatcaaccttaactcatgtgcttcaagacttgcctgcagttcctctatcttcatagaatctaagtctttagattcctctagggccactacaatgt |
21793768 |
T |
|
| Q |
282 |
gatcaaaacttaaggtcaaggttctgagaacctgttctatcttcatcaaatcagtga |
338 |
Q |
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||||||| ||| | || |||||||||||||||| ||| | |||||||| |||||||| |
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| T |
21793769 |
gatcaaatcttgatgttaaggttctgagaaccttttccaccttcatcacatcagtga |
21793825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 338
Target Start/End: Original strand, 45503974 - 45504130
Alignment:
| Q |
182 |
ctatcagttaacctcaattcatgagcttcaagacttgcctgcaattcttcaatcttgatcacatccaaatctttggattcttctaacgccacaacaatat |
281 |
Q |
| |
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|||||| | ||||| || ||||| ||||||||||||||||||| ||| || ||||| || ||| || ||||| ||||| |||| ||||| ||||| | |
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| T |
45503974 |
ctatcaatcaaccttaactcatgtgcttcaagacttgcctgcagttcctctatcttcatagaatctaagtctttagattcctctagggccactacaatgt |
45504073 |
T |
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| Q |
282 |
gatcaaaacttaaggtcaaggttctgagaacctgttctatcttcatcaaatcagtga |
338 |
Q |
| |
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||||||| ||| | || |||||||||||||||| ||| | |||||||| |||||||| |
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| T |
45504074 |
gatcaaatcttgatgttaaggttctgagaaccttttccaccttcatcacatcagtga |
45504130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 338
Target Start/End: Original strand, 45496232 - 45496388
Alignment:
| Q |
182 |
ctatcagttaacctcaattcatgagcttcaagacttgcctgcaattcttcaatcttgatcacatccaaatctttggattcttctaacgccacaacaatat |
281 |
Q |
| |
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|||||| | ||||| || ||||| ||||||||||||||||||| || || ||||| || ||| || ||||| ||||| |||| ||||| ||||| | |
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| T |
45496232 |
ctatcaatcaaccttaactcatgtgcttcaagacttgcctgcagctcctctatcttcatagaatctaagtctttagattcctctagggccactacaatgt |
45496331 |
T |
|
| Q |
282 |
gatcaaaacttaaggtcaaggttctgagaacctgttctatcttcatcaaatcagtga |
338 |
Q |
| |
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||||||| ||| | || |||||||||||||||| ||| | |||||||| |||||||| |
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|
| T |
45496332 |
gatcaaatcttgatgttaaggttctgagaaccttttccaccttcatcacatcagtga |
45496388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 338
Target Start/End: Complemental strand, 5984387 - 5984231
Alignment:
| Q |
182 |
ctatcagttaacctcaattcatgagcttcaagacttgcctgcaattcttcaatcttgatcacatccaaatctttggattcttctaacgccacaacaatat |
281 |
Q |
| |
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|||||| | |||||||||||||| |||||||||||||| || | ||| || ||||| || ||| || ||||| ||||| |||| ||||| ||||| | |
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|
| T |
5984387 |
ctatcaatcaacctcaattcatgtgcttcaagacttgcatgtagttcctctatcttcatagaatctaagtctttagattcctctagggccactacaatgt |
5984288 |
T |
|
| Q |
282 |
gatcaaaacttaaggtcaaggttctgagaacctgttctatcttcatcaaatcagtga |
338 |
Q |
| |
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||||||| ||| | || |||||| ||||||| | ||| | |||||||| |||||||| |
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|
| T |
5984287 |
gatcaaatcttgatgttaaggttatgagaactttttccaccttcatcacatcagtga |
5984231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 337
Target Start/End: Original strand, 7500548 - 7500703
Alignment:
| Q |
182 |
ctatcagttaacctcaattcatgagcttcaagacttgcctgcaattcttcaatcttgatcacatccaaatctttggattcttctaacgccacaacaatat |
281 |
Q |
| |
|
|||||| | ||||| || ||||| |||||||||||||| |||| ||| || ||||| | ||| || ||||| ||||| ||| ||||| ||||| | |
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| T |
7500548 |
ctatcaatcaaccttaactcatgtgcttcaagacttgcttgcagttcctctatcttcgtagaatctaagtctttagattcccctagggccactacaatgt |
7500647 |
T |
|
| Q |
282 |
gatcaaaacttaaggtcaaggttctgagaacctgttctatcttcatcaaatcagtg |
337 |
Q |
| |
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||||||| ||| | || |||||||||||||||| ||| | |||||||| ||||||| |
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| T |
7500648 |
gatcaaatcttgatgttaaggttctgagaaccttttccaccttcatcacatcagtg |
7500703 |
T |
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