View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2288_low_10 (Length: 329)
Name: NF2288_low_10
Description: NF2288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2288_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 20129142 - 20128840
Alignment:
| Q |
18 |
aataaagggtttgttggtagactattgtgtcatcctctaacattgcactcgaaggactacaacatggatattcaaataatctgctctatgtttgtgttag |
117 |
Q |
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| T |
20129142 |
aataaagggtttgttggtagactattgtgtcatcctctaacattgcactcgaaggactacaacatggatattcaaataatctgctctatgtttgtgttag |
20129043 |
T |
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| Q |
118 |
caaattcagatgagttggattcaaatgcctcgtgaatagcttttttagaactctcttcagttgagaaactcaaattctcatttgaatcataatttagtga |
217 |
Q |
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| T |
20129042 |
caaattcagatgagttggattcaaatgcctcgtgaatagcttttttagaactctcttcagttgagaaactcaaattctcatttgaatcataatttagtga |
20128943 |
T |
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| Q |
218 |
accttcaatgtttgcaacttcttaaatgaccccttcaccaacaacttccatatcgatttgagcagtcatgactttccgttgtttactaaaatttcaacct |
317 |
Q |
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| T |
20128942 |
accttcaatgtttgcaacttcttaaatgaccccttcaccaacaacttccatatcgatttgagcagtcatgactttccgttgtttactaaaatttcaacct |
20128843 |
T |
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| Q |
318 |
atg |
320 |
Q |
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||| |
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| T |
20128842 |
atg |
20128840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 27623737 - 27623806
Alignment:
| Q |
126 |
gatgagttggattcaaatgcctcgtgaatagcttttttagaactctcttcagttgagaaactcaaattct |
195 |
Q |
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| T |
27623737 |
gatgagttggatccaaagacctcctgaatagcctttttagaccgctcttcagtagaaacactcaaattct |
27623806 |
T |
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