View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2288_low_17 (Length: 231)
Name: NF2288_low_17
Description: NF2288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2288_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 5211918 - 5211712
Alignment:
| Q |
10 |
gtgagatgaaaaaatggctacgctaattcggcacggaggg-agtaatagaaaatgaaaaccaagaaagtaataaatgactagaaacataacacaatcctg |
108 |
Q |
| |
|
|||| |||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5211918 |
gtgaaatgaaaaaatggctcggctaattcgggacggaggggagtaatagaaaatgaaaaccaagaaagtaataaatgactaaaaacataacacaatcctg |
5211819 |
T |
|
| Q |
109 |
cagcaaacaaaatgcactcacactatatgtcnnnnnnnttgtcatgtcaagtgttttaagattacaaaatagagcttaaatttatctaataatcgaatga |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5211818 |
cagcaaacaaaatgcactcacactatatgtcaaaaaaattgtcatgtcaagtgttttaagattacaaaatagagcttacatttatctaataatcgaatga |
5211719 |
T |
|
| Q |
209 |
aaaatct |
215 |
Q |
| |
|
||||||| |
|
|
| T |
5211718 |
aaaatct |
5211712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 28572354 - 28572399
Alignment:
| Q |
10 |
gtgagatgaaaaaatggctacgctaattcggcacggagggagtaat |
55 |
Q |
| |
|
|||| |||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
28572354 |
gtgaaatgaaaaaatggctcagctaattcgggacggagggagtaat |
28572399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 7425837 - 7425789
Alignment:
| Q |
10 |
gtgagatgaaaaaatggctacgctaattcggcacggagggagtaataga |
58 |
Q |
| |
|
|||| |||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
7425837 |
gtgaaatgaaaaaatggctcagctaattcgggacggagggagtaataga |
7425789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 42575599 - 42575553
Alignment:
| Q |
10 |
gtgagatgaaaaaatggctacgctaattcggcacggagggagtaata |
56 |
Q |
| |
|
|||| |||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
42575599 |
gtgaaatgaaaaaatggctcagctaattcgggacggagggagtaata |
42575553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University