View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2288_low_18 (Length: 230)
Name: NF2288_low_18
Description: NF2288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2288_low_18 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 1529912 - 1529679
Alignment:
| Q |
8 |
tgagatgaacataagtatcaatattagaagatttcatataaccaaataattagaaggttgcaattttaaaattaatttagggattcttgatgttgtaa-- |
105 |
Q |
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| T |
1529912 |
tgagatgaacataagtatcaatattagaagatttcatataaccaaataattagaaggttgcaattttaaaattaatttagggattcttgatgttgtaaca |
1529813 |
T |
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| Q |
106 |
---------tgaaagaatagactcacctttgaagcaaagagcaaggacgacggagaaacgattgtcgacgcaacacatgttgtctcagacgaagcaaaaa |
196 |
Q |
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| T |
1529812 |
gcaaagtaatgaaagaatagactcacctttgaagcaaagagcaaggacgacggagaaacgattgtcggcgcaacacatgttgtctcagacgaagcaaaaa |
1529713 |
T |
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| Q |
197 |
actgaatgaaatgaagaaacgtgaaagaaaataa |
230 |
Q |
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| T |
1529712 |
actgaatgaaatgaagaaacgtgaaagaaaataa |
1529679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 26841687 - 26841448
Alignment:
| Q |
8 |
tgagatgaacataagtatcaatattagaagatttcatataaccaaataattagaaggttgcaattttaaaattaatttagggattcttgatgttgtaat- |
106 |
Q |
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| T |
26841687 |
tgagatgaacataagtatcaatattagaagatttcatataacccaataattagaaggttgcaattttaaaattaatttagggattcttgatgttgtaaca |
26841588 |
T |
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| Q |
107 |
----------------gaaagaatagactcacctttgaagcaaagagcaaggacgacggagaaacgattgtcgacgcaacacatgttgtctcagacgaag |
190 |
Q |
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| T |
26841587 |
ggcacaacaaagtaacgaaagaatagactcgcctttgaagcaaagagcaaggacgacggagaaacgattgtcggcgcaacacatgttgtctccgacgaag |
26841488 |
T |
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| Q |
191 |
caaaaaactgaatgaaatgaagaaacgtgaaagaaaataa |
230 |
Q |
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| T |
26841487 |
caaaaaactgaatgaaatgaagaaacgtgaaagagaataa |
26841448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 22476806 - 22476949
Alignment:
| Q |
8 |
tgagatgaacataagtatcaatattagaagatttcatataaccaaataattagaaggttgcaattttaaaattaatttagggattcttgatgtt------ |
101 |
Q |
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| T |
22476806 |
tgagatgaacataagtatcaatattagaagatttcatataaccaaataattagaaggctgcaattttaaaattaatttagggatttctcatgttgtaaca |
22476905 |
T |
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| Q |
102 |
-----gtaatgaaagaatagactcacctttgaagcaaagagcaa |
140 |
Q |
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| T |
22476906 |
acaaagtaatgaaagaatagactcacctttgaagcaaagagcaa |
22476949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 22476945 - 22476986
Alignment:
| Q |
189 |
agcaaaaaactgaatgaaatgaagaaacgtgaaagaaaataa |
230 |
Q |
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| T |
22476945 |
agcaaaaaactgaatgaaatgaagaaacgtgaaagagaataa |
22476986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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