View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2288_low_2 (Length: 622)

Name: NF2288_low_2
Description: NF2288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2288_low_2
NF2288_low_2
[»] chr4 (1 HSPs)
chr4 (1-605)||(26572874-26573494)
[»] chr2 (18 HSPs)
chr2 (297-606)||(10350473-10350776)
chr2 (305-494)||(10339536-10339724)
chr2 (2-298)||(10377975-10378287)
chr2 (160-315)||(10350221-10350382)
chr2 (417-569)||(10346100-10346250)
chr2 (183-286)||(10345736-10345839)
chr2 (183-300)||(10339246-10339363)
chr2 (166-300)||(10369915-10370049)
chr2 (297-401)||(10370211-10370312)
chr2 (99-298)||(10342064-10342278)
chr2 (1-119)||(10369716-10369832)
chr2 (527-601)||(10370364-10370438)
chr2 (99-155)||(10363499-10363555)
chr2 (296-369)||(10346004-10346076)
chr2 (537-578)||(10339902-10339943)
chr2 (242-298)||(10363609-10363665)
chr2 (188-222)||(10363579-10363613)
chr2 (99-155)||(10368772-10368828)


Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Original strand, 26572874 - 26573494
Alignment:
Q  1 gtgtatcatatattcagaataatcaacnnnnnnnattcaatcaattccaaacaaaaaagaaaacctcgactaaaaggaaaatgtgttctgcaaattgaca 100  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||    
T  26572874 gtgtatcatatattcagaataatcaactttttttattcaatcaattccaaacaaaaaagaaagcctcgcctaaaaggaaaatgtgctctgcaaattgaca 26572973  T
Q  101 tacaaacactgaagatatgaaataaattttctctaacatttatctgttgataacataat---------------agtttaaccttttatgcatggttgag 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||    
T  26572974 tacaaacactgaagatatgaaataaattttctctaacatttatctgttgataacataatcaccaaaacagtatgagtttaaccttttatgcatggttgag 26573073  T
Q  186 ccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctctgaaatttgtttaagaatgatttctttctcttcttcaagcttttgca 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26573074 ccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctctgaaatttgtttaagaatgatttctttctcttcttcaagcttttgca 26573173  T
Q  286 tacacagttcaaaaggatctttttacgagaccaactaaatataactttgaagtttcaacacccgcaagtaagtgctacatcaaat-gatactacaaccat 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26573174 tacacagttcaaaaggatctttttacgagaccaactaaatataactttgaagtttcaacacccgcaagtaagtgctacatcaaatcgatactacaaccat 26573273  T
Q  385 aggcgaaaggacagttcgtttgcnnnnnnnnntgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaa 484  Q
    ||||||||||||||||| |||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26573274 aggcgaaaggacagttcttttgcaaaaaaaaatgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaa 26573373  T
Q  485 catcctataattcacttataaatatgaaataaagggatagacagttgcttaaaacgaagcattacccatcacagttgcaattcaactcaaagtaatgcaa 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26573374 catcctataattcacttataaatatgaaataaagggatagacagttgcttaaaacgaagcattacccatcacagttgcaattcaactcaaagtaatgcaa 26573473  T
Q  585 tactaatgtttatcacagtat 605  Q
     ||||||| ||||||||||||    
T  26573474 aactaatgcttatcacagtat 26573494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 297 - 606
Target Start/End: Original strand, 10350473 - 10350776
Alignment:
Q  297 aaaggatctttttacgagaccaactaaatataactttgaagtttcaacacccgcaagtaagtgctacatcaaatgatactacaaccataggcgaaaggac 396  Q
    |||||||||||||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10350473 aaaggatctttttatgagaccaactaaatttatctatgaagtttcaacacccgcaagtaagtgctacatcaaatgatactacaaccataggcgaacggac 10350572  T
Q  397 agttcgtttgcnnnnnnnnntgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaacatcctataatt 496  Q
    ||||| |||||         ||||||||||||||||||||||| ||||||||||  |||| |||||||||||||||||| ||||    ||||||||||||    
T  10350573 agttcttttgcaaaaaat--tgaaatgatttacaaaagagaacccagaaaggctgcagcaaatagaaaatgcataagaatcaaa----catcctataatt 10350666  T
Q  497 cacttataaatatgaaataaagggatagacagttgcttaaaacgaagcattacccatcacagttgcaattcaactcaaagtaatgcaatactaatgttta 596  Q
    ||||||||||||||||||||||||||| |||||||||||||||  || || |||||||||||||||||||||||||||||||||| |||||||||| |||    
T  10350667 cacttataaatatgaaataaagggatacacagttgcttaaaacttagtatcacccatcacagttgcaattcaactcaaagtaatggaatactaatgctta 10350766  T
Q  597 tcacagtatt 606  Q
    ||||||||||    
T  10350767 tcacagtatt 10350776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 305 - 494
Target Start/End: Original strand, 10339536 - 10339724
Alignment:
Q  305 tttttacgagaccaactaaatataactttgaagtttcaacacccgcaagtaagtgctacatcaaatgatactacaaccataggcgaaaggacagttcgtt 404  Q
    |||||||||||| | |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||  ||    
T  10339536 tttttacgagactacctaaatttaactttaaagtttcaacacccgcaagtaagtgctacatcaaatgatactacagccataggtgaaaggacagttattt 10339635  T
Q  405 tgcnnnnnnnnntgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaacatcctataa 494  Q
    |||         ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  10339636 tgc-aaaaaaattgaaatgatttacaaaagagaacccagaaaggctaaagcaaatagaaaatgcataagaaacaaacaaaaatcctataa 10339724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 2 - 298
Target Start/End: Original strand, 10377975 - 10378287
Alignment:
Q  2 tgtatcatatattcagaataatcaacnnnnnnnattcaatcaattccaaacaaaaaagaaaacctcgactaaaaggaaaatgtgttctgcaaattgacat 101  Q
    ||||| ||||||| ||||||||||||       ||| |||||||||||||||||||  |||||| |  ||||||||||||||||  ||||||||| ||||    
T  10377975 tgtataatatattaagaataatcaactttttttatttaatcaattccaaacaaaaagaaaaacc-cacctaaaaggaaaatgtgcactgcaaattcacat 10378073  T
Q  102 acaaacactgaagatatgaaataaattttctctaacatttatctgttgataacataat---------------agtttaaccttttatgc--atggttga 184  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||               ||||| |||||||||||  ||||| ||    
T  10378074 acaaacactgaagatatgaaataaattttctctaacattcatctgttgctaacaaaatcaccaaaaaagtatgagtttgaccttttatgcatatggtaga 10378173  T
Q  185 gccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctctgaaatttgtttaagaatgatttctttctcttcttcaagcttttgc 284  Q
    |  |||||| ||||||||||||| |||||||||||||| ||||| ||||||||||  ||||||||| |||||| |||||| |||| ||||||||||||||    
T  10378174 gtactaaaggtcttagttctgcattccttcatcaatttcttcttccacattctctagaatttgtttcagaatgttttcttcctctgcttcaagcttttgc 10378273  T
Q  285 atacacagttcaaa 298  Q
    |||||| |||||||    
T  10378274 atacactgttcaaa 10378287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 160 - 315
Target Start/End: Original strand, 10350221 - 10350382
Alignment:
Q  160 agtttaaccttttatgcatggttgagccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctctgaaatttgtttaagaatgat 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||||||| |    
T  10350221 agtttaaccttttatgcatggttgagccctaaagttcttagttctgcattccttcatcaattttttctgtcacattctctgaaattttcttaagaatgtt 10350320  T
Q  260 ttct--ttc----tcttcttcaagcttttgcatacacagttcaaaaggatctttttacgaga 315  Q
    ||||  |||    ||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  10350321 ttcttcttcttcttcttcttcaagtttttgcatacacagttcgaaaggatctttttacgaga 10350382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 417 - 569
Target Start/End: Original strand, 10346100 - 10346250
Alignment:
Q  417 tgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaacatcctataattcacttataaatatgaaataa 516  Q
    |||||| ||||||||||||||||  ||||| | | ||||| ||||||||||||| ||||||||||| |  ||||||||||||| ||| |||||| |||||    
T  10346100 tgaaattatttacaaaagagaaccaagaaaagatgaagcaaatagaaaatgcatcagaaacaaacaga--tcctataattcacgtattaatatggaataa 10346197  T
Q  517 agggatagacagttgcttaaaacgaagcattacccatcacagttgcaattcaa 569  Q
    ||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  10346198 agggagacgcagttgcttaaaacgaagcattacccatcacagttgcaattcaa 10346250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 10345736 - 10345839
Alignment:
Q  183 gagccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctctgaaatttgtttaagaatgatttctttctcttcttcaagctttt 282  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| |||||| |||||||||||||||||    
T  10345736 gagccctgaagttcttagttctgcattccttcatcaattttttctttcacattctctgaaattttcttaagaatgttttcttcctcttcttcaagctttt 10345835  T
Q  283 gcat 286  Q
    ||||    
T  10345836 gcat 10345839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 183 - 300
Target Start/End: Original strand, 10339246 - 10339363
Alignment:
Q  183 gagccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctctgaaatttgtttaagaatgatttctttctcttcttcaagctttt 282  Q
    |||| ||||||||||| |||||||| |||||||||||||| ||||| ||||||||||  ||||||||| |||||| |||||| |||||||||||||||||    
T  10339246 gagcactaaagttcttggttctgcattccttcatcaatttcttcttccacattctctagaatttgtttcagaatgttttcttcctcttcttcaagctttt 10339345  T
Q  283 gcatacacagttcaaaag 300  Q
    |||||||| |||||||||    
T  10339346 gcatacactgttcaaaag 10339363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 10369915 - 10370049
Alignment:
Q  166 accttttatgcatggttgagccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctctgaaatttgtttaagaatgatttcttt 265  Q
    |||||||||||||||| |||| || ||||||||||||||||| |||||||||||||| ||||| ||||||||||  ||||| ||| |||| | | ||||     
T  10369915 accttttatgcatggtggagcacttaagttcttagttctgcattccttcatcaatttcttcttccacattctctagaatttctttcagaacgttctcttc 10370014  T
Q  266 ctcttcttcaagcttttgcatacacagttcaaaag 300  Q
    ||||||||||| ||||||||||||| |||||||||    
T  10370015 ctcttcttcaaacttttgcatacactgttcaaaag 10370049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 297 - 401
Target Start/End: Original strand, 10370211 - 10370312
Alignment:
Q  297 aaaggatctttttacgagaccaactaaatataactttgaagtttcaacacccgcaagtaagtgctacatcaaatgatactacaaccataggcgaaaggac 396  Q
    |||||||||||||| |||||||||||||| ||||||| || ||||||||||   |||||||||||||||||||| |||||||||||||||||||||||||    
T  10370211 aaaggatctttttatgagaccaactaaatttaactttaaattttcaacacc--taagtaagtgctacatcaaat-atactacaaccataggcgaaaggac 10370307  T
Q  397 agttc 401  Q
    |||||    
T  10370308 agttc 10370312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 99 - 298
Target Start/End: Original strand, 10342064 - 10342278
Alignment:
Q  99 catacaaacactgaagatatgaaataaattttctctaacatttatctgttgataacataat---------------agtttaaccttttatgcatggttg 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||               ||||||||| ||||||||||||      
T  10342064 catacaaacactgaagatatgaaataaattttctctaacatttatctgttgttaacaaaatcaccaaaaaagtatgagtttaaccatttatgcatggtaa 10342163  T
Q  184 agccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctctgaaatttgtttaagaatgatttctttctcttcttcaagcttttg 283  Q
    ||  ||||| | ||||||||| |  |||||||||||||| ||||| |||||||||   ||||||||| |||| | ||||||  ||| ||||||||||| |    
T  10342164 agtactaaaatacttagttctactttccttcatcaatttcttcttccacattctcaagaatttgtttcagaacgttttcttcatctgcttcaagctttcg 10342263  T
Q  284 catacacagttcaaa 298  Q
    ||||||| |||||||    
T  10342264 catacactgttcaaa 10342278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 10369716 - 10369832
Alignment:
Q  1 gtgtatcatatattcagaataatcaacnnnnnnnattcaatcaattccaaacaaaaaagaaaacctcgactaaaaggaaaatgtgttctgcaaattgaca 100  Q
    |||||| |||||||||||||||||||        ||||||||||||  |||||||||| |||   || | ||||||||||||||| |||||||||| |||    
T  10369716 gtgtatgatatattcagaataatcaaaattttctattcaatcaattataaacaaaaaaaaaat--tcaattaaaaggaaaatgtgctctgcaaattcaca 10369813  T
Q  101 tacaaacactgaagatatg 119  Q
    |||||||||||||||||||    
T  10369814 tacaaacactgaagatatg 10369832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 527 - 601
Target Start/End: Original strand, 10370364 - 10370438
Alignment:
Q  527 agttgcttaaaacgaagcattacccatcacagttgcaattcaactcaaagtaatgcaatactaatgtttatcaca 601  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||  | ||||| ||||||||    
T  10370364 agttgcttaaaacaaagcattacccatcacagttgcaattcaactcaaactaatacagcattaatgcttatcaca 10370438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 10363499 - 10363555
Alignment:
Q  99 catacaaacactgaagatatgaaataaattttctctaacatttatctgttgataaca 155  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||    
T  10363499 catacaaacaccgaagatatgaaataaattttctctaacatttatctcttgttaaca 10363555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 296 - 369
Target Start/End: Original strand, 10346004 - 10346076
Alignment:
Q  296 aaaaggatctttttacgagaccaactaaatataactttgaagtttcaacacccgcaagtaagtgctacatcaaa 369  Q
    ||||||||||||||| || |||| |||||| ||||||| | |||||||||| |||||| |||||||||||||||    
T  10346004 aaaaggatctttttatgatacca-ctaaatttaactttaaggtttcaacactcgcaagaaagtgctacatcaaa 10346076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 578
Target Start/End: Original strand, 10339902 - 10339943
Alignment:
Q  537 aacgaagcattacccatcacagttgcaattcaactcaaagta 578  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  10339902 aacgaagcattactcatcatagttgcaattcaactcaaagta 10339943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 10363609 - 10363665
Alignment:
Q  242 aatttgtttaagaatgatttctttctcttcttcaagcttttgcatacacagttcaaa 298  Q
    ||||||||| |||||| ||||||  ||| |||||||||||||||||||| |||||||    
T  10363609 aatttgtttcagaatgttttcttcatctgcttcaagcttttgcatacactgttcaaa 10363665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 10363579 - 10363613
Alignment:
Q  188 ctaaagttcttagttctgcaatccttcatcaattt 222  Q
    |||||||||||||||||||| ||||||||||||||    
T  10363579 ctaaagttcttagttctgcattccttcatcaattt 10363613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 10368772 - 10368828
Alignment:
Q  99 catacaaacactgaagatatgaaataaattttctctaacatttatctgttgataaca 155  Q
    ||||||| || ||||||| ||||| |||||||||| ||||||||||| ||| |||||    
T  10368772 catacaatcagtgaagatgtgaaacaaattttctccaacatttatcttttgttaaca 10368828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University