View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2288_low_4 (Length: 420)
Name: NF2288_low_4
Description: NF2288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2288_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 11325790 - 11326084
Alignment:
| Q |
1 |
ttccgattgagggttatttgaagaaactatcgtctcgaagccttctttcatcacctgcataatatttcttccaatctccactgaagacgagttaaaagaa |
100 |
Q |
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| T |
11325790 |
ttccgattgagggttatttgaagaaactatcgtcttgaagccttctttcatcacctgcataatattgcttccaatctccactgaagatgagttaaaagaa |
11325889 |
T |
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| Q |
101 |
tcctagtgtcatcattaagggaccaaagaagagattcttaaacctaggaagaaaatggtcgatagaccaaagaataatcttatcgttcgttcttgcatat |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11325890 |
tcctagtgtcatcattaaggaaccaaagaagagattcttaaacctaggaagaaaatggtcgatagaccaaagaataatcttatcgttcgttcctgcatat |
11325989 |
T |
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| Q |
201 |
attccagttcaataacattacaatgtaaatcaaccaaagccaaaatctactacctcgtaatttggcaccgtc-aaattattaagacaataaccat |
294 |
Q |
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| T |
11325990 |
attccagttcaataacattacaatgtaaatcaaccaaagccaaaatctactacctcgtaatttggcaccgtcaaaattattaagacaataaccat |
11326084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 11483811 - 11484105
Alignment:
| Q |
1 |
ttccgattgagggttatttgaagaaactatcgtctcgaagccttctttcatcacctgcataatatttcttccaatctccactgaagacgagttaaaagaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
11483811 |
ttccgattgagggttatttgaagaaactatcgtcttgaagccttctttcatcacctgcataatattgcttccaatctccactgaagatgagttaaaagaa |
11483910 |
T |
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| Q |
101 |
tcctagtgtcatcattaagggaccaaagaagagattcttaaacctaggaagaaaatggtcgatagaccaaagaataatcttatcgttcgttcttgcatat |
200 |
Q |
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| T |
11483911 |
tcctagtgtcatcattaaggaaccaaagaagagattcttaaacctaggaagaaaatggtcgatagaccaaagaataatcttatcgttcgttcctgcatat |
11484010 |
T |
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| Q |
201 |
attccagttcaataacattacaatgtaaatcaaccaaagccaaaatctactacctcgtaatttggcaccgtc-aaattattaagacaataaccat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11484011 |
attccagttcaataacattacaatgtaaatcaaccaaagccaaaatctactacctcgtaatttggcaccgtcaaaattattaagacaataaccat |
11484105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 349 - 420
Target Start/End: Original strand, 11326082 - 11326153
Alignment:
| Q |
349 |
cataaccagagagagccccacatcagtttatccttgcatttgcttgtaaataaaaatcattctatccattgt |
420 |
Q |
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| T |
11326082 |
cataaccagagagagccccacatcagtttatccatgcatttgcttgtaaataaaaatcattctatccattgt |
11326153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 349 - 420
Target Start/End: Original strand, 11484103 - 11484174
Alignment:
| Q |
349 |
cataaccagagagagccccacatcagtttatccttgcatttgcttgtaaataaaaatcattctatccattgt |
420 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11484103 |
cataaccagagagagccccacatcagtttatccatgcatttgcttgtaaataaaaatcattctatccattgt |
11484174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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