View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2288_low_8 (Length: 353)
Name: NF2288_low_8
Description: NF2288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2288_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 4108479 - 4108779
Alignment:
| Q |
19 |
ggacattcttctacaataaaagccaaaagaaatcagcgttcatccttagcttgtaaaatatttaaagcaaaaagatatctttttaatcgacattaatcaa |
118 |
Q |
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| T |
4108479 |
ggacattcttctacaataaaagtcaaaagaaatcagcgttgatccttagcttgtaaaatacttaaagcaaacagatatctttttaatcgacattaatcaa |
4108578 |
T |
|
| Q |
119 |
atcatagatgttgcctacaataccatcaaatatttatatttggtgcaaaatttgtctaccaacacagggtcggccacaactctcttaacccgataagact |
218 |
Q |
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| T |
4108579 |
atcatagatgttgcctataataccatcaaatatttatatttggtgcgaaacatgtctaccaacacagggtcgaccacaactctcttaacccgataagact |
4108678 |
T |
|
| Q |
219 |
tctcgtacatagttgaagaactcaagtttgtctcgattttgaacaggtaagatttttcaaccatatcaaggatatctttggaaagacatcctaaaactat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4108679 |
tctcgtacatagttgaagaactcaagtttgtctcgactttgaacaggtaagatttctcaaccatatcaaggatatctttggaaagacattctaaaactat |
4108778 |
T |
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| Q |
319 |
a |
319 |
Q |
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| |
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| T |
4108779 |
a |
4108779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 8994877 - 8994657
Alignment:
| Q |
19 |
ggacattcttctacaataaaagccaaaagaaatcagcgttcatcct-tagcttgtaaaatatttaaagcaaaaagat--atctttttaatcgacattaat |
115 |
Q |
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| T |
8994877 |
ggacattcttctacaataaaagtcagtagaaatcagcgttaatcctattacttgaattatacgtaaatcaaaaa-atggattttttaaatcaacattaaa |
8994779 |
T |
|
| Q |
116 |
caaatcatagatgttgcctacaataccatcaaatatttatatttggtgcaaaatttgtctaccaacacagggtcggccacaactctcttaacccgataag |
215 |
Q |
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|||| ||||||| ||||| ||||||||||||| |||||||||||| ||| || ||||||||||||||||| ||| ||| |||||||||||||| | |
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| T |
8994778 |
-aaattatagatgcagcctataataccatcaaatctttatatttggtctgaaacttttctaccaacacagggtcagccgtaacactcttaacccgatatg |
8994680 |
T |
|
| Q |
216 |
acttctcgtacatagttgaagaa |
238 |
Q |
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|||||||||||||||| |||||| |
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| T |
8994679 |
acttctcgtacatagtcgaagaa |
8994657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 122 - 297
Target Start/End: Original strand, 49712333 - 49712508
Alignment:
| Q |
122 |
atagatgttgcctacaataccatcaaatatttatatttggtgcaaaatttgtctaccaacacagggtcggccacaactctcttaacccgataagacttct |
221 |
Q |
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| T |
49712333 |
atagatgcagcctataataccatcaaatctttatatttggtctgaaacttttctaccaacacaggatcggccgtaactctcttaacccaataggacttct |
49712432 |
T |
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| Q |
222 |
cgtacatagttgaagaactcaagtttgtctcgattttgaacaggtaagatttttcaaccatatcaaggatatcttt |
297 |
Q |
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| T |
49712433 |
cgtacatagtcgaagaacccaagtttgtctcgactttgaacaggtaagatttctcaaccatagcaaggatatcttt |
49712508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 122 - 297
Target Start/End: Original strand, 21413602 - 21413777
Alignment:
| Q |
122 |
atagatgttgcctacaataccatcaaatatttatatttggtgcaaaatttgtctaccaacacagggtcggccacaactctcttaacccgataagacttct |
221 |
Q |
| |
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||||||| ||||| ||||||||||||| |||||||||||| ||| || |||||||||||||| |||||| |||||||||||||||||| ||||||| |
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| T |
21413602 |
atagatgcagcctataataccatcaaatctttatatttggtctgaaacttttctaccaacacaggatcggccgtaactctcttaacccgataggacttct |
21413701 |
T |
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| Q |
222 |
cgtacatagttgaagaactcaagtttgtctcgattttgaacaggtaagatttttcaaccatatcaaggatatcttt |
297 |
Q |
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|||||||||| ||||| | |||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
21413702 |
cgtacatagtcgaagatcccaagtttgtctcgactttgaacaggtaagatttctcaaccatagcaaggatatcttt |
21413777 |
T |
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