View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2289_low_1 (Length: 506)

Name: NF2289_low_1
Description: NF2289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2289_low_1
NF2289_low_1
[»] chr8 (17 HSPs)
chr8 (13-321)||(27049128-27049448)
chr8 (363-442)||(27049450-27049529)
chr8 (263-341)||(10120780-10120858)
chr8 (216-334)||(10114465-10114584)
chr8 (249-338)||(9956785-9956875)
chr8 (238-309)||(27028829-27028901)
chr8 (273-341)||(32840954-32841022)
chr8 (240-310)||(1930035-1930106)
chr8 (211-341)||(7514549-7514680)
chr8 (211-337)||(11376674-11376800)
chr8 (211-341)||(26771236-26771367)
chr8 (211-305)||(33714240-33714334)
chr8 (272-339)||(33808336-33808403)
chr8 (262-304)||(4281569-4281611)
chr8 (272-313)||(27492970-27493011)
chr8 (225-293)||(28769355-28769424)
chr8 (216-303)||(24558829-24558917)
[»] chr3 (18 HSPs)
chr3 (211-341)||(21367638-21367769)
chr3 (274-342)||(26878235-26878303)
chr3 (211-342)||(34610773-34610905)
chr3 (240-310)||(35394497-35394568)
chr3 (215-341)||(45264334-45264461)
chr3 (209-341)||(402510-402643)
chr3 (211-310)||(20170707-20170807)
chr3 (236-306)||(2719464-2719535)
chr3 (211-304)||(36783339-36783433)
chr3 (214-264)||(37689430-37689480)
chr3 (222-331)||(45541553-45541662)
chr3 (211-296)||(37788831-37788916)
chr3 (236-295)||(50600192-50600252)
chr3 (216-337)||(20880452-20880574)
chr3 (237-290)||(34254827-34254881)
chr3 (241-293)||(37273135-37273188)
chr3 (211-307)||(25447247-25447343)
chr3 (236-311)||(32582740-32582816)
[»] chr5 (29 HSPs)
chr5 (236-315)||(7984965-7985045)
chr5 (211-337)||(39105435-39105562)
chr5 (211-293)||(12425542-12425625)
chr5 (211-315)||(9202742-9202847)
chr5 (210-303)||(6587113-6587207)
chr5 (227-339)||(28776980-28777093)
chr5 (249-304)||(4014429-4014485)
chr5 (250-341)||(42100321-42100413)
chr5 (274-341)||(7808540-7808607)
chr5 (211-337)||(17258856-17258982)
chr5 (227-341)||(36639509-36639623)
chr5 (212-294)||(1619062-1619144)
chr5 (213-290)||(7319379-7319457)
chr5 (253-338)||(29925854-29925940)
chr5 (222-315)||(34160713-34160807)
chr5 (240-306)||(7319011-7319078)
chr5 (211-293)||(7674619-7674702)
chr5 (249-339)||(37611186-37611276)
chr5 (249-339)||(37787916-37788006)
chr5 (249-334)||(17368685-17368770)
chr5 (262-339)||(10639976-10640053)
chr5 (236-304)||(25461321-25461390)
chr5 (216-283)||(2563186-2563254)
chr5 (267-315)||(6096575-6096623)
chr5 (222-293)||(10272447-10272519)
chr5 (227-290)||(18637039-18637103)
chr5 (222-262)||(32408640-32408680)
chr5 (211-310)||(35446026-35446126)
chr5 (215-310)||(40119867-40119963)
[»] chr6 (12 HSPs)
chr6 (211-341)||(2735040-2735171)
chr6 (211-337)||(9093528-9093655)
chr6 (236-331)||(31624086-31624181)
chr6 (212-338)||(13907557-13907684)
chr6 (263-341)||(9912159-9912237)
chr6 (253-337)||(31813174-31813259)
chr6 (211-304)||(769110-769203)
chr6 (249-315)||(34430455-34430522)
chr6 (210-295)||(8364990-8365076)
chr6 (249-293)||(835265-835310)
chr6 (242-341)||(2454991-2455090)
chr6 (236-308)||(9109252-9109325)
[»] chr2 (31 HSPs)
chr2 (211-337)||(1625871-1625998)
chr2 (211-329)||(18066099-18066218)
chr2 (215-341)||(26626848-26626975)
chr2 (249-339)||(40682365-40682455)
chr2 (215-282)||(8017409-8017477)
chr2 (223-387)||(2142636-2142802)
chr2 (250-331)||(750680-750762)
chr2 (222-294)||(680485-680558)
chr2 (211-291)||(12464491-12464572)
chr2 (211-341)||(26143608-26143740)
chr2 (249-308)||(40279416-40279476)
chr2 (240-338)||(16451118-16451217)
chr2 (211-304)||(18962042-18962137)
chr2 (211-305)||(28039336-28039431)
chr2 (249-307)||(40279276-40279335)
chr2 (249-307)||(40279346-40279405)
chr2 (263-309)||(7928299-7928345)
chr2 (211-304)||(12313178-12313272)
chr2 (249-310)||(16398123-16398185)
chr2 (251-293)||(43868289-43868331)
chr2 (249-338)||(45229520-45229610)
chr2 (249-301)||(10646297-10646350)
chr2 (249-293)||(15977994-15978039)
chr2 (239-291)||(33319830-33319883)
chr2 (249-305)||(35379020-35379077)
chr2 (217-309)||(36043881-36043974)
chr2 (211-307)||(40279168-40279265)
chr2 (211-310)||(3611197-3611297)
chr2 (239-310)||(9174814-9174886)
chr2 (266-310)||(21788341-21788385)
chr2 (265-305)||(43511111-43511151)
[»] chr7 (17 HSPs)
chr7 (211-341)||(20526417-20526548)
chr7 (211-332)||(39967891-39968013)
chr7 (240-310)||(36517579-36517650)
chr7 (222-284)||(39393603-39393665)
chr7 (214-386)||(33678754-33678927)
chr7 (211-302)||(40688993-40689085)
chr7 (211-341)||(39907774-39907903)
chr7 (211-293)||(44821930-44822013)
chr7 (228-341)||(20526897-20527011)
chr7 (239-293)||(25596032-25596087)
chr7 (249-331)||(34035926-34036009)
chr7 (215-341)||(17248530-17248654)
chr7 (249-341)||(44989645-44989739)
chr7 (215-284)||(47177611-47177681)
chr7 (211-283)||(12110331-12110404)
chr7 (211-295)||(22283758-22283843)
chr7 (227-291)||(43648227-43648292)
[»] chr4 (17 HSPs)
chr4 (211-338)||(1706593-1706721)
chr4 (211-341)||(22661980-22662112)
chr4 (211-341)||(22666459-22666591)
chr4 (211-293)||(28300315-28300398)
chr4 (211-293)||(51630082-51630165)
chr4 (238-315)||(55414414-55414492)
chr4 (211-307)||(3155574-3155671)
chr4 (249-332)||(17822842-17822926)
chr4 (238-337)||(24169261-24169361)
chr4 (214-309)||(40174537-40174633)
chr4 (272-339)||(48719362-48719428)
chr4 (249-294)||(825505-825551)
chr4 (227-304)||(35571636-35571714)
chr4 (236-293)||(43932431-43932489)
chr4 (210-258)||(24091433-24091481)
chr4 (279-331)||(49939929-49939981)
chr4 (209-292)||(54392836-54392920)
[»] chr1 (25 HSPs)
chr1 (210-341)||(4576775-4576906)
chr1 (225-308)||(45975675-45975759)
chr1 (211-337)||(10199381-10199507)
chr1 (225-338)||(7136970-7137083)
chr1 (211-302)||(9656621-9656713)
chr1 (273-341)||(11941296-11941364)
chr1 (211-310)||(24915050-24915150)
chr1 (249-308)||(51695496-51695556)
chr1 (211-309)||(27820337-27820436)
chr1 (211-340)||(3887601-3887731)
chr1 (249-341)||(7941615-7941708)
chr1 (211-342)||(39976177-39976312)
chr1 (211-302)||(34290207-34290299)
chr1 (226-300)||(35179125-35179200)
chr1 (263-310)||(38503464-38503511)
chr1 (272-339)||(47498809-47498876)
chr1 (239-304)||(10744300-10744366)
chr1 (211-304)||(31517745-31517839)
chr1 (222-276)||(31918235-31918289)
chr1 (211-284)||(49888738-49888812)
chr1 (211-295)||(7218088-7218173)
chr1 (236-304)||(14629971-14630040)
chr1 (239-295)||(32113657-32113714)
chr1 (249-306)||(38882915-38882972)
chr1 (211-263)||(48830123-48830175)
[»] scaffold0018 (1 HSPs)
scaffold0018 (211-292)||(178342-178424)
[»] scaffold0098 (1 HSPs)
scaffold0098 (247-284)||(50852-50889)
[»] scaffold0024 (1 HSPs)
scaffold0024 (240-283)||(21311-21355)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-144; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 27049128 - 27049448
Alignment:
Q  13 gagatgaaaaggtcagagttgaacacttctaatctatacatataagagtattttaggaacatccatacaaaatctatatgcaaattgaacacattacata 112  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27049128 gagatgaaaaagtcagagttgaacacgtctaatctatacatataagagtattttaggaacatccatacaaaatctatatgcaaattgaacacattacata 27049227  T
Q  113 cactatcaactttttagtacaaaaaagatttagactctgtttggataaacatctaacttaaagcttatagtacaagcacttgcgtataatttattt---- 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||        
T  27049228 cactatcaactttttagtacaaaaaagatttagactctgtttggataaacatctaatttaaagcttatagtacaagcacttacgtataatttatttctat 27049327  T
Q  209 --------ataaataaagttcaattattttcgtacaagctataaacttttttcataagctatttggagaaattatgaaaataagatgaaaacagcatatg 300  Q
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27049328 agcaaaagataaataaagttcaattattttcgtataagctataaacttttttcataagctatttggagaaattatgaaaataagatgaaaacagcatatg 27049427  T
Q  301 aacaatgtcacaagccaattt 321  Q
    |||||||||||||||||||||    
T  27049428 aacaatgtcacaagccaattt 27049448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 363 - 442
Target Start/End: Original strand, 27049450 - 27049529
Alignment:
Q  363 gataaatttaaataagtcaatccaatcacgccttcctaaattgaaaaattaatcacatgtcgtgtccgacatccacacat 442  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  27049450 gataagtttaaataagtcaatccaatcacgccttcctagattgaaaaattaatcacatgtcatgtccgacatccacacat 27049529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 341
Target Start/End: Original strand, 10120780 - 10120858
Alignment:
Q  263 ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaacagt 341  Q
    |||||||| ||||||||||||| ||||||||||||||||  ||||||| ||||   |||||||||||||||||||||||    
T  10120780 ttggagaacttatgaaaataagctgaaaacagcatatgataaatgtcataagctgttttcataagttctctcaaacagt 10120858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 334
Target Start/End: Original strand, 10114465 - 10114584
Alignment:
Q  216 aagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaag 314  Q
    ||||| |||| |||| ||| ||||||||| || ||||||| |||||| ||||||||  |||||||||||| ||||||||||||||||  ||||| | |||    
T  10114465 aagttgaattgttttggtataagctataagctgttttcattagctatattggagaacatatgaaaataagctgaaaacagcatatgataaatgttataag 10114564  T
Q  315 ccaatttcataagttctctc 334  Q
        ||||||||||||||||    
T  10114565 ttgttttcataagttctctc 10114584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 249 - 338
Target Start/End: Complemental strand, 9956875 - 9956785
Alignment:
Q  249 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaac 338  Q
    ||||||||| |||| |||||||| ||||||||||||| |||||||  | ||||||||||| || || | | ||||||||||||||||||||    
T  9956875 ttttcataatctatcttggagaacttatgaaaataagctgaaaactacttatgaacaatgccataaactattttcataagttctctcaaac 9956785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 309
Target Start/End: Original strand, 27028829 - 27028901
Alignment:
Q  238 gctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    ||||||| || |||||||||||||| |||||||  ||||||||||||| |||||| ||| |||||| ||||||    
T  27028829 gctataagctgttttcataagctatcttggagagcttatgaaaataagctgaaaatagcttatgaaaaatgtc 27028901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 32841022 - 32840954
Alignment:
Q  273 tatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaacagt 341  Q
    |||||||||||| |||||||| | |||||||||||||| |||    |||||||||||||| ||||||||    
T  32841022 tatgaaaataagctgaaaacaacttatgaacaatgtcataagttgttttcataagttctcccaaacagt 32840954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 1930035 - 1930106
Alignment:
Q  240 tataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtca 310  Q
    ||||| || |||||||||||||| |||| ||  || |||||||||| |||||||||| ||||||||||||||    
T  1930035 tataagctgttttcataagctatcttggtgaccttgtgaaaataagctgaaaacagcttatgaacaatgtca 1930106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 341
Target Start/End: Original strand, 7514549 - 7514680
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagcta-tttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||||| |||||||| ||||| || |||||| || || ||||||||||||| |||| |||| |  ||||||| || || ||||||| ||||||||||||     
T  7514549 aaataatgttcaattgttttcatataagctacaagctgttttcataagctattttgcagaactagtgaaaattagttggaaacagcttatgaacaatgtt 7514648  T
Q  310 acaagccaatttcataagttctctcaaacagt 341  Q
    |  |||   ||||| |||||||| ||||||||    
T  7514649 atcagctgctttcacaagttctcccaaacagt 7514680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 337
Target Start/End: Original strand, 11376674 - 11376800
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatttg-gagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||||||||  |||||||||  || |||||||||  |  |||| ||||||||||  |||||  |||||||||||| ||||||||  |||| |||| ||||    
T  11376674 aaataaagtctaattattttgatataagctataagatgctttcttaagctattttagagaatctatgaaaataagctgaaaacaagatattaaca-tgtc 11376772  T
Q  310 acaagccaatttcataagttctctcaaa 337  Q
    |||||| | |||||||||||||| ||||    
T  11376773 acaagctattttcataagttctcccaaa 11376800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 341
Target Start/End: Original strand, 26771236 - 26771367
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    ||||||| || |||| |||| ||| | ||||||| ||||||| ||||| ||| || ||||| ||||||||||||| ||||||  || | |||| | ||||    
T  26771236 aaataaacttaaattgtttttgtatatgctataagctttttttataagatatattagagaacttatgaaaataagttgaaaaaggcttttgaaaattgtc 26771335  T
Q  310 acaagccaatttcataagttctctcaaacagt 341  Q
    | ||||   |||||||||||||| ||||||||    
T  26771336 ataagctgttttcataagttctcccaaacagt 26771367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 33714334 - 33714240
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaa 305  Q
    |||||||||  || |||||| |||||| |||||| || |||||||||||||| | |||||  |||| |||||||| |||||||||| |||||||||    
T  33714334 aaataaagtcaaactatttt-gtacaatctataagctattttcataagctatctgggagagcttataaaaataagctgaaaacagcttatgaacaa 33714240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 339
Target Start/End: Original strand, 33808336 - 33808403
Alignment:
Q  272 ttatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaaca 339  Q
    ||||||||||||| | |||||| | |||||||||| ||| |||| | |||||||||||||| ||||||    
T  33808336 ttatgaaaataagctaaaaacaacttatgaacaatatcataagctattttcataagttctcccaaaca 33808403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 4281569 - 4281611
Alignment:
Q  262 tttggagaaattatgaaaataagatgaaaacagcatatgaaca 304  Q
    ||||||||| |||||||||||||||||||||| | ||||||||    
T  4281569 tttggagaatttatgaaaataagatgaaaacaacttatgaaca 4281611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 313
Target Start/End: Original strand, 27492970 - 27493011
Alignment:
Q  272 ttatgaaaataagatgaaaacagcatatgaacaatgtcacaa 313  Q
    ||||||||||||| |||||| ||| |||||||||||||||||    
T  27492970 ttatgaaaataagttgaaaatagcttatgaacaatgtcacaa 27493011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 28769424 - 28769355
Alignment:
Q  225 tattttcgtacaagctataaacttttttcataagcta-tttggagaaattatgaaaataagatgaaaaca 293  Q
    ||||||| || ||||||||| || ||||||||||||| ||||||||  ||||| ||||||| ||||||||    
T  28769424 tattttcttataagctataagctgttttcataagctattttggagagtttatggaaataagctgaaaaca 28769355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 303
Target Start/End: Original strand, 24558829 - 24558917
Alignment:
Q  216 aagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaac 303  Q
    ||||| ||||||||||||| |||||||||  | |||||||||||||| |||||||  | ||| ||||||| |||| | ||| |||||||    
T  24558829 aagttaaattattttcgtataagctataagttgttttcataagctatcttggagacttaatgtaaataagttgaacatagcttatgaac 24558917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 211 - 341
Target Start/End: Original strand, 21367638 - 21367769
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||||||||| |||| |||||||| ||  |||||  | |||||||||||||| |||||||| ||||||||||||| |||||||||| | |||||||||||    
T  21367638 aaataaagttaaattgttttcgtataatgtataagttgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttgtgaacaatgtc 21367737  T
Q  310 acaagccaatttcataagttctctcaaacagt 341  Q
    | ||||   |||||||||||||| ||||||||    
T  21367738 ataagctgttttcataagttctcccaaacagt 21367769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 26878235 - 26878303
Alignment:
Q  274 atgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaacagtt 342  Q
    ||||||||||| |||||||||  |||||||||||||| |||| | ||||| ||||||||||||||||||    
T  26878235 atgaaaataagctgaaaacagtttatgaacaatgtcataagctattttcacaagttctctcaaacagtt 26878303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 211 - 342
Target Start/End: Complemental strand, 34610905 - 34610773
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||| ||||| ||||||||| ||||||| |||||  |  ||||||||||||| |||| ||| |||||||||| || |||||||  | |||||||||||||    
T  34610905 aaatgaagttaaattatttttgtacaagttataagttgctttcataagctatcttggcgaacttatgaaaatcagctgaaaaccacttatgaacaatgtc 34610806  T
Q  310 acaagccaatttcataagttctctcaaacagtt 342  Q
    | ||||   |||||||||||||| |||| ||||    
T  34610805 ataagcagttttcataagttctcccaaatagtt 34610773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 35394568 - 35394497
Alignment:
Q  240 tataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtca 310  Q
    |||| ||| |||||||||||||| ||| |||| ||||||||||||| |||||||||| ||||||||||||||    
T  35394568 tatacactgttttcataagctatcttgaagaatttatgaaaataagttgaaaacagcttatgaacaatgtca 35394497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 341
Target Start/End: Complemental strand, 45264461 - 45264334
Alignment:
Q  215 aaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaa 313  Q
    |||||| |||| ||||| |||||||||||| || |||||||||||| | ||||| || |  |||||||||| |||||||||| ||||||||||| |  ||    
T  45264461 aaagttaaattgttttcttacaagctataagctattttcataagctctcttggaaaattggtgaaaataaggtgaaaacagcttatgaacaatgccgtaa 45264362  T
Q  314 gccaatttcataagttctctcaaacagt 341  Q
    |    |||||||||||||||||| ||||    
T  45264361 gttgttttcataagttctctcaaccagt 45264334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 341
Target Start/End: Complemental strand, 402643 - 402510
Alignment:
Q  209 ataaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatg 307  Q
    |||| |||| || |||| |||||||| ||| ||||| || |||| |||| |||| ||| |||| || ||||| |||| |||||||||| |||||||||||    
T  402643 ataattaaatttaaattgttttcgtataagttataagctgtttttataatctatcttgaagaacttgtgaaattaagctgaaaacagcttatgaacaatg 402544  T
Q  308 tcacaagccaatttcataagttctctcaaacagt 341  Q
    ||| ||||   ||||||| |||||| ||||||||    
T  402543 tcataagctgttttcatacgttctcccaaacagt 402510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 310
Target Start/End: Complemental strand, 20170807 - 20170707
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    ||||||||||||||| |||||||| |||||||||||| ||||| |||||||| ||| |||  ||||| ||||||| | |||||| | | | |||||||||    
T  20170807 aaataaagttcaattgttttcgtaaaagctataaactgttttcctaagctatcttgtagagcttatgcaaataagctaaaaacaacttttaaacaatgtc 20170708  T
Q  310 a 310  Q
    |    
T  20170707 a 20170707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 2719464 - 2719535
Alignment:
Q  236 aagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaat 306  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||||| ||| |||| | |||| |||||    
T  2719464 aagctataaactgttttcataagctatcttggagaacttatgaaaataagctgagaacaacttatggacaat 2719535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 304
Target Start/End: Complemental strand, 36783433 - 36783339
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaaca 304  Q
    |||||||||  |||| ||||| || || |||| | || |||||||||||||| |||||| ||||||||| ||||| |||||||||| ||||||||    
T  36783433 aaataaagtaaaattgttttcatataaactattagctgttttcataagctatattggagcaattatgaatataagctgaaaacagcttatgaaca 36783339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 37689480 - 37689430
Alignment:
Q  214 taaagttcaattattttcgtacaagctataaacttttttcataagctattt 264  Q
    ||||||| |||||||||| || |||||||||||| ||||||||||||||||    
T  37689480 taaagttaaattattttcatataagctataaactattttcataagctattt 37689430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 331
Target Start/End: Original strand, 45541553 - 45541662
Alignment:
Q  222 aattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatt 320  Q
    ||||||||||||| ||||||||   | |||||||||||||| ||||| || |||||| |||||  |||||||||| ||||||| |||||| ||||   ||    
T  45541553 aattattttcgtataagctatagtttattttcataagctatcttggataacttatgagaataacctgaaaacagcttatgaac-atgtcataagctgttt 45541651  T
Q  321 tcataagttct 331  Q
    |||||||||||    
T  45541652 tcataagttct 45541662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 296
Target Start/End: Original strand, 37788831 - 37788916
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatttggagaaattatgaaaataagatgaaaacagca 296  Q
    ||||||||| |||||||||||||| || ||||||  | ||||||||||||||||| |||  ||||||| || || | |||||||||    
T  37788831 aaataaagtccaattattttcgtataatctataagttgttttcataagctatttgaagagtttatgaacatcagcttaaaacagca 37788916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 50600252 - 50600192
Alignment:
Q  236 aagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagc 295  Q
    ||||||||| || ||||||| |||||| |||||||| ||||||||||||| ||||||||||    
T  50600252 aagctataagctgttttcatcagctatattggagaacttatgaaaataagctgaaaacagc 50600192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 337
Target Start/End: Original strand, 20880452 - 20880574
Alignment:
Q  216 aagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaag 314  Q
    ||||| |||| |||| ||| | |||||||||| |||| | ||||||| |||||||| ||||||||||||| | |||| ||| |||||| | ||||| |||    
T  20880452 aagttaaattgtttttgtatatgctataaactgtttttaaaagctatattggagaacttatgaaaataagctcaaaaaagcttatgaaaattgtcataag 20880551  T
Q  315 ccaatttcataagttctctcaaa 337  Q
    |   ||||||| |||||| ||||    
T  20880552 ctgttttcataggttctcccaaa 20880574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 34254881 - 34254827
Alignment:
Q  237 agctataaacttttttcataagctatt-tggagaaattatgaaaataagatgaaa 290  Q
    ||||||||||| ||||||||||||||| ||||||| ||||| ||||||| |||||    
T  34254881 agctataaactattttcataagctattctggagaacttatgtaaataagctgaaa 34254827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 37273135 - 37273188
Alignment:
Q  241 ataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaaca 293  Q
    ||||||| |||||||||||||| |||||||| ||||| ||||||| ||||||||    
T  37273135 ataaactgttttcataagctatcttggagaacttatggaaataagttgaaaaca 37273188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 25447343 - 25447247
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatttggagaaattatgaaaataagatgaaaacagcatatgaacaatg 307  Q
    ||||||| || |||| |||| ||| |||||||||||| |||||||||||||| | ||    |||||| || ||| |||||||||| | |||||||||    
T  25447343 aaataaacttaaattgtttttgtataagctataaactgttttcataagctatcttgatttcttatgagaaaaagctgaaaacagcttgtgaacaatg 25447247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 311
Target Start/End: Original strand, 32582740 - 32582816
Alignment:
Q  236 aagctataaacttttttcataagctattt-ggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcac 311  Q
    |||||| || || |||||||||||||||| |||||| ||||| ||||||| |||||| | | | |||||||||||||    
T  32582740 aagctacaagctgttttcataagctattttggagaacttatggaaataagttgaaaaaatcttttgaacaatgtcac 32582816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 236 - 315
Target Start/End: Original strand, 7984965 - 7985045
Alignment:
Q  236 aagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagc 315  Q
    ||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||||| ||||||||| |||||||||    
T  7984965 aagctataagcttttttcataagctatcttggagaatttatgaaaataagctgaaaacagcttatgaacaacgtcacaagc 7985045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 211 - 337
Target Start/End: Original strand, 39105435 - 39105562
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||| ||||| |||| |||||||| ||||||||| || |||||||||||||| |||||||| ||||||||||||| | |||| ||| |||||||||||||    
T  39105435 aaatgaagttaaattgttttcgtataagctataatctgttttcataagctatcttggagaacttatgaaaataagctaaaaatagcttatgaacaatgtc 39105534  T
Q  310 acaagccaatttcataagttctctcaaa 337  Q
    | ||||   |||||||| ||||| ||||    
T  39105535 ataagctgttttcataaattctcccaaa 39105562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 12425542 - 12425625
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaaca 293  Q
    |||||||||| |||| |||||||| ||||||||| || |||||| ||||||| |||||||| ||||||||||||| ||||||||    
T  12425542 aaataaagttaaattgttttcgtataagctataagctgttttcacaagctatcttggagaacttatgaaaataagttgaaaaca 12425625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 315
Target Start/End: Complemental strand, 9202847 - 9202742
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||||||||| |||| ||||| || |||| |||| || |||||||||| ||| ||| |||| ||||||||||||| || ||||||| |||||||||||||    
T  9202847 aaataaagttaaattgttttcatataagcaataagctgttttcataagttatcttgaagaacttatgaaaataagctggaaacagcttatgaacaatgtc 9202748  T
Q  310 acaagc 315  Q
    | ||||    
T  9202747 ataagc 9202742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 210 - 303
Target Start/End: Complemental strand, 6587207 - 6587113
Alignment:
Q  210 taaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaac 303  Q
    |||||||| ||||||| |||||||| |||||||||  | ||||||||||||||  ||||||| || |||||||||| || ||||||| |||||||    
T  6587207 taaataaacttcaattgttttcgtataagctataagttgttttcataagctatagtggagaacttgtgaaaataagctgtaaacagcttatgaac 6587113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 339
Target Start/End: Original strand, 28776980 - 28777093
Alignment:
Q  227 ttttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcata 325  Q
    |||||||| | ||||||| || |||||||||||||| |||||||| | ||||||||||||| |||| ||  | |||||||||||| || | | ||| |||    
T  28776980 ttttcgtataggctataagctgttttcataagctatcttggagaactaatgaaaataagataaaaatagtttttgaacaatgtcataaactatttttata 28777079  T
Q  326 agttctctcaaaca 339  Q
    ||||||| ||||||    
T  28777080 agttctcacaaaca 28777093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 4014485 - 4014429
Alignment:
Q  249 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaaca 304  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||||| ||||||||    
T  4014485 ttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttatgaaca 4014429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 341
Target Start/End: Original strand, 42100321 - 42100413
Alignment:
Q  250 tttcataagctatttg-gagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaacagt 341  Q
    |||| ||||||||||  ||||| |||||||||||||||||||||| | | ||||| |||||| |||| | ||||| ||||||||||| |||||    
T  42100321 tttcgtaagctatttttgagaacttatgaaaataagatgaaaacaccttttgaactatgtcataagctattttcacaagttctctcacacagt 42100413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 7808540 - 7808607
Alignment:
Q  274 atgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaacagt 341  Q
    ||||||||||| |||||||||| |||||||||||| | |||| | ||||||||| |||| ||||||||    
T  7808540 atgaaaataagctgaaaacagcttatgaacaatgttataagctattttcataagctctcccaaacagt 7808607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 337
Target Start/End: Complemental strand, 17258982 - 17258856
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatt-tggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||||||||  || ||||||||||||| | |||| || ||||||||| ||||  || |||  ||||||||||||| |||||||||| ||||||| |||||    
T  17258982 aaataaagtcaaactattttcgtacaatcaataagctgttttcataaactatcctgaagagcttatgaaaataagctgaaaacagcttatgaac-atgtc 17258884  T
Q  310 acaagccaatttcataagttctctcaaa 337  Q
    | |||| | ||||||| |||||| ||||    
T  17258883 ataagctattttcataggttctcccaaa 17258856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 341
Target Start/End: Original strand, 36639509 - 36639623
Alignment:
Q  227 ttttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcata 325  Q
    ||||| |||||| |||| ||| |||||||||||||| ||| |||  |||||||||||||| ||||||| | |||| || | |||| |||| | |||| ||    
T  36639509 ttttcatacaagttatagactgttttcataagctatcttgaagagcttatgaaaataagaggaaaacaacttatggac-acgtcataagcaattttcgta 36639607  T
Q  326 agttctctcaaacagt 341  Q
    ||||||||||||||||    
T  36639608 agttctctcaaacagt 36639623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 1619062 - 1619144
Alignment:
Q  212 aataaagttcaattattttcgtacaagctataaacttttttcataagctatttggagaaattatgaaaataagatgaaaacag 294  Q
    ||||||||| |||| ||| |||| ||||||||| || ||||||||||| |||||||||   ||||||||| || |||||||||    
T  1619062 aataaagttaaattctttccgtataagctataagctgttttcataagccatttggagagcatatgaaaatcagctgaaaacag 1619144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 290
Target Start/End: Original strand, 7319379 - 7319457
Alignment:
Q  213 ataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaa 290  Q
    |||||||| |||| ||||| || |||||||||||| ||||| |||||||| |||||||| |||| |||||||| |||||    
T  7319379 ataaagttaaattgttttcatataagctataaactgttttcgtaagctatcttggagaacttataaaaataagctgaaa 7319457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 338
Target Start/End: Original strand, 29925854 - 29925940
Alignment:
Q  253 cataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaac 338  Q
    |||||||||| |||||||| ||||||||||||| |||||| | || ||||||| ||||| ||||   |||||||||||||| |||||    
T  29925854 cataagctatattggagaacttatgaaaataagttgaaaaaaacacatgaacattgtcataagctgttttcataagttctcccaaac 29925940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 315
Target Start/End: Original strand, 34160713 - 34160807
Alignment:
Q  222 aattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagc 315  Q
    |||| |||||||| ||  ||||| || ||||||| || ||| |||||||| ||||||||||||| |||||||||  |||||||| ||||||||||    
T  34160713 aattcttttcgtaaaatttataagctattttcattagatatcttggagaacttatgaaaataagctgaaaacagtttatgaacagtgtcacaagc 34160807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 7319078 - 7319011
Alignment:
Q  240 tataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaat 306  Q
    |||||||| |||||||||||||| |||||||| ||||||||||||| ||| |||| | |||| |||||    
T  7319078 tataaactgttttcataagctatcttggagaacttatgaaaataagctgagaacaacttatggacaat 7319011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 7674619 - 7674702
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaaca 293  Q
    ||||||| || |||| ||||| || |||| ||||| | |||||||||||||| |||||||| || |||||||||| ||||||||    
T  7674619 aaataaatttaaattgttttcttataagccataaaatgttttcataagctatcttggagaatttgtgaaaataagctgaaaaca 7674702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 37611276 - 37611186
Alignment:
Q  249 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaaca 339  Q
    |||||||||||||| |||||||  ||||| ||||||  |||||||||| |||||||| |||||||||    ||||||||| |||||||||||    
T  37611276 ttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaaca-tgtcacaagttgttttcataagctctctcaaaca 37611186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 37788006 - 37787916
Alignment:
Q  249 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaaca 339  Q
    |||||||||||||| |||||||  ||||| ||||||  |||||||||| |||||||| |||||||||    ||||||||| |||||||||||    
T  37788006 ttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaaca-tgtcacaagttgttttcataagctctctcaaaca 37787916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 334
Target Start/End: Original strand, 17368685 - 17368770
Alignment:
Q  249 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctc 334  Q
    |||||||||||||| |||||||  ||||| ||||||| ||||||| |||||||||| |||||| |||    ||||||||||||||||    
T  17368685 ttttcataagctatcttggagaggttatggaaataagctgaaaactgcatatgaac-atgtcataagttgttttcataagttctctc 17368770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 10639976 - 10640053
Alignment:
Q  262 tttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaaca 339  Q
    ||||||||| ||||||||||||| |  ||| ||| |||||| ||||||| ||||   |||||||||||||| ||||||    
T  10639976 tttggagaacttatgaaaataagctagaaaaagcttatgaaaaatgtcataagctgttttcataagttctcccaaaca 10640053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 25461390 - 25461321
Alignment:
Q  236 aagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaaca 304  Q
    |||||||||||| ||||||||| |||| |||| | | ||||||||||||| ||||||||||  |||||||    
T  25461390 aagctataaactgttttcataacctatcttggcgtatttatgaaaataagctgaaaacagctaatgaaca 25461321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 2563186 - 2563254
Alignment:
Q  216 aagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataa 283  Q
    |||||||||| |||| ||| |||||||||||| |||||| ||||||| |||||||   |||||||||||    
T  2563186 aagttcaattgtttttgtataagctataaactattttcacaagctatcttggagagtctatgaaaataa 2563254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 6096575 - 6096623
Alignment:
Q  267 agaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagc 315  Q
    |||| |||||||||| || ||| |||||| |||||||||||||||||||    
T  6096575 agaatttatgaaaatgagctgagaacagcttatgaacaatgtcacaagc 6096623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 293
Target Start/End: Complemental strand, 10272519 - 10272447
Alignment:
Q  222 aattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaaca 293  Q
    |||| |||||||| |||||||||  | ||||||||||| || |||||||  ||||||||||||| ||||||||    
T  10272519 aattgttttcgtataagctataagttgttttcataagccatcttggagagtttatgaaaataagctgaaaaca 10272447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 18637103 - 18637039
Alignment:
Q  227 ttttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaa 290  Q
    |||||||| ||||||||| || ||||||| |||||| ||| ||| |||||||||||||| |||||    
T  18637103 ttttcgtataagctataagctattttcattagctatcttgaagatattatgaaaataagctgaaa 18637039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 32408680 - 32408640
Alignment:
Q  222 aattattttcgtacaagctataaacttttttcataagctat 262  Q
    |||||||||| || |||||||||||| ||||||||||||||    
T  32408680 aattattttcatataagctataaactattttcataagctat 32408640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 310
Target Start/End: Original strand, 35446026 - 35446126
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatt-tggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||||||||| |||| |||| ||| | ||||||| || || ||||||||  || ||||||| ||||||||||||| |||||| ||| || ||| ||||||    
T  35446026 aaataaagttaaattgtttttgtatacgctataacctcttctcataagcatttgtggagaacttatgaaaataagctgaaaaaagcttacgaaaaatgtc 35446125  T
Q  310 a 310  Q
    |    
T  35446126 a 35446126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 310
Target Start/End: Complemental strand, 40119963 - 40119867
Alignment:
Q  215 aaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtca 310  Q
    |||||| |||||||| |||| ||||||||| || ||||||||||| || ||||| || || |||||||||  | | |||||| | ||||||||||||    
T  40119963 aaagttgaattatttccgtataagctataacctgttttcataagcgatcttggataacttgtgaaaataatctaagaacagcttgtgaacaatgtca 40119867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 211 - 341
Target Start/End: Original strand, 2735040 - 2735171
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||||||||| ||||||||| ||| || |||||| || ||||||||||| || ||| | || |||||||||||||  ||||||||| |||||| ||||||    
T  2735040 aaataaagttaaattatttttgtataatctataagctgttttcataagcaatcttgaacaacttatgaaaataagccgaaaacagcttatgaaaaatgtc 2735139  T
Q  310 acaagccaatttcataagttctctcaaacagt 341  Q
    | |||||  ||||||||||| |||||||||||    
T  2735140 ataagccgttttcataagttatctcaaacagt 2735171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 211 - 337
Target Start/End: Complemental strand, 9093655 - 9093528
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||||||||| |||| |||||||| ||||||||| || |||||||||||| | || ||||| ||| ||||||||| |||||||||  ||| |||||||||    
T  9093655 aaataaagttaaattgttttcgtataagctataagctgttttcataagctgtcttagagaacttaagaaaataagctgaaaacaggttattaacaatgtc 9093556  T
Q  310 acaagccaatttcataagttctctcaaa 337  Q
    | |||| | ||||||||| |||| ||||    
T  9093555 ataagctattttcataagctctcacaaa 9093528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 331
Target Start/End: Original strand, 31624086 - 31624181
Alignment:
Q  236 aagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttct 331  Q
    ||||||||| || |||||||| ||||| |||||||||||||||||||||| |||||||||| ||||||| |||||| ||||   |||||||||||||    
T  31624086 aagctataagctgttttcataggctatcttggagaaattatgaaaataagttgaaaacagcttatgaac-atgtcataagctgttttcataagttct 31624181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 338
Target Start/End: Original strand, 13907557 - 13907684
Alignment:
Q  212 aataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtca 310  Q
    ||||||||| | ||| ||||||| || ||||||  | ||||||||||| || |||||||||||||||||||||  |||||| | | | ||||||||||||    
T  13907557 aataaagttaatttactttcgtataacctataagttgttttcataagccatcttggagaaattatgaaaataaactgaaaataacttgtgaacaatgtca 13907656  T
Q  311 caagccaatttcataagttctctcaaac 338  Q
     ||||   |||||||| |||||||||||    
T  13907657 gaagctgttttcataaattctctcaaac 13907684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 9912237 - 9912159
Alignment:
Q  263 ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaacagt 341  Q
    |||||||| ||||||||||||| | |||||||| |||||||||||||| ||||   ||||||||||||||  |||||||    
T  9912237 ttggagaacttatgaaaataagctcaaaacagcttatgaacaatgtcataagctggtttcataagttctccgaaacagt 9912159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 337
Target Start/End: Original strand, 31813174 - 31813259
Alignment:
Q  253 cataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaa 337  Q
    |||||||||| ||||||||  |||||||||||| ||||||| || |||||||||| ||| |||| | |||||||||||||| ||||    
T  31813174 cataagctatcttggagaacatatgaaaataagctgaaaacggcttatgaacaatctcataagcaattttcataagttctcccaaa 31813259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 304
Target Start/End: Original strand, 769110 - 769203
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatttggagaaattatgaaaataagatgaaaacagcatatgaaca 304  Q
    |||||||||| | || |||| ||| |||||||||||| |||||||||||||  | ||| | ||| |||| |||| |||||||||| ||||||||    
T  769110 aaataaagttaatttttttttgtataagctataaactgttttcataagctaacttgaggacttaagaaagtaagttgaaaacagcttatgaaca 769203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 34430522 - 34430455
Alignment:
Q  249 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagc 315  Q
    |||||||||||||| |||||||| ||||||||||||| |||||| ||| |||||  ||||||| ||||    
T  34430522 ttttcataagctatcttggagaagttatgaaaataagctgaaaaaagcttatgataaatgtcataagc 34430455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 295
Target Start/End: Complemental strand, 8365076 - 8364990
Alignment:
Q  210 taaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagc 295  Q
    ||||| |||||||||| ||||  || ||| |||||||| ||||||||||||||  ||| ||| | ||||||||||| ||||||||||    
T  8365076 taaattaagttcaattgtttttatataagttataaactgttttcataagctatcatggtgaactgatgaaaataagctgaaaacagc 8364990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 835310 - 835265
Alignment:
Q  249 ttttcataagctat-ttggagaaattatgaaaataagatgaaaaca 293  Q
    |||||||||||||| |||||||| ||||||||||||| ||||||||    
T  835310 ttttcataagctatcttggagaacttatgaaaataagctgaaaaca 835265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 341
Target Start/End: Original strand, 2454991 - 2455090
Alignment:
Q  242 taaacttttttc--ataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaac 338  Q
    ||||||||||||  ||||| ||| |||||||| | ||||||||||| |||||||||  |||||||||||||| |||    ||||| |||||||| |||||    
T  2454991 taaacttttttcgtataagttatgttggagaactaatgaaaataagctgaaaacaggttatgaacaatgtcataag---ttttcagaagttctcccaaac 2455087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 9109325 - 9109252
Alignment:
Q  236 aagctataaacttttttcataagcta-tttggagaaattatgaaaataagatgaaaacagcatatgaacaatgt 308  Q
    ||||||||| || ||||||| | ||| |||||||||  |||||||||||| |||||||| | ||||||||||||    
T  9109325 aagctataagctgttttcattaactaatttggagaacctatgaaaataaggtgaaaacaacttatgaacaatgt 9109252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 211 - 337
Target Start/End: Original strand, 1625871 - 1625998
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||||||||| |||| |||||||| ||| |||||  | |||||||||||||| |||||||| ||| |||||| || |||||||| | |||||||| ||||    
T  1625871 aaataaagttaaattgttttcgtataagttataagttgttttcataagctatcttggagaacttacgaaaatcagctgaaaacatcttatgaacattgtc 1625970  T
Q  310 acaagccaatttcataagttctctcaaa 337  Q
    | |||| | |||||||||||||||||||    
T  1625971 ataagctactttcataagttctctcaaa 1625998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 211 - 329
Target Start/End: Original strand, 18066099 - 18066218
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||||||||| |||| ||||| || ||||||||| || |||||||||||||| |||||||| ||| ||||||||| |||||| ||| ||||| |||||||    
T  18066099 aaataaagttaaattgttttcatataagctataagctgttttcataagctatcttggagaacttaagaaaataaggtgaaaatagcttatgagcaatgtc 18066198  T
Q  310 acaagccaatttcataagtt 329  Q
    | ||||   |||||||||||    
T  18066199 ataagctgttttcataagtt 18066218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 215 - 341
Target Start/End: Original strand, 26626848 - 26626975
Alignment:
Q  215 aaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaa 313  Q
    |||||| |||| |||||||| |||||| || || |||||||||||||| ||| |||| ||||||||||||  |||||||||  |||||||||||||| ||    
T  26626848 aaagttaaattgttttcgtataagctagaagctgttttcataagctatcttgcagaacttatgaaaataacctgaaaacagattatgaacaatgtcataa 26626947  T
Q  314 gccaatttcataagttctctcaaacagt 341  Q
    || | |||| ||||||||| || |||||    
T  26626948 gctattttcgtaagttctcccatacagt 26626975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 40682455 - 40682365
Alignment:
Q  249 ttttcataagctatttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaaca 339  Q
    |||||||||| ||| | ||||| ||||||||||||| |||||||| | |||||||||||||| |||| | ||| | |||||||| ||||||    
T  40682455 ttttcataagatatcttgagaacttatgaaaataagttgaaaacaacttatgaacaatgtcataagctattttaacaagttctcccaaaca 40682365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 8017409 - 8017477
Alignment:
Q  215 aaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaata 282  Q
    |||||| |||||||||| || ||||| |||||| |||||||||||||| |||||||| |||||||||||    
T  8017409 aaagttaaattattttcatataagctgtaaactgttttcataagctatcttggagaacttatgaaaata 8017477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 387
Target Start/End: Original strand, 2142636 - 2142802
Alignment:
Q  223 attattttcgtacaagctataaacttttttcataagctattt--ggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatt 320  Q
    |||||||| ||| |||||||||  | |||||||||  ||| |  |||||| ||||||||||||| | ||||||||  ||||||| ||||||||     ||    
T  2142636 attatttttgtataagctataagttgttttcataatttatcttgggagaatttatgaaaataagctaaaaacagctaatgaacattgtcacaacttgttt 2142735  T
Q  321 tcataagttctctcaaacagttcgatagaacttacgcaagttgataaatttaaataagtcaatccaa 387  Q
    |||||||||||| ||||||||   ||| |||||| ||| || |||||| | ||||||||||| ||||    
T  2142736 tcataagttctcccaaacagtctcataaaacttatgcatgtagataaactcaaataagtcaaaccaa 2142802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 331
Target Start/End: Original strand, 750680 - 750762
Alignment:
Q  250 tttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttct 331  Q
    ||||||||||||| |||||||| ||||| ||||||| | |||||||| ||||||||||||||  |||   |||||||||||||    
T  750680 tttcataagctatcttggagaacttatgcaaataagctcaaaacagcttatgaacaatgtcattagctcttttcataagttct 750762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 680485 - 680558
Alignment:
Q  222 aattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacag 294  Q
    |||| |||||||| ||||||||| || |||||||||||||| ||| |||| || |||||||||| |||||||||    
T  680485 aattgttttcgtataagctataagctattttcataagctatcttgaagaacttgtgaaaataagctgaaaacag 680558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 291
Target Start/End: Complemental strand, 12464572 - 12464491
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaa 291  Q
    |||||||||| |||| |||| ||| | ||||||| || |||||||||||||| |||||||| || |||||||||| ||||||    
T  12464572 aaataaagttaaattgtttttgtatatgctataagctattttcataagctatcttggagaacttgtgaaaataagctgaaaa 12464491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 341
Target Start/End: Complemental strand, 26143740 - 26143608
Alignment:
Q  211 aaataaagttcaattattttcgtacaag-ctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgt 308  Q
    ||||||||||||||||| |||||| ||  || ||| || |||||||||||||  |||||||| ||||||||||||| |||||| | | | |||||||||     
T  26143740 aaataaagttcaattatattcgtaaaaaactgtaagctgttttcataagctaacttggagaacttatgaaaataagctgaaaataacctgtgaacaatga 26143641  T
Q  309 cacaagccaatttcataagttctctcaaacagt 341  Q
    || |||    |||| ||||||||| ||||||||    
T  26143640 cataagttgttttcgtaagttctcccaaacagt 26143608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 40279416 - 40279476
Alignment:
Q  249 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgt 308  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||||  |||| |||||||    
T  40279416 ttttcataagctatattggagaacttatgaaaataagttgaaaacagtttatggacaatgt 40279476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 338
Target Start/End: Original strand, 16451118 - 16451217
Alignment:
Q  240 tataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaac 338  Q
    ||||| || ||||| |||||||| |||||||| |  |||||||||| ||||||||||  ||||||||||||| |||    |||||||||||||| |||||    
T  16451118 tataagctgttttcgtaagctatcttggagaactcgtgaaaataagctgaaaacagctcatgaacaatgtcataagttgttttcataagttctcccaaac 16451217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 304
Target Start/End: Complemental strand, 18962137 - 18962042
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaat-aagatgaaaacagcatatgaaca 304  Q
    |||||||||| || | ||||| || |||||||||||| ||||||||||||||  |||||| | |||| |||| ||| ||||||||||| |||||||    
T  18962137 aaataaagttaaactgttttcatataagctataaactattttcataagctatcatggagagactatggaaataaagctgaaaacagcacatgaaca 18962042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 28039431 - 28039336
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaa 305  Q
    ||||||||| ||||| ||||| || || |||||| |  |||||||||||| | ||||| || ||||| ||||||| |||||||||| |||||||||    
T  28039431 aaataaagtccaattgttttcatataaactataagcaattttcataagctttcttggaaaagttatggaaataagctgaaaacagcttatgaacaa 28039336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 40279276 - 40279335
Alignment:
Q  249 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatg 307  Q
    |||||||||||||| |||||||| |||||||||| || |||||||||  |||||||||||    
T  40279276 ttttcataagctatattggagaacttatgaaaattagctgaaaacagtttatgaacaatg 40279335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 40279346 - 40279405
Alignment:
Q  249 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatg 307  Q
    |||||||||||||| |||||||| |||||||||| || |||||||||  |||||||||||    
T  40279346 ttttcataagctatattggagaacttatgaaaattagctgaaaacagtttatgaacaatg 40279405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 7928345 - 7928299
Alignment:
Q  263 ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||||||| ||||||||||||| |||||||| | |||||||||||||    
T  7928345 ttggagaacttatgaaaataagctgaaaacaacttatgaacaatgtc 7928299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 304
Target Start/End: Complemental strand, 12313272 - 12313178
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaaca 304  Q
    |||||||||| ||||||||| ||  |||||| ||| | ||| |||||||||| |||||||  ||||||||||||| ||||| || | ||||||||    
T  12313272 aaataaagttaaattatttttgtttaagctacaaattgtttacataagctatcttggagagcttatgaaaataaggtgaaatcaacttatgaaca 12313178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 16398123 - 16398185
Alignment:
Q  249 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtca 310  Q
    |||||||||| ||| |||||||| ||||||||||||| |||||||||| || || ||||||||    
T  16398123 ttttcataagttatgttggagaacttatgaaaataagctgaaaacagcttacgagcaatgtca 16398185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 43868331 - 43868289
Alignment:
Q  251 ttcataagctatttggagaaattatgaaaataagatgaaaaca 293  Q
    |||||||||||||||||||| ||||||||||||| | ||||||    
T  43868331 ttcataagctatttggagaacttatgaaaataagctaaaaaca 43868289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 338
Target Start/End: Original strand, 45229520 - 45229610
Alignment:
Q  249 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaac 338  Q
    |||||||||||||| || ||||| ||||||||||||| |||||| |||  ||||| ||||||| |||    |||||||||||||| |||||    
T  45229520 ttttcataagctatcttcgagaacttatgaaaataagctgaaaaaagctaatgaaaaatgtcataaggtcttttcataagttctcccaaac 45229610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 10646350 - 10646297
Alignment:
Q  249 ttttcataagctatttg-gagaaattatgaaaataagatgaaaacagcatatga 301  Q
    ||||||||||||||||  ||||| ||||||||||||||||||||| || |||||    
T  10646350 ttttcataagctattttagagaacttatgaaaataagatgaaaactgcttatga 10646297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 15977994 - 15978039
Alignment:
Q  249 ttttcataagctattt-ggagaaattatgaaaataagatgaaaaca 293  Q
    |||||||||||||||| ||||| |||||||||||||| ||||||||    
T  15977994 ttttcataagctattttggagagattatgaaaataagctgaaaaca 15978039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 33319883 - 33319830
Alignment:
Q  239 ctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaa 291  Q
    ||||||||| ||||||||| |||| |||||||| ||||||||||||| ||||||    
T  33319883 ctataaactgttttcataaactatcttggagaacttatgaaaataagctgaaaa 33319830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 35379077 - 35379020
Alignment:
Q  249 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaa 305  Q
    |||||||||||||| |||||||  ||||||||||||| |||||||| | |||||||||    
T  35379077 ttttcataagctatcttggagagcttatgaaaataagctgaaaacaacttatgaacaa 35379020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 309
Target Start/End: Original strand, 36043881 - 36043974
Alignment:
Q  217 agttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||| |||| |||||||| |||||||||||| | ||||| || ||| |||||||  |||||||| | || | |||||||| |||||||||||||    
T  36043881 agttaaattgttttcgtataagctataaactgtcttcattagttatcttggagagcttatgaaattgagctaaaaacagcttatgaacaatgtc 36043974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 307
Target Start/End: Original strand, 40279168 - 40279265
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatg 307  Q
    |||| ||||| |||| |||| ||| ||| |||||  | |||||||||||||| |||||||| |||||||||| || |||||| ||  |||||||||||    
T  40279168 aaatgaagttaaattgttttggtataagatataagttgttttcataagctatgttggagaacttatgaaaattagctgaaaatagtttatgaacaatg 40279265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 310
Target Start/End: Original strand, 3611197 - 3611297
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||||||||| |||| |||| ||| |   |||| ||| |||||| ||||||| |||||||| ||||||||||||| | |||||||  |||||| ||||||    
T  3611197 aaataaagttaaattgtttttgtatagtttatagactgttttcacaagctatcttggagaacttatgaaaataagctaaaaacagtttatgaataatgtc 3611296  T
Q  310 a 310  Q
    |    
T  3611297 a 3611297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 9174814 - 9174886
Alignment:
Q  239 ctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtca 310  Q
    |||||| || |||||||||||||| ||  |||  ||||||||||||| |||||| ||| ||||||||||||||    
T  9174814 ctataagctgttttcataagctatcttacagagcttatgaaaataagctgaaaatagcttatgaacaatgtca 9174886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 21788341 - 21788385
Alignment:
Q  266 gagaaattatgaaaataagatgaaaacagcatatgaacaatgtca 310  Q
    ||||| ||||||||||||| |||||||| || |||||||||||||    
T  21788341 gagaacttatgaaaataagttgaaaacaacaaatgaacaatgtca 21788385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 43511111 - 43511151
Alignment:
Q  265 ggagaaattatgaaaataagatgaaaacagcatatgaacaa 305  Q
    |||||| ||||||||||||| |||||||||| |||||||||    
T  43511111 ggagaacttatgaaaataagctgaaaacagcttatgaacaa 43511151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 211 - 341
Target Start/End: Original strand, 20526417 - 20526548
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagcta-tttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||||||||| |||||| || ||||| ||||||| || ||||||||||||| ||||||||| | ||||||||||| | |||||||| || ||| |||||     
T  20526417 aaataaagttaaattatgtttgtacatgctataagctgttttcataagctattttggagaactaatgaaaataagctaaaaacagcttacgaaaaatgtg 20526516  T
Q  310 acaagccaatttcataagttctctcaaacagt 341  Q
    | || |   |||||||||||||||||||||||    
T  20526517 ataaactgttttcataagttctctcaaacagt 20526548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 211 - 332
Target Start/End: Original strand, 39967891 - 39968013
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatttg-gagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    ||||||| || |||| ||||||||| ||||||||  | |||||||||||||| || ||||| | ||||||||||| |||||||||| ||||||||||| |    
T  39967891 aaataaacttaaattgttttcgtactagctataagttgttttcataagctatctgagagaactaatgaaaataagttgaaaacagcttatgaacaatgcc 39967990  T
Q  310 acaagccaatttcataagttctc 332  Q
    | ||||   ||||||||||||||    
T  39967991 ataagctgttttcataagttctc 39968013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 36517579 - 36517650
Alignment:
Q  240 tataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtca 310  Q
    |||||||| |||||||||||||| |||||||||||||||||||||  |||||| ||| ||||||||||||||    
T  36517579 tataaactattttcataagctatcttggagaaattatgaaaataaactgaaaatagcttatgaacaatgtca 36517650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 39393665 - 39393603
Alignment:
Q  222 aattattttcgtacaagctataaacttttttcataagctatttggagaaattatgaaaataag 284  Q
    ||||||||| |||  ||||||||  |||||||||||||||||||||||| |||||||||||||    
T  39393665 aattatttttgtatgagctataagtttttttcataagctatttggagaacttatgaaaataag 39393603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 214 - 386
Target Start/End: Original strand, 33678754 - 33678927
Alignment:
Q  214 taaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcaca 312  Q
    ||||||| |||  |||| ||| ||||||||| || |||||||||||||| ||||| || || |||||||||| |||||||| |  ||||||||||| | |    
T  33678754 taaagttaaatggtttttgtaaaagctataagctgttttcataagctatcttggaaaacttgtgaaaataagttgaaaacatctcatgaacaatgttata 33678853  T
Q  313 agccaatttcataagttctctcaaacagttcgatagaacttacgcaagttgataaatttaaataagtcaatcca 386  Q
    ||    |||||||||||||| ||||  ||   | | |||||| |||||| ||||| |||||||||| |||||||    
T  33678854 agttgttttcataagttctcccaaattgtctcacaaaacttatgcaagtagataagtttaaataagccaatcca 33678927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 302
Target Start/End: Complemental strand, 40689085 - 40688993
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaa 302  Q
    |||||||||| |||||||||| || ||||||||| || | ||||||||||||  |||| || ||||||||||||| | |||||||| ||||||    
T  40689085 aaataaagttaaattattttcatataagctataagctgtgttcataagctatcctggataacttatgaaaataagctcaaaacagcttatgaa 40688993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 341
Target Start/End: Original strand, 39907774 - 39907903
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||||| ||| |||| |||| ||| |||||||||||| ||||||||| |||| || ||||| | ||||||||||| ||||||||||  ||||||| || |    
T  39907774 aaataaggttaaattgtttttgtataagctataaactgttttcataaactatcttagagaactaatgaaaataagctgaaaacagctaatgaaca-tg-c 39907871  T
Q  310 acaagccaatttcataagttctctcaaacagt 341  Q
    | ||||  |||| | |||||||||||||||||    
T  39907872 ataagctcattttacaagttctctcaaacagt 39907903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 44821930 - 44822013
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatt-tggagaaattatgaaaataagatgaaaaca 293  Q
    |||||||||  |||| |||| ||| ||| ||||| || ||||||||||||||| ||||||| ||||||||||||| ||||||||    
T  44821930 aaataaagtcaaattgtttttgtataagttataagctgttttcataagctattctggagaacttatgaaaataagttgaaaaca 44822013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 341
Target Start/End: Complemental strand, 20527011 - 20526897
Alignment:
Q  228 tttcgtacaagctataaacttttttcataagctatt-tggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataa 326  Q
    ||||||| |||||| || || ||||||||||||||  || |||| ||||||||||||| |||||| | | ||| |||||| ||| ||||   |||||| |    
T  20527011 tttcgtaaaagctacaagctgttttcataagctatagtgtagaacttatgaaaataagctgaaaagatcttataaacaatctcataagctgttttcatca 20526912  T
Q  327 gttctctcaaacagt 341  Q
    |||||||||||||||    
T  20526911 gttctctcaaacagt 20526897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 25596032 - 25596087
Alignment:
Q  239 ctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaaca 293  Q
    ||||||||| |||||||||||||| |||||||  ||||||||||||| ||||||||    
T  25596032 ctataaactcttttcataagctatcttggagagcttatgaaaataagttgaaaaca 25596087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 34035926 - 34036009
Alignment:
Q  249 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttct 331  Q
    |||||||||||||| || ||||| ||  ||||||||| |||||||| | |||||||||||||| |||  | |||||||||||||    
T  34035926 ttttcataagctatcttagagaacttgcgaaaataagttgaaaacaacttatgaacaatgtcataagttattttcataagttct 34036009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 341
Target Start/End: Original strand, 17248530 - 17248654
Alignment:
Q  215 aaagttcaattattttcgtacaagctataaacttttttcataagctatttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaag 314  Q
    |||||| |||| |||| ||| ||||||||| || |||||||||| | || | |||| ||||||||||||| | ||| |||| |||||||||||| | |||    
T  17248530 aaagttaaattgtttttgtataagctataagctcttttcataagatcttag-agaacttatgaaaataaggt-aaatcagcttatgaacaatgttataag 17248627  T
Q  315 ccaatttcataagttctctcaaacagt 341  Q
    |   ||| |||||||||| ||||||||    
T  17248628 ctgtttttataagttctcccaaacagt 17248654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 341
Target Start/End: Complemental strand, 44989739 - 44989645
Alignment:
Q  249 ttttcataagctat-ttggagaaattatgaaaataagatg-aaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaacagt 341  Q
    |||||||||| ||| ||| |||||||||||||||||| || |||||||| | |||||||||||| |||    ||||||||||| || ||||||||    
T  44989739 ttttcataagatatcttgtagaaattatgaaaataagctgcaaaacagcttgtgaacaatgtcagaagttgttttcataagttttcccaaacagt 44989645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 47177611 - 47177681
Alignment:
Q  215 aaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataag 284  Q
    |||||| |||| ||||| || ||||||||| || |||||| ||||||| |||||||| |||||||||||||    
T  47177611 aaagttaaattgttttcatataagctataagctgttttcaaaagctatcttggagaatttatgaaaataag 47177681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 283
Target Start/End: Original strand, 12110331 - 12110404
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataa 283  Q
    |||||||||  |||| |||| ||| ||||||||| || |||||||||||||| ||| |||| ||||||||||||    
T  12110331 aaataaagtcaaattgttttggtataagctataagctgttttcataagctatcttgaagaacttatgaaaataa 12110404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 22283843 - 22283758
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagc 295  Q
    |||||||||| |||| |||| |||  ||||||||||| ||||||||| | || || ||||| ||||| ||||||| ||||||||||    
T  22283843 aaataaagttaaattgtttttgtatcagctataaactgttttcataaaccatcttagagaacttatggaaataagctgaaaacagc 22283758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 43648227 - 43648292
Alignment:
Q  227 ttttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaa 291  Q
    |||||||| | | ||||| || |||||||||||||| ||||||||| |||||||||||| ||||||    
T  43648227 ttttcgtatatgatataagctgttttcataagctatcttggagaaaatatgaaaataagttgaaaa 43648292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 338
Target Start/End: Original strand, 1706593 - 1706721
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||||| |||||||| |||||||| ||||||||| || ||||||||| |||| ||||| |  ||||||||||||| || ||| ||| ||||||||||| |    
T  1706593 aaataatgttcaattgttttcgtagaagctataagctgttttcataaactatcttggacagcttatgaaaataagttggaaatagcttatgaacaatgcc 1706692  T
Q  310 acaagccaatttcataagttctctcaaac 338  Q
    | ||||   |||||||| |||||||||||    
T  1706693 ataagctgttttcataatttctctcaaac 1706721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 211 - 341
Target Start/End: Original strand, 22661980 - 22662112
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaactttt-ttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgt 308  Q
    ||||||||||||||| ||| |||| ||||||||| ||||| ||||||||||||  ||||||| |||||| ||||||  ||||||| |  |||| ||||||    
T  22661980 aaataaagttcaattttttacgtataagctataagcttttcttcataagctatcatggagaacttatgacaataagcagaaaacaactcatgatcaatgt 22662079  T
Q  309 cacaagccaatttcataagttctctcaaacagt 341  Q
    || || |  ||||||||||||| | ||||||||    
T  22662080 cataaactgatttcataagttcccccaaacagt 22662112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 211 - 341
Target Start/End: Original strand, 22666459 - 22666591
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaac-ttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgt 308  Q
    ||||||||||||||| ||| |||| ||||||||| | ||||||||||||||||  ||||||| |||||| ||||||  ||||||| |  |||| ||||||    
T  22666459 aaataaagttcaattttttacgtataagctataagctttttttcataagctatcatggagaacttatgacaataagcagaaaacaactcatgatcaatgt 22666558  T
Q  309 cacaagccaatttcataagttctctcaaacagt 341  Q
    || || |  ||||||||||||| | ||||||||    
T  22666559 cataaactgatttcataagttcccccaaacagt 22666591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 293
Target Start/End: Complemental strand, 28300398 - 28300315
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaaca 293  Q
    |||||||||| |||| |||| ||| |||||||||||| |||||||| ||||| ||| |||  ||||||||||||| ||||||||    
T  28300398 aaataaagttaaattgtttttgtataagctataaactattttcataggctatcttgaagagcttatgaaaataagttgaaaaca 28300315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 51630082 - 51630165
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaaca 293  Q
    |||||||||| |||| ||||  || ||||||||| || |||||||||||||| ||| |||| ||||||||||||| ||||||||    
T  51630082 aaataaagttaaattgttttgatataagctataagctattttcataagctatcttgaagaatttatgaaaataagctgaaaaca 51630165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 55414492 - 55414414
Alignment:
Q  238 gctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagc 315  Q
    |||||||| | |||||||||| ||| |||||||| ||||||||||||| |||||| ||| |||||| ||||||| ||||    
T  55414492 gctataaattgttttcataagttatcttggagaacttatgaaaataagttgaaaaaagcttatgaaaaatgtcataagc 55414414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 307
Target Start/End: Original strand, 3155574 - 3155671
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatg 307  Q
    |||||||||| |||| |||| |||||||||| || || ||||||||| |||| ||| |||| | ||||||||||| |||||||||  || ||||||||    
T  3155574 aaataaagttaaattgtttttgtacaagctacaagctgttttcataaactatcttgaagaactaatgaaaataagctgaaaacagtttacgaacaatg 3155671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 17822926 - 17822842
Alignment:
Q  249 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctc 332  Q
    |||||||||||||| |||||||| ||||||||||||| | |||| ||| |||||| ||||||| ||||   ||||||| ||||||    
T  17822926 ttttcataagctatcttggagaacttatgaaaataagctaaaaaaagcttatgaaaaatgtcataagctgttttcatatgttctc 17822842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 337
Target Start/End: Original strand, 24169261 - 24169361
Alignment:
Q  238 gctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaa 336  Q
    |||||||| | |||||| ||||||| |||||||  ||||||||||||| |||||| | | |||||| ||||||| |||| | ||| | ||||||||||||    
T  24169261 gctataaaatgttttcacaagctatcttggagagcttatgaaaataagttgaaaaaatcttatgaaaaatgtcataagctatttttaaaagttctctcaa 24169360  T
Q  337 a 337  Q
    |    
T  24169361 a 24169361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 309
Target Start/End: Original strand, 40174537 - 40174633
Alignment:
Q  214 taaagttcaattattttcgtacaagctataaacttttttcataagcta-tttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    ||||||| |||| ||||| || ||||||||| || |||||||||||||  |||||||| || ||| |||||| |||||||||  |||| ||||||||    
T  40174537 taaagttaaattgttttcataaaagctataagctgttttcataagctacattggagaacttgtgataataagttgaaaacagtttatggacaatgtc 40174633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 48719428 - 48719362
Alignment:
Q  272 ttatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaaca 339  Q
    ||||||||||||| |||||||||| || |||| |||||| || ||| |||||||||||| ||||||||    
T  48719428 ttatgaaaataagctgaaaacagcttacgaac-atgtcataaaccattttcataagttccctcaaaca 48719362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 294
Target Start/End: Complemental strand, 825551 - 825505
Alignment:
Q  249 ttttcataagctattt-ggagaaattatgaaaataagatgaaaacag 294  Q
    |||||||||||||||| |||||| ||||||||||||| |||||||||    
T  825551 ttttcataagctattttggagaacttatgaaaataagctgaaaacag 825505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 35571714 - 35571636
Alignment:
Q  227 ttttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaaca 304  Q
    |||||||| ||||||||| || |||||||||||||| || ||||| || |||||||||| ||||| ||||  |||||||    
T  35571714 ttttcgtataagctataagctgttttcataagctatcttagagaacttgtgaaaataagttgaaaccagctcatgaaca 35571636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 43932431 - 43932489
Alignment:
Q  236 aagctataaacttttttcataagctatt-tggagaaattatgaaaataagatgaaaaca 293  Q
    |||||||||||| |||||||||| |||| || |||| || |||||||||||||||||||    
T  43932431 aagctataaactattttcataagttattctgaagaacttgtgaaaataagatgaaaaca 43932489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 24091433 - 24091481
Alignment:
Q  210 taaataaagttcaattattttcgtacaagctataaacttttttcataag 258  Q
    ||||||||||  |||||||||| || |||||||||||| ||||||||||    
T  24091433 taaataaagtcaaattattttcatataagctataaactgttttcataag 24091481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 49939981 - 49939929
Alignment:
Q  279 aataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttct 331  Q
    |||||| |||||||||| |||||||||||||| ||||   |||||||||||||    
T  49939981 aataagctgaaaacagcttatgaacaatgtcataagctcttttcataagttct 49939929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 54392920 - 54392836
Alignment:
Q  209 ataaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaac 292  Q
    |||||||||||| |||| |||| ||| | ||||| | || |||| ||||| ||| ||||||||||| |||||||||| |||||||    
T  54392920 ataaataaagttaaattgtttttgtatatgctattagctgttttaataagatatcttggagaaattttgaaaataagttgaaaac 54392836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 341
Target Start/End: Original strand, 4576775 - 4576906
Alignment:
Q  210 taaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgt 308  Q
    ||||||||||| || |||||| ||||||| ||||| || |||||||||||||| ||| | || ||||||||||||| |||| ||| | ||| ||| ||||    
T  4576775 taaataaagttaaaatatttttgtacaagttataagctgttttcataagctatattgaataacttatgaaaataagctgaacacaacttataaac-atgt 4576873  T
Q  309 cacaagccaatttcataagttctctcaaacagt 341  Q
    || || | | ||||||||||| |||||||||||    
T  4576874 cataaactattttcataagttgtctcaaacagt 4576906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 225 - 308
Target Start/End: Original strand, 45975675 - 45975759
Alignment:
Q  225 tattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgt 308  Q
    |||||| ||| |||||| || || |||||||||||||| |||||||| ||||||||||||| |||||||||| |||||| |||||    
T  45975675 tatttttgtataagctacaagctgttttcataagctatcttggagaatttatgaaaataagctgaaaacagcttatgaataatgt 45975759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 337
Target Start/End: Complemental strand, 10199507 - 10199381
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagcta-tttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||||||||  || |||||||||| || | |||| |||||||||||||||| ||| ||||  ||||||||||||| |||||||| | ||||||| |||||    
T  10199507 aaataaagtcaaactattttcgtataatcgataagcttttttcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaac-atgtc 10199409  T
Q  310 acaagccaatttcataagttctctcaaa 337  Q
    | |||| | |||||| ||||||| ||||    
T  10199408 ataagctattttcatgagttctcccaaa 10199381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 225 - 338
Target Start/End: Complemental strand, 7137083 - 7136970
Alignment:
Q  225 tattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttca 323  Q
    |||||| ||| || |||||| || |||||||||||||| |||||||| ||||||||||||| |||||| | | ||||||  |||||| |||| | |||||    
T  7137083 tatttttgtataatctataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatgaa-tatgtcataagcgattttca 7136985  T
Q  324 taagttctctcaaac 338  Q
    |||||||| ||||||    
T  7136984 taagttctttcaaac 7136970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 9656621 - 9656713
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaa 302  Q
    |||||||||| |||||||||| || ||||||||| || | ||||||||||||  ||||  ||||||||||||||| | |||||||| ||||||    
T  9656621 aaataaagttaaattattttcatataagctataagctgtgttcataagctatcctggatgaattatgaaaataagctcaaaacagcttatgaa 9656713  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 341
Target Start/End: Original strand, 11941296 - 11941364
Alignment:
Q  273 tatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaacagt 341  Q
    |||||||||||| |||||||||| |||||||||||| | |||| | ||||||||| |||| ||||||||    
T  11941296 tatgaaaataagctgaaaacagcttatgaacaatgttataagctattttcataagctctcccaaacagt 11941364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 310
Target Start/End: Complemental strand, 24915150 - 24915050
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||||||||| |||| |||| ||| | ||||||| || |||||||||||| | |||||||| || |||||||||| |||||| ||| |||||| ||||||    
T  24915150 aaataaagttaaattgtttttgtatatgctataagctgttttcataagctgtcttggagaacttgtgaaaataagttgaaaaaagcttatgaaaaatgtc 24915051  T
Q  310 a 310  Q
    |    
T  24915050 a 24915050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 51695556 - 51695496
Alignment:
Q  249 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgt 308  Q
    |||||||||||||| |||||||| ||||||||||||| |||||| ||| ||||||||||||    
T  51695556 ttttcataagctatcttggagaatttatgaaaataagctgaaaatagcttatgaacaatgt 51695496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 309
Target Start/End: Complemental strand, 27820436 - 27820337
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||||||| | |||| |||  ||| ||||||||  || |||| ||||||||| |||||||| ||||||||||||| |||||| ||| |||||||||||||    
T  27820436 aaataaagctaaattgtttatgtataagctatatgctgtttttataagctatcttggagaatttatgaaaataagctgaaaatagcttatgaacaatgtc 27820337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 340
Target Start/End: Complemental strand, 3887731 - 3887601
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctattt-ggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 309  Q
    |||||||||| ||||| |||| ||| |||||||| ||  ||| | ||||||  | |||||| ||||||||||||| | |||||||| |||||||||||||    
T  3887731 aaataaagttaaattaatttcttacgagctataagctgattttacaagctagctaggagaacttatgaaaataagttaaaaacagcttatgaacaatgtc 3887632  T
Q  310 acaagccaatttcataagttctctcaaacag 340  Q
    | |||    |||||||||||||  |||||||    
T  3887631 ataagatgttttcataagttcttccaaacag 3887601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 341
Target Start/End: Original strand, 7941615 - 7941708
Alignment:
Q  249 ttttcataagctattt-ggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaacagt 341  Q
    |||||||||||||||| |||||| ||||||||||||| |||||| ||| |  ||||||||||| ||||   |||||||| ||||  ||||||||    
T  7941615 ttttcataagctatttcggagaacttatgaaaataagttgaaaatagcttcggaacaatgtcataagctgttttcataaattcttccaaacagt 7941708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 342
Target Start/End: Complemental strand, 39976312 - 39976177
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctattt-ggagaaattatgaaaataaga---tgaaaacagcatatgaacaat 306  Q
    |||||||||| | || |||  ||| |||||||| ||| |||||||||||||||| || ||| |||||||||||| |   |||| | ||| | ||||||||    
T  39976312 aaataaagttgatttgtttctgtataagctatacactattttcataagctattttggggaacttatgaaaataataacctgaataaagcgtgtgaacaat 39976213  T
Q  307 gtcacaagccaatttcataagttctctcaaacagtt 342  Q
    |||| ||   | ||||||||||||||||||||||||    
T  39976212 gtcataaattattttcataagttctctcaaacagtt 39976177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 34290207 - 34290299
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaa 302  Q
    |||||||||| | ||  ||| ||| ||||||||| || |||||||||||||| ||| |||| ||||||||||||| |||||||| | ||||||    
T  34290207 aaataaagttaattttattttgtataagctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatgaa 34290299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 35179125 - 35179200
Alignment:
Q  226 attttcgtacaagctataaacttttttcataagctatt-tggagaaattatgaaaataagatgaaaacagcatatg 300  Q
    ||||||||  ||| ||||| || |||||||||| |||| ||||||| ||||||||||||| |||||||||| ||||    
T  35179125 attttcgtttaagttataagctgttttcataagttattatggagaacttatgaaaataagctgaaaacagcttatg 35179200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 38503511 - 38503464
Alignment:
Q  263 ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtca 310  Q
    |||||||| ||||||||||||| |||||||| | ||||||||||||||    
T  38503511 ttggagaacttatgaaaataagctgaaaacaacttatgaacaatgtca 38503464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 47498876 - 47498809
Alignment:
Q  272 ttatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaaca 339  Q
    ||||||||||||| | |||||| | |||||||||| ||| |||| | |||||||||||||| ||||||    
T  47498876 ttatgaaaataagctaaaaacaacttatgaacaatatcataagctattttcataagttctcccaaaca 47498809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 10744300 - 10744366
Alignment:
Q  239 ctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaaca 304  Q
    |||||| || |||||||||||| | || ||||| |||| ||||||||||||||||||| ||||||||    
T  10744300 ctataagctgttttcataagctgtcttagagaacttataaaaataagatgaaaacagcttatgaaca 10744366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 304
Target Start/End: Complemental strand, 31517839 - 31517745
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaaca 304  Q
    |||||||||| ||||  |||| || ||||||||| || | ||||||| || | |||||||  ||||||||||||| |||||||||| ||||||||    
T  31517839 aaataaagttaaattgatttcatataagctataagctgtcttcataatctgtcttggagagcttatgaaaataagctgaaaacagcttatgaaca 31517745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 31918235 - 31918289
Alignment:
Q  222 aattattttcgtacaagctataaacttttttcataagctatttggagaaattatg 276  Q
    ||||||||||||| |||||||||  ||||||||||||||| || ||||| |||||    
T  31918235 aattattttcgtataagctataagattttttcataagctaatttgagaacttatg 31918289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 49888738 - 49888812
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataag 284  Q
    |||||||||| |||| |||||||| ||||||| |  | |||||||||||||| || ||||| |||||||||||||    
T  49888738 aaataaagtttaattgttttcgtataagctattagttgttttcataagctatcttagagaacttatgaaaataag 49888812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 7218173 - 7218088
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatt-tggagaaattatgaaaataagatgaaaacagc 295  Q
    |||||||||  |||| ||||| || |||||||||  | ||||||||| ||||  ||||||| ||||||||||||| ||||||||||    
T  7218173 aaataaagtcaaattgttttcatataagctataagttgttttcataacctatcctggagaacttatgaaaataagttgaaaacagc 7218088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 14630040 - 14629971
Alignment:
Q  236 aagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaaca 304  Q
    ||||||||| || |||||||||||||| |||||||  ||||| ||||||| |||||||| | ||||||||    
T  14630040 aagctataagctattttcataagctatcttggagactttatggaaataagctgaaaacaacttatgaaca 14629971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 32113657 - 32113714
Alignment:
Q  239 ctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagc 295  Q
    ||||||||| |||||||||| ||| |||||||  ||||||||||||| ||||||||||    
T  32113657 ctataaactgttttcataagttatgttggagattttatgaaaataagctgaaaacagc 32113714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 38882972 - 38882915
Alignment:
Q  249 ttttcataagctatttggagaaattatgaaaataagatgaaaacagcatatgaacaat 306  Q
    |||||||||||| | | ||||| ||||||||||||| |||||||| | ||||||||||    
T  38882972 ttttcataagctctctagagaacttatgaaaataagttgaaaacaccttatgaacaat 38882915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 48830175 - 48830123
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatt 263  Q
    |||||||||  || ||||||| || |||||||||||| |||||||||||||||    
T  48830175 aaataaagtcaaactattttcatataagctataaactgttttcataagctatt 48830123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 292
Target Start/End: Complemental strand, 178424 - 178342
Alignment:
Q  211 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaac 292  Q
    |||||||||| ||||||| ||||| ||||||| | || |||||| |||| || || ||||| ||||||||||||| |||||||    
T  178424 aaataaagttaaattattgtcgtataagctattagctgttttcacaagccatctttgagaacttatgaaaataagctgaaaac 178342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 50852 - 50889
Alignment:
Q  247 ttttttcataagctatttggagaaattatgaaaataag 284  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  50852 ttttttcataagttatttggagaacttatgaaaataag 50889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 21355 - 21311
Alignment:
Q  240 tataaacttttttcataagctat-ttggagaaattatgaaaataa 283  Q
    ||||| || |||||||||||||| |||||||||||||||||||||    
T  21355 tataagctgttttcataagctatattggagaaattatgaaaataa 21311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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