View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2289_low_3 (Length: 440)
Name: NF2289_low_3
Description: NF2289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2289_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Complemental strand, 1630353 - 1629944
Alignment:
| Q |
19 |
acaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1630353 |
acaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattga |
1630254 |
T |
|
| Q |
119 |
ggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1630253 |
ggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttat |
1630154 |
T |
|
| Q |
219 |
agctctgcaacagcaggtgagttatattccatctcctttaatctctttttattttatcatttgaagttctaaatttttataataagataggtttataata |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1630153 |
agctctgcaacagcaggtgagttatattccatctcctttaatctctttttattttatcatttgaagttctaaatttttataataagataggtttataata |
1630054 |
T |
|
| Q |
319 |
tttaaattatacttgaggctttctta----catacaattactttaattttttattttaaataattactcttggatcatttaaatttaggtattgatggac |
414 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1630053 |
tttaaattatacttgaggctttcttacatgcatacaattactttcattttttattttaaataattactcttggatcatttaaatttaggtattgatggac |
1629954 |
T |
|
| Q |
415 |
ttcacttcat |
424 |
Q |
| |
|
|||||||||| |
|
|
| T |
1629953 |
ttcacttcat |
1629944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 1624378 - 1624142
Alignment:
| Q |
19 |
acaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1624378 |
acaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattga |
1624279 |
T |
|
| Q |
119 |
ggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1624278 |
ggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttat |
1624179 |
T |
|
| Q |
219 |
agctctgcaacagcaggtgagttatattccatctcct |
255 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
1624178 |
agctctgcaacagcaggtgaattatatttcatttcct |
1624142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 1607357 - 1607121
Alignment:
| Q |
19 |
acaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattga |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1607357 |
acaagactgtgcaggctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattga |
1607258 |
T |
|
| Q |
119 |
ggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1607257 |
ggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttat |
1607158 |
T |
|
| Q |
219 |
agctctgcaacagcaggtgagttatattccatctcct |
255 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
1607157 |
agctctgcaacagcaggtgaattatatttcatttcct |
1607121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 10819926 - 10820160
Alignment:
| Q |
19 |
acaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
10819926 |
acaagactgtgcaagctgctttaaatgctgctgctaagagaaaatacaagacaaggtatgtgatacatgtgaagaaaggtgtttataaagagaacattga |
10820025 |
T |
|
| Q |
119 |
ggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttat |
218 |
Q |
| |
|
|||||||||||||||||| || |||||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10820026 |
ggttgctgttcataatgataacattatgttggtcggtgatggaatgcaaaataccatcataacaagttctagaagtgttcaaggtggttttaccacttat |
10820125 |
T |
|
| Q |
219 |
agctctgcaacagcaggtgagttatattccatctc |
253 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
10820126 |
agctctgcaacagccggtgagttatattccatctc |
10820160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 264 - 424
Target Start/End: Original strand, 10820598 - 10820754
Alignment:
| Q |
264 |
tttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggctttcttacatacaattactttaattt |
363 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| || | |
|
|
| T |
10820598 |
tttttattttatattttgaagttctaaaattttatactaagataggtttataatatttaaattataattgtggctttcttacctacaattactttcatat |
10820697 |
T |
|
| Q |
364 |
tttattttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10820698 |
----ttttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
10820754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 381 - 424
Target Start/End: Complemental strand, 1606689 - 1606646
Alignment:
| Q |
381 |
ctcttggatcatttaaatttaggtattgatggacttcacttcat |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606689 |
ctcttggatcatttaaatttaggtattgatggacttcacttcat |
1606646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 18785404 - 18785179
Alignment:
| Q |
19 |
acaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattga |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
18785404 |
acaagactgtgcaagctgctctaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgtgaagaaaggtgtttataaagagaacattga |
18785305 |
T |
|
| Q |
119 |
ggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttat |
218 |
Q |
| |
|
|||||| ||||| ||||| || |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18785304 |
ggttgcggttcacaatgataacattatgttggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttat |
18785205 |
T |
|
| Q |
219 |
agctctgcaacagcaggtgagttata |
244 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
18785204 |
agctctgcaacagcaggtgaattata |
18785179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 12803590 - 12803384
Alignment:
| Q |
30 |
caagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttc |
129 |
Q |
| |
|
|||| |||| |||||||||||| | ||||| | ||| ||||| ||||| |||| ||| ||||||||||||||||||||||| |||| ||||| | |
|
|
| T |
12803590 |
caagatgctataaatgctgctgggaggagaaggtttaaaacaagatttgttatacgtgtgaagaaaggtgtttatagagagaatattgtggttg-ggaag |
12803492 |
T |
|
| Q |
130 |
at-aatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaa |
228 |
Q |
| |
|
|| ||||| ||||||||| |||| |||||||| | |||||| | ||||||||| ||||| |||||||| ||||| ||| || ||||||||||| | |
|
|
| T |
12803491 |
atgaatgataatattatgttggtaggtgatggaagtagaaatacagtgataacaagtaatagaaatgttcaagctggttttactacctatagctctgcca |
12803392 |
T |
|
| Q |
229 |
cagcaggt |
236 |
Q |
| |
|
| |||||| |
|
|
| T |
12803391 |
ctgcaggt |
12803384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University