View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2289_low_4 (Length: 424)
Name: NF2289_low_4
Description: NF2289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2289_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 37160111 - 37159857
Alignment:
| Q |
1 |
aatctatctacaagaatattgattattaccatggtggatggagtgtattagattttaatggcgcactttatgacatcacgtgattcatcataaccgtccc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
37160111 |
aatctatctacaagaatattgattattaccatggtggatggagtgtattagattttaatggtgcactttatgacctcacgtgattcatcataaccgtccc |
37160012 |
T |
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| Q |
101 |
atacttgggcctggaaagttgttaaag---------cgtc------ttctttgtcatttggctttgcttgaaaggtaatgtaaaacatatgtccagcagc |
185 |
Q |
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||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37160011 |
atacttgggcctggaaagttgttaaagcagcagggccgtcggaggggtctttgtcttttggctttgcttgaaaggtaatgtaaaacatatgtccagcagc |
37159912 |
T |
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| Q |
186 |
aataccaacatcataggcacacttgacaacttcatgtaactcaaatgttggagcc |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37159911 |
aataccaacatcataggcacacttgacaacttcatgtaactcaaatgttggagcc |
37159857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 37204694 - 37204440
Alignment:
| Q |
1 |
aatctatctacaagaatattgattattaccatggtggatggagtgtattagattttaatggcgcactttatgacatcacgtgattcatcataaccgtccc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
37204694 |
aatctatctacaagaatattgattattaccatggtggatggagtgtattagattttaatggtgcactttatgacctcacgtgattcatcataaccgtccc |
37204595 |
T |
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| Q |
101 |
atacttgggcctggaaagttgttaaag---------cgtc------ttctttgtcatttggctttgcttgaaaggtaatgtaaaacatatgtccagcagc |
185 |
Q |
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||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37204594 |
atacttgggcctggaaagttgttaaagcagcagggccgtcggaggggtctttgtcttttggctttgcttgaaaggtaatgtaaaacatatgtccagcagc |
37204495 |
T |
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| Q |
186 |
aataccaacatcataggcacacttgacaacttcatgtaactcaaatgttggagcc |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37204494 |
aataccaacatcataggcacacttgacaacttcatgtaactcaaatgttggagcc |
37204440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 306 - 409
Target Start/End: Complemental strand, 37159783 - 37159680
Alignment:
| Q |
306 |
ttcattctcttcaacctgattatcannnnnnncactgtaatagtccaatgcaagccgagagaattgttcgagagtagggcggtcttcatcggttatgggg |
405 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37159783 |
ttcattctcttcaacctgattatcatttttttcactgtaatagtccaatgcaagccgagagaattgttcgagagtagggcggtcttcatcggttatgggg |
37159684 |
T |
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| Q |
406 |
aggg |
409 |
Q |
| |
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|||| |
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| T |
37159683 |
aggg |
37159680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 306 - 409
Target Start/End: Complemental strand, 37204366 - 37204263
Alignment:
| Q |
306 |
ttcattctcttcaacctgattatcannnnnnncactgtaatagtccaatgcaagccgagagaattgttcgagagtagggcggtcttcatcggttatgggg |
405 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37204366 |
ttcattctcttcaacctgattatcatttttttcactgtaatagtccaatgcaagccgagagaattgttcgagagtagggcggtcttcatcggttatgggg |
37204267 |
T |
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| Q |
406 |
aggg |
409 |
Q |
| |
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|||| |
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| T |
37204266 |
aggg |
37204263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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