View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2289_low_6 (Length: 246)
Name: NF2289_low_6
Description: NF2289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2289_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 42153304 - 42153544
Alignment:
| Q |
18 |
aagatatggcaatcatttcatatagacgcatggagagtcgcaccatcccaatattacatgaactactataggattaggtggccaaccttttactatataa |
117 |
Q |
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| T |
42153304 |
aagatatggcaatcatttcatatagacgcatggagagtcgcaccatcccaatattacatgaactactataggattaggtggccaaccttttactatataa |
42153403 |
T |
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| Q |
118 |
tccaaacaaaaagaattat------------taattcaaatagttatattatatagtttataaattacatggtttatcaaaaaatgcaaatagcaaaagc |
205 |
Q |
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| T |
42153404 |
ttcaaacaaaaaaaattatttgtacccgtcataattcaaatagttatattatatagtttataaattacatggtttatcaaaaaatacaaatagcaaaagc |
42153503 |
T |
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| Q |
206 |
gcatatttaatcataaagtttgaccaattttgcttcgtatt |
246 |
Q |
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| T |
42153504 |
gcatatttaatcataaagtttgaccaattttacttcgtatt |
42153544 |
T |
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