View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2289_low_7 (Length: 242)

Name: NF2289_low_7
Description: NF2289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2289_low_7
NF2289_low_7
[»] chr4 (28 HSPs)
chr4 (25-207)||(14136574-14136756)
chr4 (7-190)||(22409323-22409507)
chr4 (7-193)||(41068992-41069179)
chr4 (6-160)||(30537918-30538074)
chr4 (4-190)||(32318513-32318699)
chr4 (5-190)||(10109216-10109402)
chr4 (3-76)||(20574846-20574919)
chr4 (6-152)||(4960346-4960494)
chr4 (105-188)||(53039474-53039557)
chr4 (6-76)||(38794108-38794178)
chr4 (87-160)||(24010263-24010336)
chr4 (38-181)||(11873076-11873220)
chr4 (102-189)||(26533180-26533267)
chr4 (90-160)||(18995246-18995315)
chr4 (5-59)||(30255178-30255232)
chr4 (5-50)||(14958328-14958373)
chr4 (106-187)||(32055098-32055179)
chr4 (5-49)||(41460528-41460572)
chr4 (4-79)||(18994581-18994656)
chr4 (87-185)||(4960656-4960752)
chr4 (90-160)||(14958401-14958471)
chr4 (5-42)||(564101-564138)
chr4 (5-42)||(28675675-28675712)
chr4 (5-42)||(50297627-50297664)
chr4 (129-190)||(50533265-50533326)
chr4 (11-76)||(53039377-53039442)
chr4 (104-196)||(38793713-38793805)
chr4 (7-55)||(42898962-42899010)
[»] chr1 (29 HSPs)
chr1 (5-190)||(3491405-3491590)
chr1 (6-147)||(12521327-12521469)
chr1 (5-181)||(21276532-21276709)
chr1 (6-79)||(13351514-13351587)
chr1 (11-161)||(48022739-48022890)
chr1 (5-190)||(52141468-52141654)
chr1 (6-160)||(5198820-5198977)
chr1 (87-187)||(42596900-42597000)
chr1 (5-133)||(47370284-47370409)
chr1 (87-144)||(25409642-25409699)
chr1 (9-190)||(298196-298380)
chr1 (34-190)||(8550315-8550470)
chr1 (106-190)||(27211299-27211383)
chr1 (9-76)||(943198-943265)
chr1 (107-193)||(38788942-38789027)
chr1 (33-79)||(48722697-48722743)
chr1 (5-76)||(15881093-15881164)
chr1 (90-160)||(47588466-47588536)
chr1 (107-160)||(4051693-4051746)
chr1 (11-72)||(38942759-38942820)
chr1 (107-187)||(50746016-50746096)
chr1 (6-49)||(27211442-27211485)
chr1 (90-195)||(13352301-13352407)
chr1 (166-196)||(40613245-40613275)
chr1 (87-161)||(49872191-49872265)
chr1 (1-42)||(32441603-32441644)
chr1 (11-76)||(38788843-38788908)
chr1 (106-162)||(26700906-26700962)
chr1 (26-62)||(50176768-50176804)
[»] chr7 (23 HSPs)
chr7 (32-194)||(40211752-40211914)
chr7 (6-190)||(38073565-38073750)
chr7 (6-187)||(38652630-38652806)
chr7 (5-188)||(21148389-21148572)
chr7 (10-188)||(39854083-39854265)
chr7 (5-188)||(8073526-8073710)
chr7 (11-79)||(45513089-45513157)
chr7 (5-195)||(14761734-14761926)
chr7 (90-197)||(41888871-41888978)
chr7 (87-187)||(6647514-6647614)
chr7 (5-76)||(20884448-20884519)
chr7 (3-51)||(11667119-11667167)
chr7 (87-195)||(37391028-37391136)
chr7 (7-49)||(10679237-10679279)
chr7 (106-167)||(33955910-33955971)
chr7 (6-50)||(31009904-31009948)
chr7 (15-78)||(16099254-16099317)
chr7 (101-160)||(31622753-31622812)
chr7 (93-148)||(36446865-36446920)
chr7 (12-42)||(23363867-23363897)
chr7 (9-69)||(6727203-6727263)
chr7 (16-76)||(19044151-19044211)
chr7 (16-76)||(20710425-20710485)
[»] chr3 (26 HSPs)
chr3 (5-189)||(36923499-36923684)
chr3 (6-160)||(28945848-28946002)
chr3 (5-197)||(37238758-37238951)
chr3 (5-189)||(13863581-13863767)
chr3 (5-129)||(43310509-43310636)
chr3 (7-190)||(972408-972592)
chr3 (5-189)||(12568599-12568785)
chr3 (5-189)||(13545063-13545249)
chr3 (13-160)||(52378599-52378748)
chr3 (7-75)||(52915450-52915518)
chr3 (5-160)||(28963354-28963512)
chr3 (12-181)||(50360648-50360819)
chr3 (101-190)||(43310339-43310428)
chr3 (87-197)||(21290205-21290315)
chr3 (104-160)||(50699808-50699864)
chr3 (6-160)||(21490397-21490552)
chr3 (4-49)||(38773649-38773694)
chr3 (5-49)||(51980684-51980728)
chr3 (107-190)||(7681637-7681720)
chr3 (87-157)||(42709898-42709969)
chr3 (90-196)||(11042713-11042818)
chr3 (1-43)||(37387474-37387516)
chr3 (5-79)||(50524231-50524305)
chr3 (5-38)||(11042882-11042915)
chr3 (1-42)||(24355443-24355484)
chr3 (7-43)||(13638023-13638059)
[»] chr8 (20 HSPs)
chr8 (5-188)||(11257854-11258037)
chr8 (8-193)||(5895992-5896179)
chr8 (5-178)||(6393549-6393723)
chr8 (6-160)||(38869783-38869939)
chr8 (5-189)||(26014837-26015022)
chr8 (5-190)||(30069693-30069880)
chr8 (87-157)||(41128156-41128226)
chr8 (87-161)||(1042781-1042855)
chr8 (6-160)||(8072433-8072587)
chr8 (5-79)||(36660691-36660765)
chr8 (87-183)||(7107506-7107602)
chr8 (101-189)||(37456103-37456191)
chr8 (11-160)||(16037307-16037457)
chr8 (6-76)||(36068416-36068486)
chr8 (7-49)||(2540250-2540292)
chr8 (6-76)||(9402862-9402932)
chr8 (12-79)||(31410980-31411047)
chr8 (87-189)||(40651605-40651708)
chr8 (151-197)||(43352084-43352130)
chr8 (101-190)||(2539832-2539920)
[»] chr6 (9 HSPs)
chr6 (8-181)||(3213641-3213811)
chr6 (30-160)||(32785782-32785913)
chr6 (5-160)||(33972583-33972739)
chr6 (87-187)||(17506419-17506519)
chr6 (5-76)||(12141684-12141755)
chr6 (3-49)||(154326-154372)
chr6 (11-79)||(8853724-8853792)
chr6 (4-49)||(7269667-7269712)
chr6 (8-45)||(11109060-11109097)
[»] scaffold0007 (1 HSPs)
scaffold0007 (4-190)||(260285-260472)
[»] chr5 (15 HSPs)
chr5 (5-144)||(10044141-10044282)
chr5 (34-193)||(21369107-21369269)
chr5 (33-195)||(17566682-17566846)
chr5 (34-130)||(28024138-28024236)
chr5 (7-189)||(42655897-42656080)
chr5 (53-193)||(32317560-32317702)
chr5 (101-160)||(2903377-2903436)
chr5 (6-49)||(25037236-25037279)
chr5 (5-76)||(25837433-25837504)
chr5 (107-190)||(5402789-5402872)
chr5 (87-189)||(10333780-10333882)
chr5 (87-144)||(16285912-16285969)
chr5 (7-47)||(5511-5551)
chr5 (6-42)||(29429740-29429776)
chr5 (87-191)||(32135803-32135907)
[»] chr2 (17 HSPs)
chr2 (5-190)||(32227432-32227620)
chr2 (9-157)||(41766314-41766463)
chr2 (4-196)||(40534211-40534403)
chr2 (9-189)||(14776270-14776451)
chr2 (87-188)||(32656243-32656344)
chr2 (8-79)||(10500417-10500488)
chr2 (101-187)||(33830309-33830395)
chr2 (9-79)||(41465382-41465452)
chr2 (87-160)||(9374055-9374128)
chr2 (87-164)||(30326107-30326184)
chr2 (126-191)||(43305458-43305523)
chr2 (6-196)||(35327744-35327935)
chr2 (104-160)||(45075680-45075736)
chr2 (8-79)||(27414046-27414117)
chr2 (87-160)||(12497298-12497371)
chr2 (5-49)||(11941627-11941671)
chr2 (7-62)||(33830213-33830268)
[»] scaffold0154 (1 HSPs)
scaffold0154 (87-190)||(36407-36510)
[»] scaffold0524 (1 HSPs)
scaffold0524 (1-157)||(1394-1552)
[»] scaffold0129 (1 HSPs)
scaffold0129 (5-160)||(37553-37708)
[»] scaffold1157 (1 HSPs)
scaffold1157 (87-191)||(1940-2044)
[»] scaffold0061 (1 HSPs)
scaffold0061 (9-76)||(9072-9139)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 14136574 - 14136756
Alignment:
Q  25 ccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnntaatattaaatatgttgagcaataaattaatataattt 124  Q
    ||||||| |||||||||||||||||| | ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  14136574 ccttagggcacatgttaaacattaatattattccattattggtaagaatttattgaaaaaaataatattaaatatgttgagcaataaattaatataattt 14136673  T
Q  125 tcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcccatatttttatgttaagc 207  Q
     ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14136674 ccaatacatgatttctattagtagaattcttaacatataccttaagggcacaagttagcatttcccatatttttatgttaagc 14136756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 22409323 - 22409507
Alignment:
Q  7 ggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnnt-aatattaaatatgttgag 105  Q
    |||||||||||||||| ||||||   |||||||||||||||||| ||||||||||| ||||||||||||| ||       | ||||||||| || || ||    
T  22409323 ggtcatgttaacttgtgcccttaatgcacatgttaaacattaatttcattccattaatggtaagaatttaatgaaaaaaattaatattaaacattttaag 22409422  T
Q  106 caataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttccc 190  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||| ||||||| | || |||| |||||||||| ||||||||    
T  22409423 caataaattaacacaatttccaatacatgatttctattagtagaattcttaacatgtgccctaagggcacaagttaacatttccc 22409507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 193
Target Start/End: Original strand, 41068992 - 41069179
Alignment:
Q  7 ggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnnt-aatattaaatatgttgag 105  Q
    ||||||| |||||||||| |||| ||||||| |||||||||||||| |||| |||| |||||| |||||||||       | |||||||||||| || ||    
T  41068992 ggtcatgctaacttgtactcttatgacacattttaaacattaatgttattcaattaatggtaaaaatttattgaaaaaaattaatattaaatattttaag 41069091  T
Q  106 caataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcccata 193  Q
    ||||||||||| | ||||||||| |||| ||||||||||||| |||| || ||||    |||||| ||||| |||| |||||||||||    
T  41069092 caataaattaacacaattttcaaaacataatttctattagtaaaattctttacatgggtcttaagggcacatgttaacatttcccata 41069179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 160
Target Start/End: Original strand, 30537918 - 30538074
Alignment:
Q  6 gggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg--nnnnnnntaatattaaatatgttg 103  Q
    ||||||||||||||||| |||||||| |||||||||||||||| | |||||||| || ||||||||||||| ||          ||||||||| || |||    
T  30537918 gggtcatgttaacttgttcccttagggcacatgttaaacattagtttcattccaataatggtaagaatttaatggaaaaaaatgaatattaaacattttg 30538017  T
Q  104 agcaataaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
    ||||||||||||| | |||||||||||||| |||||||||| | ||||| |||||||    
T  30538018 agcaataaattaacacaattttcaatacataatttctattaatggaattcttaacat 30538074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 32318699 - 32318513
Alignment:
Q  4 tagggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg-nnnnnnntaatattaaatatgtt 102  Q
    |||| ||| |||||||||| |||||||| |||||||||| ||||||||||||| ||||| || ||| |||||||||        |||||||||| || ||    
T  32318699 taggatcacgttaacttgtgcccttagggcacatgttaagcattaatgtcatttcattagtgttaataatttattgaaaaaaattaatattaaacatttt 32318600  T
Q  103 gagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttccc 190  Q
    || ||||||||||| | |||||||||||||| |||||||||| |  |||| ||||||| |  | |||| |||||||||| ||||||||    
T  32318599 gaacaataaattaacacaattttcaatacataatttctattaatgaaattcttaacatgtggc-taagggcacaagttaacatttccc 32318513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 10109402 - 10109216
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnnt-aatattaaatatgttg 103  Q
    ||||||||||||||||||  | ||||| |||||||||||||||| | ||||| || || |||||| |||||  ||       | ||||||||| || |||    
T  10109402 agggtcatgttaacttgtgtctttagggcacatgttaaacattattttcatttcaataatggtaaaaatttgatgaaaaaagttaatattaaacattttg 10109303  T
Q  104 agcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttccc 190  Q
    ||||||||||||| | |||||||||||||| |||||||||||| ||||| |||| || | || ||||  ||||||||| ||||||||    
T  10109302 agcaataaattaacacaattttcaatacataatttctattagtggaattcttaatatgtgccctaaggacacaagttaacatttccc 10109216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 20574846 - 20574919
Alignment:
Q  3 ttagggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattta 76  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||  | |||||||||||    
T  20574846 ttagggtcatgttaacttgtgcccttagggcacatgttaaacattaatttcattccattgatagtaagaattta 20574919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 152
Target Start/End: Original strand, 4960346 - 4960494
Alignment:
Q  6 gggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg--nnnnnnntaatattaaatatgttg 103  Q
    ||||||| ||||||| | ||||||||||||||||||| ||||||| ||||||||||| |||||| || ||||||          ||||||||| |  |||    
T  4960346 gggtcatattaacttatgcccttaggacacatgttaagcattaatttcattccattaatggtaaaaaattattgaaaaaaaatgaatattaaacaatttg 4960445  T
Q  104 agcaataaattaatataattttcaatacatgatttctattagtagaatt 152  Q
    ||||||||||||| | |||||||||||| | |||||||||||| |||||    
T  4960446 agcaataaattaacacaattttcaatacgtaatttctattagtggaatt 4960494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 53039474 - 53039557
Alignment:
Q  105 gcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttc 188  Q
    |||||||||||| | |||| ||||||||| ||||||||||||  |||| ||||||| |||||||||||||||||||| ||||||    
T  53039474 gcaataaattaacacaattatcaatacataatttctattagtgaaattcttaacatgtaccttaagagcacaagttaacatttc 53039557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 38794178 - 38794108
Alignment:
Q  6 gggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattta 76  Q
    ||||||||||||||||| |||||||| | |||||||| ||||||| ||||||||||| | |||||||||||    
T  38794178 gggtcatgttaacttgtgcccttagggcccatgttaagcattaatttcattccattaatagtaagaattta 38794108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 24010263 - 24010336
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
    |||||||||| || |||  ||||||||||| | |||||||||||||| |||||||||||| ||||| |||||||    
T  24010263 taatattaaacattttggacaataaattaacacaattttcaatacataatttctattagtggaattcttaacat 24010336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 181
Target Start/End: Complemental strand, 11873220 - 11873076
Alignment:
Q  38 gttaaacattaatgtcattccattattggtaagaatttattgnnnnnnnt-aatattaaatatgttgagcaataaattaatataattttcaatacatgat 136  Q
    ||||||||||||||||||||||| | || ||||||||||||        | ||||| |||||| |||| ||||||||||| | |||||  |||| || ||    
T  11873220 gttaaacattaatgtcattccatcaatgataagaatttattaaaaaaaattaatatcaaatattttgaacaataaattaacacaatttctaatatataat 11873121  T
Q  137 ttctattagtagaatttttaacatataccttaagagcacaagtta 181  Q
     ||||| ||| ||||||||||||| |  |||||| ||||||||||    
T  11873120 ctctatcagtggaatttttaacatgtgtcttaagggcacaagtta 11873076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 26533180 - 26533267
Alignment:
Q  102 tgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcc 189  Q
    ||||| ||||||||| | ||||| | |||||| |||||||||||| ||||| ||||||| | || |||| |||||||||| |||||||    
T  26533180 tgagcgataaattaacacaatttccgatacataatttctattagtggaattcttaacatgtgccataagggcacaagttaacatttcc 26533267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 18995246 - 18995315
Alignment:
Q  90 tattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
    ||||||| || ||||||||||| |||| | ||||||| |||||| |||||||||||||||||| |||||||    
T  18995246 tattaaacattttgagcaataa-ttaacacaattttcgatacataatttctattagtagaattcttaacat 18995315  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 30255178 - 30255232
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattcca 59  Q
    ||||| |||||||||||| |||||||| ||||| |||||||||||| ||||||||    
T  30255178 agggtaatgttaacttgtgcccttagggcacattttaaacattaatttcattcca 30255232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 14958328 - 14958373
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaat 50  Q
    |||||| ||||||||||| |||||||||||||||||| ||||||||    
T  14958328 agggtcttgttaacttgtgcccttaggacacatgttagacattaat 14958373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 187
Target Start/End: Original strand, 32055098 - 32055179
Alignment:
Q  106 caataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcattt 187  Q
    ||||||||||| | ||||||| |||||| |||||||||| | |||| |||||||| | | ||||| |||||||||| |||||    
T  32055098 caataaattaacacaattttcgatacataatttctattaatggaatctttaacatgtgctttaagggcacaagttaacattt 32055179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 41460528 - 41460572
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaa 49  Q
    |||||||||||||||||| |||||||  |||||||||||||||||    
T  41460528 agggtcatgttaacttgtgcccttagagcacatgttaaacattaa 41460572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 18994581 - 18994656
Alignment:
Q  4 tagggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg 79  Q
    |||||||||| ||||||||  | ||| ||||||||||||  |||||||||||| || |  ||||||||||||||||    
T  18994581 tagggtcatgctaacttgtgtctttatgacacatgttaagtattaatgtcatttcactgatggtaagaatttattg 18994656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 185
Target Start/End: Complemental strand, 4960752 - 4960656
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcat 185  Q
    ||||||| ||||| |||||||||||||||| | |||||| ||||| | |||||||||| | ||||||||| ||| | || |||| | ||||||||||||    
T  4960752 taatattcaatat-ttgagcaataaattaacagaattttaaatac-taatttctattaatcgaatttttatcatgtgccctaagtgtacaagttagcat 4960656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 14958401 - 14958471
Alignment:
Q  90 tattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
    ||||||| | |||||| |||||||| | | |||||||||||||||||| ||||||||  |||| |||||||    
T  14958401 tattaaacaagttgagtaataaattcacacaattttcaatacatgattactattagtgaaattcttaacat 14958471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 564101 - 564138
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaa 42  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  564101 agggttatgttaacttgtacccttagggcacatgttaa 564138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 28675675 - 28675712
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaa 42  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  28675675 agggtcatgttaacttgtgcccttagggcacatgttaa 28675712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 50297627 - 50297664
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaa 42  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  50297627 agggtcatgttaacttgtgcccttagggcacatgttaa 50297664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 50533326 - 50533265
Alignment:
Q  129 tacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttccc 190  Q
    |||||||||||||||| ||||||| ||||||| |||| |||| | ||||||||  |||||||    
T  50533326 tacatgatttctattaatagaattcttaacatgtaccctaagggaacaagttaatatttccc 50533265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 53039377 - 53039442
Alignment:
Q  11 atgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattta 76  Q
    ||||||||||||  ||||||| || ||||||| ||||||| ||||| ||||| |||||| ||||||    
T  53039377 atgttaacttgtgtccttagggcatatgttaagcattaatttcatttcattaatggtaaaaattta 53039442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 38793805 - 38793713
Alignment:
Q  104 agcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcccatattt 196  Q
    ||||||||||||| | ||||| |||||||  ||| |||||||| ||||| |||||||    | |||| |||||||||| |||||| |||||||    
T  38793805 agcaataaattaacacaatttacaatacacaattactattagtggaattcttaacatgagtcctaagggcacaagttaacatttctcatattt 38793713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 42898962 - 42899010
Alignment:
Q  7 ggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcat 55  Q
    |||||| |||||||||  ||||||| |||||||||||||||||| ||||    
T  42898962 ggtcatcttaacttgtgtccttagggcacatgttaaacattaatttcat 42899010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 3491405 - 3491590
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnntaatattaaatatgttga 104  Q
    |||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| ||||||||||||| ||       |||||||||| || ||||    
T  3491405 agggtcatgttaacttgtgcccttagggcacatgttaaacattaatttcattccattaatggtaagaatttaatgaaaaaattaatattaaaaattttga 3491504  T
Q  105 gcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttccc 190  Q
    |||||||||||  | ||||| |||||||| |||||||||||| ||||| ||||||| | || |||| |||||||||| ||||||||    
T  3491505 gcaataaattatcacaatttccaatacataatttctattagtggaattcttaacatttgccctaagggcacaagttaacatttccc 3491590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 12521469 - 12521327
Alignment:
Q  6 gggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattt-attgnnnnnnntaatattaaatatgttga 104  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||| |||||| |||| |||||||||||| |||        |||||||||| || ||||    
T  12521469 gggtcgtgttaacttgtgccctaaggacacatgttaaacattaatttcattctattaatggtaagaatttaattaaaaaaattaatattaaacattttga 12521370  T
Q  105 gcaataaattaatataattttcaatacatgatttctattagta 147  Q
    |||||||||||| |||||||| ||||||| |||||||||||||    
T  12521369 gcaataaattaacataatttttaatacataatttctattagta 12521327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 21276532 - 21276709
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg-nnnnnnntaatattaaatatgttg 103  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||| |||||| |||| ||||||||||||| ||        |||||||||| || |||    
T  21276532 agggtcatgttaacttgtgcccttaggacacatgttaagcattaatttcattctattaatggtaagaatttaatgaaaaaaattaatattaaacatcttg 21276631  T
Q  104 agcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagtta 181  Q
     |  ||||||||| | |||||||||||||| |||||||||||| ||||| ||| ||| | || ||||  |||||||||    
T  21276632 cgtgataaattaacacaattttcaatacataatttctattagtggaattcttatcatgtgccctaaggacacaagtta 21276709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 13351514 - 13351587
Alignment:
Q  6 gggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg 79  Q
    |||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||| ||||||||||||||||    
T  13351514 gggtcatgttaatttgtaccattaggccgcatgttaaacattaatgtcattccattaatggtaagaatttattg 13351587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 48022890 - 48022739
Alignment:
Q  11 atgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg-nnnnnnntaatattaaatatgttgagcaat 109  Q
    |||||||||||| |||||||| |||||||||||||||||| ||||||||||| ||||||||||||| ||        ||||| |||| || || ||||||    
T  48022890 atgttaacttgtgcccttagggcacatgttaaacattaatttcattccattaatggtaagaatttaatgaaaaaaattaatactaaacatttttagcaat 48022791  T
Q  110 aaattaatataattttcaatacatgatttctattagtagaatttttaacata 161  Q
    || |||| | ||||| |||||||| ||||||||||   ||||| ||||||||    
T  48022790 aatttaacacaatttccaatacataatttctattacaggaattcttaacata 48022739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 52141468 - 52141654
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg--nnnnnnntaatattaaatatgtt 102  Q
    |||||||||||||||||| |||||||| || ||||||| ||||||| |||||||| || ||||||| ||||| ||         |||||||||| || ||    
T  52141468 agggtcatgttaacttgtgcccttagggcatatgttaagcattaatttcattccactaatggtaagtatttaatgaaaaaaaattaatattaaacatttt 52141567  T
Q  103 gagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttccc 190  Q
    || ||||||||||| ||||||| |||| ||| ||||  |||| | ||||| ||| ||| | |||||||| ||||||||| ||||||||    
T  52141568 gaacaataaattaacataatttccaatgcataattttcattattggaattcttatcatgtgccttaaga-cacaagttaacatttccc 52141654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 160
Target Start/End: Complemental strand, 5198977 - 5198820
Alignment:
Q  6 gggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg---nnnnnnntaatattaaatatgtt 102  Q
    ||||||| ||||||||| | |||||| |||||||||||||||||| ||||| ||| | ||||||||||||| ||           ||||||||| || ||    
T  5198977 gggtcatattaacttgtgctcttagggcacatgttaaacattaatttcatttcataaatggtaagaatttaatgaaaaaaaaataaatattaaacatttt 5198878  T
Q  103 gagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
    ||  |||||||||| | ||||| |||||||| |||||||||||||||||| |||||||    
T  5198877 gaataataaattaacacaatttccaatacataatttctattagtagaattcttaacat 5198820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 42597000 - 42596900
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatt 186  Q
    |||||||||| || || ||||||||||||| | ||| ||||||| ||||||||||||||| ||||| ||||||| |||| | || |||||||||| ||||    
T  42597000 taatattaaacattttaagcaataaattaacacaatattcaatatatgatttctattagtggaattcttaacatgtaccatgagggcacaagttaacatt 42596901  T
Q  187 t 187  Q
    |    
T  42596900 t 42596900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 47370284 - 47370409
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnntaatattaaatatgttga 104  Q
    ||||||||||||||||||    ||| | |||||||||| ||||||||||||| ||||| ||||||||||||||||       |||||||||| || ||||    
T  47370284 agggtcatgttaacttgtgtaattatggcacatgttaagcattaatgtcatttcattaatggtaagaatttattg---aaattaatattaaacattttga 47370380  T
Q  105 gcaataaattaatataattttcaatacat 133  Q
    ||||||||| || | ||||| ||||||||    
T  47370381 gcaataaatcaacacaatttccaatacat 47370409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 25409642 - 25409699
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctatta 144  Q
    ||||||||||||| |||||||||||||||| | |||||||||||||| ||||||||||    
T  25409642 taatattaaatatcttgagcaataaattaacacaattttcaatacataatttctatta 25409699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 298380 - 298196
Alignment:
Q  9 tcatgttaacttgtacccttaggaca-catgttaaacattaatgtcattccattattggtaagaatttattg--nnnnnnntaatattaaatatgttgag 105  Q
    |||||||||||||| |||||| | || |||||||| ||||||| ||||||||||| | ||||||||||| ||         || ||||||| |  |||||    
T  298380 tcatgttaacttgtgcccttaaggcaacatgttaagcattaatttcattccattaatagtaagaatttaatgaaaaaaaattagtattaaacaacttgag 298281  T
Q  106 caataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttccc 190  Q
     |||||||||| | ||||| |||||||  ||| |||||||| ||||| ||||||| | || |||| |||||||||| ||||||||    
T  298280 taataaattaacacaatttccaatacacaattactattagtggaattcttaacatgtgccctaagggcacaagttaacatttccc 298196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 8550315 - 8550470
Alignment:
Q  34 acatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnntaatattaaa-tatgttgagcaataaattaatataattttcaataca 132  Q
    ||||||||||||||||| |||||  |||| |||||| |||||||||        ||||||||| ||| || ||||||||||||| | ||||| |||||||    
T  8550315 acatgttaaacattaatttcattt-attaatggtaaaaatttattgaaaaaatgaatattaaactat-ttaagcaataaattaacacaatttccaataca 8550412  T
Q  133 tgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttccc 190  Q
    | |||||||||||| ||||| |||||||||  | || | |||||||||| ||||||||    
T  8550413 taatttctattagtggaattcttaacatatgtcatacgggcacaagttaacatttccc 8550470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 27211383 - 27211299
Alignment:
Q  106 caataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttccc 190  Q
    ||||||||||| ||||||||| |||||| |||||||||||| |||| || ||||| ||||||||| ||| ||||||  |||||||    
T  27211383 caataaattaacataattttcgatacataatttctattagtggaatcttgaacatgtaccttaagggcataagttaatatttccc 27211299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 943265 - 943198
Alignment:
Q  9 tcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattta 76  Q
    |||||||||||||| |||| |||  ||||||||||||||||| ||||||||||| | |||||||||||    
T  943265 tcatgttaacttgtgccctcagggtacatgttaaacattaatttcattccattaatagtaagaattta 943198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 38788942 - 38789027
Alignment:
Q  107 aataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcccata 193  Q
    |||||||||| | ||||| |||||||| ||| ||||||||| |||| |||||||||| |||||| |||||||||| ||||| |||||    
T  38788942 aataaattaacacaatttccaatacataattactattagtaaaattcttaacatata-cttaagggcacaagttaacattttccata 38789027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 48722697 - 48722743
Alignment:
Q  33 cacatgttaaacattaatgtcattccattattggtaagaatttattg 79  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||    
T  48722697 cacatgttaaacattaatttcattccattaatggtaagaatttattg 48722743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 15881093 - 15881164
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattta 76  Q
    ||||||| ||||||||||||| | |||  |||| |||| ||||||| ||||||||||| |||||||||||||    
T  15881093 agggtcacgttaacttgtaccttaagggtacatattaagcattaatttcattccattaatggtaagaattta 15881164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 47588466 - 47588536
Alignment:
Q  90 tattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
    ||||||| || ||||  |||||||||| | ||||||||||||||  ||||||||||||||||| |||||||    
T  47588466 tattaaacattttgaataataaattaacacaattttcaatacatagtttctattagtagaattcttaacat 47588536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 4051693 - 4051746
Alignment:
Q  107 aataaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
    |||||||||| | ||||||||||| || |||||||||||||||||| |||||||    
T  4051693 aataaattaacacaattttcaatatataatttctattagtagaattcttaacat 4051746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 38942820 - 38942759
Alignment:
Q  11 atgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaa 72  Q
    |||||||||||   ||||| |||||||||||| ||||||||||||||||||| | |||||||    
T  38942820 atgttaacttgcgtccttaagacacatgttaagcattaatgtcattccattaatagtaagaa 38942759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 50746096 - 50746016
Alignment:
Q  107 aataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcattt 187  Q
    |||||||||||||||||||| |||||  |||| ||||||| ||||  ||||||| | |||||||  ||||||||| |||||    
T  50746096 aataaattaatataattttcgatacaatatttatattagtggaatccttaacatgtgccttaaggacacaagttaacattt 50746016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 27211485 - 27211442
Alignment:
Q  6 gggtcatgttaacttgtacccttaggacacatgttaaacattaa 49  Q
    ||||||||||||||||| |||||||| |||||||||| ||||||    
T  27211485 gggtcatgttaacttgtgcccttagggcacatgttaagcattaa 27211442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 13352301 - 13352407
Alignment:
Q  90 tattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagt-agaatttttaacatataccttaagagcacaagttagcatttc 188  Q
    ||||||| || |||| ||||||||||| | |||||||||| ||| |||| ||||| |  ||| |||||| || | || |||| |||||||||| ||||||    
T  13352301 tattaaacattttgaacaataaattaacacaattttcaatgcataatttttattaatgggaaattttaaaatgtgccctaagggcacaagttaacatttc 13352400  T
Q  189 ccatatt 195  Q
    |||||||    
T  13352401 ccatatt 13352407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 196
Target Start/End: Complemental strand, 40613275 - 40613245
Alignment:
Q  166 ttaagagcacaagttagcatttcccatattt 196  Q
    |||||||||||||||||||||||||||||||    
T  40613275 ttaagagcacaagttagcatttcccatattt 40613245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 49872265 - 49872191
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacata 161  Q
    ||||||||||| | |||||||||||||||| | ||||||| |||||  |||| ||||||| ||||  ||||||||    
T  49872265 taatattaaattttttgagcaataaattaacacaattttcgatacaacatttttattagtggaatccttaacata 49872191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32441603 - 32441644
Alignment:
Q  1 ttttagggtcatgttaacttgtacccttaggacacatgttaa 42  Q
    |||||||||| ||||||||||| |||||||| ||||||||||    
T  32441603 ttttagggtcttgttaacttgtgcccttagggcacatgttaa 32441644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 38788843 - 38788908
Alignment:
Q  11 atgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattta 76  Q
    ||||||||||||  | ||| | |||||||||||||||||| |||||| |||| | |||||||||||    
T  38788843 atgttaacttgtgtcattatggcacatgttaaacattaatttcattctattaatagtaagaattta 38788908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 26700962 - 26700906
Alignment:
Q  106 caataaattaatataattttcaatacatgatttctattagtagaatttttaacatat 162  Q
    ||||||||||| | |||||||||||||| |||| ||| | || ||||||||||||||    
T  26700962 caataaattaacacaattttcaatacataatttttatcaatataatttttaacatat 26700906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 50176768 - 50176804
Alignment:
Q  26 cttaggacacatgttaaacattaatgtcattccatta 62  Q
    |||| |||||||||||||||||||||| |||||||||    
T  50176768 cttatgacacatgttaaacattaatgttattccatta 50176804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 194
Target Start/End: Original strand, 40211752 - 40211914
Alignment:
Q  32 acacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnntaatattaaatatgttgagcaataaattaatataattttcaatac 131  Q
    ||||||||||| ||||||||| ||||||||| | ||||||||||||||       ||||||||||||| |||||||||||||||| | ||||| ||||||    
T  40211752 acacatgttaagcattaatgttattccattaatagtaagaatttattgaaaaaattaatattaaatattttgagcaataaattaagacaatttccaatac 40211851  T
Q  132 atgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcccatat 194  Q
    ||||||| || |||||||||||||||||||| |  ||||   |||||||| ||||||||||||    
T  40211852 atgatttataatagtagaatttttaacatatgctctaaggatacaagttaacatttcccatat 40211914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 190
Target Start/End: Original strand, 38073565 - 38073750
Alignment:
Q  6 gggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg-nnnnnnntaatattaaatatgttga 104  Q
    ||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| ||||||||||||| ||        ||||| ||||||| ||||    
T  38073565 gggtcatgttaacttgtgcccttagggcacatgttaaacattaatttcattccattaatggtaagaatttaatgaaataaattaatactaaatattttga 38073664  T
Q  105 gcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttccc 190  Q
    |||||||||||| | |||||  ||||||| |||||||||||   |||  ||||||| | || |||| |||||||||| ||||||||    
T  38073665 gcaataaattaacacaatttctaatacataatttctattagagaaatgcttaacatgtgccctaagggcacaagttaacatttccc 38073750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 187
Target Start/End: Original strand, 38652630 - 38652806
Alignment:
Q  6 gggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnntaatattaaatatgttgag 105  Q
    ||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||        || | | ||||| ||||     
T  38652630 gggtcatgttaacttgtgcccttagggtacatgttaaacattaatgtcattccattagtggtaagaatttattgaaa-----aaaaattaatattttgaa 38652724  T
Q  106 caataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcattt 187  Q
    ||||||||||| | | ||| |||||||| |||||||||||| ||||| ||||||| | || ||| ||||||||||| |||||    
T  38652725 caataaattaacacactttccaatacataatttctattagtggaattcttaacatgtgccctaaaagcacaagttaacattt 38652806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 188
Target Start/End: Complemental strand, 21148572 - 21148389
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnntaatattaaatatgttga 104  Q
    ||||||||||||| |||| |||| ||| |||||||||||||||||  | |||  |||| ||||||||||||| ||       |||||||||| || ||||    
T  21148572 agggtcatgttaatttgtgccctaagggcacatgttaaacattaactttattttattaatggtaagaatttaatgaaaaaattaatattaaacattttga 21148473  T
Q  105 gcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttc 188  Q
    | |||||||||||| |||||||||||||| |||| ||||||| ||||| ||||||| |  ||||| ||||||| ||| ||||||    
T  21148472 gtaataaattaatacaattttcaatacataatttttattagtggaattcttaacatgtgtcttaaaagcacaacttaacatttc 21148389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 39854083 - 39854265
Alignment:
Q  10 catgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattta-ttgnnnnnnn----taatattaaatatgttga 104  Q
    ||||||||||||| |||||||| || ||||||| ||||||| ||||||||||| |||||| |||||| |||           ||||||||||||| ||||    
T  39854083 catgttaacttgtgcccttagggcatatgttaagcattaatttcattccattaatggtaaaaatttaattgaaaaaaaaaattaatattaaatattttga 39854182  T
Q  105 gcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttc 188  Q
     ||||||||||| | |||||||||||||| |||| ||||||||||||| ||||||| | || |||| |||||||||| ||||||    
T  39854183 acaataaattaacacaattttcaatacataatttatattagtagaattcttaacatgtgccctaag-gcacaagttaacatttc 39854265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 188
Target Start/End: Original strand, 8073526 - 8073710
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttatt-gnnnnnnntaatattaaatatgttg 103  Q
    ||||||||| |||||||| || || || |||||||||| |||||||||||||||| || |||||||||||||||         |||||||||| || |||    
T  8073526 agggtcatgctaacttgtgcctttggggcacatgttaagcattaatgtcattccactaatggtaagaatttattaaaaaaaattaatattaaacattttg 8073625  T
Q  104 agcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttc 188  Q
    ||| | ||||||| | || |||  | | || ||||||||||||  |||| ||||||| |||| ||||| ||||||||||||||||    
T  8073626 agccaaaaattaacacaaatttttacatataatttctattagtgaaattcttaacatgtaccctaagaacacaagttagcatttc 8073710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 45513089 - 45513157
Alignment:
Q  11 atgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg 79  Q
    |||||||||||| |||||| |||||||||||| || |||| ||||||||||| ||||||||||||||||    
T  45513089 atgttaacttgtgcccttaagacacatgttaagcactaatttcattccattaatggtaagaatttattg 45513157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 195
Target Start/End: Original strand, 14761734 - 14761926
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattta-ttgnnnnnnnt-aatattaaatatgtt 102  Q
    |||||||||||| |||||  ||| | ||||||||||||| |||||| |||||| |||| || |||||||||| |||       | ||||||||| |||||    
T  14761734 agggtcatgttagcttgtgtcctaaagacacatgttaaatattaatttcattctattaatgataagaatttaattgaaaaaaattaatattaaacatgtt 14761833  T
Q  103 gagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcccatatt 195  Q
    || |||||||| || | || ||||||||||  |||||||||||||||||| |||| || | |  |||  |||||||||| |||||||| ||||    
T  14761834 gaacaataaataaacacaaatttcaatacaaaatttctattagtagaattcttaatatgtgcactaatggcacaagttatcatttcccttatt 14761926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 41888871 - 41888978
Alignment:
Q  90 tattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcc 189  Q
    ||||||| || |||| ||||||||||| | |||||||||| |||||||||||||| | ||||| ||| ||| | || |||| |||||||||| |||||||    
T  41888871 tattaaacattttgaacaataaattaacacaattttcaatgcatgatttctattattggaattcttatcatgtgccctaagggcacaagttaacatttcc 41888970  T
Q  190 catatttt 197  Q
    | ||||||    
T  41888971 cttatttt 41888978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 6647614 - 6647514
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatt 186  Q
    ||||||||||||| |||| ||||||||||| | ||||||| |||||| |||| |||||||  |||| ||||||||| || ||||  ||||||||| ||||    
T  6647614 taatattaaatattttgaacaataaattaacacaattttctatacataatttttattagtgaaattcttaacatatgccataaggacacaagttaacatt 6647515  T
Q  187 t 187  Q
    |    
T  6647514 t 6647514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 20884448 - 20884519
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattta 76  Q
    |||||||||||||||||| ||||||||  ||||||||| ||||||| ||||| ||||| | |||||||||||    
T  20884448 agggtcatgttaacttgtgcccttagggtacatgttaagcattaatttcatttcattaatagtaagaattta 20884519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 11667167 - 11667119
Alignment:
Q  3 ttagggtcatgttaacttgtacccttaggacacatgttaaacattaatg 51  Q
    |||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  11667167 ttagggtcatgttaacttgtgcccttagggcacatgttaagcattaatg 11667119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 37391136 - 37391028
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatt 186  Q
    |||||||||| || |||||||||||||||| | |||||  |||| || ||  |||||| ||||||| ||||||| | ||||||| |||||||||| | ||    
T  37391136 taatattaaacattttgagcaataaattaacacaatttctaataaataataactattaatagaattcttaacatgtgccttaagggcacaagttaacttt 37391037  T
Q  187 tcccatatt 195  Q
    |||| ||||    
T  37391036 tcccttatt 37391028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 10679279 - 10679237
Alignment:
Q  7 ggtcatgttaacttgtacccttaggacacatgttaaacattaa 49  Q
    |||||||||||||||| |||||||| |||||||||||||||||    
T  10679279 ggtcatgttaacttgtgcccttagggcacatgttaaacattaa 10679237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 33955971 - 33955910
Alignment:
Q  106 caataaattaatataattttcaatacatgatttctattagtagaatttttaacatatacctt 167  Q
    ||||||||||| | ||||||||||| || |||| ||||||||||||| ||||||| ||||||    
T  33955971 caataaattaacacaattttcaatatataatttttattagtagaattcttaacatgtacctt 33955910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 31009948 - 31009904
Alignment:
Q  6 gggtcatgttaacttgtacccttaggacacatgttaaacattaat 50  Q
    ||||||||||||||||| ||| || ||||||||||||||||||||    
T  31009948 gggtcatgttaacttgtgcccgtaagacacatgttaaacattaat 31009904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 16099254 - 16099317
Alignment:
Q  15 taacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttatt 78  Q
    |||||||| | |||||  ||||||||||  |||||||||||| |||||||| ||||||||||||    
T  16099254 taacttgtgctcttagagcacatgttaagtattaatgtcatttcattattgataagaatttatt 16099317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 31622753 - 31622812
Alignment:
Q  101 ttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
    |||| ||||||||||| | ||||||| |||||| ||||||||||||| | ||||||||||    
T  31622753 ttgaacaataaattaacacaattttcgatacataatttctattagtaaattttttaacat 31622812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 36446865 - 36446920
Alignment:
Q  93 taaatatgttgagcaataaattaatataattttcaatacatgatttctattagtag 148  Q
    ||||||| |||||||||||||||| | || ||||||||||| |||| |||||||||    
T  36446865 taaatattttgagcaataaattaaaacaaatttcaatacataatttttattagtag 36446920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 23363897 - 23363867
Alignment:
Q  12 tgttaacttgtacccttaggacacatgttaa 42  Q
    |||||||||||||||||||||||||||||||    
T  23363897 tgttaacttgtacccttaggacacatgttaa 23363867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 6727263 - 6727203
Alignment:
Q  9 tcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaa 69  Q
    ||||||||||||||  ||||| | || ||||||||||||||| ||||| ||||| ||||||    
T  6727263 tcatgttaacttgtgtccttatggcatatgttaaacattaatttcatttcattaatggtaa 6727203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 19044211 - 19044151
Alignment:
Q  16 aacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattta 76  Q
    |||||||||||  | ||||||| |||||||||||| |||||  |||| |||||||||||||    
T  19044211 aacttgtacccgaatgacacatattaaacattaatatcattgaattaatggtaagaattta 19044151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 20710425 - 20710485
Alignment:
Q  16 aacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattta 76  Q
    |||||||||||  | ||||||| |||||||||||| |||||  |||| |||||||||||||    
T  20710425 aacttgtacccgaatgacacatattaaacattaatatcattgaattaatggtaagaattta 20710485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 36923499 - 36923684
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttatt-gnnnnnnntaatattaaatatgttg 103  Q
    |||||||||||||||| | ||||||| ||||||||||||||||||||||||| ||||| |  |||||||||||| |       |||||||||| || |||    
T  36923499 agggtcatgttaacttatgcccttagtacacatgttaaacattaatgtcatttcattactactaagaatttattggaaaaaattaatattaaacattttg 36923598  T
Q  104 agcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcc 189  Q
    ||||||||||||| | ||||| |||||||| |||||||||||| ||||| |||| || | || ||||||||||| ||| |||||||    
T  36923599 agcaataaattaacacaatttccaatacataatttctattagtggaattcttaatatgtgccctaagagcacaaattaacatttcc 36923684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 160
Target Start/End: Complemental strand, 28946002 - 28945848
Alignment:
Q  6 gggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnntaatattaaatatgttgag 105  Q
    ||||||||||||||||| |||||| | || ||||||||||||||| ||||||||||| |||||| |||||| ||       |||||||||| || || ||    
T  28946002 gggtcatgttaacttgtgcccttaaggcatatgttaaacattaatttcattccattaatggtaaaaatttaatgaaaaaattaatattaaacattttaag 28945903  T
Q  106 caataaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
    ||||||||||| | ||||| ||||||||||||| ||||||| ||||| |||||||    
T  28945902 caataaattaacacaatttccaatacatgatttttattagtggaattcttaacat 28945848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 197
Target Start/End: Original strand, 37238758 - 37238951
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnnt-aatattaaatatgttg 103  Q
    |||||||||||||||||| |||||||| |||||||||| ||||||| ||||||||||| |||||| |||||| ||       | ||||||||| || ||     
T  37238758 agggtcatgttaacttgtgcccttagggcacatgttaagcattaatttcattccattaatggtaataatttaatgaaaaatatcaatattaaacatttta 37238857  T
Q  104 agcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcccatatttt 197  Q
    | ||||||||||| | ||||| ||| | || |||||||||| | ||||| ||||||| | || | || |||||||||| |||||||||||||||    
T  37238858 aacaataaattaacacaatttccaaaaaataatttctattaatggaattcttaacatgtgcccttagggcacaagttaacatttcccatatttt 37238951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 13863581 - 13863767
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg---nnnnnnntaatattaaatatgt 101  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||| ||||| ||||| | ||||||||||| ||          || ||||||| |  |    
T  13863581 agggtcatgttaacttgtgcccttaggacacatgttaagcattaatttcatttcattaatagtaagaatttaatggaaaaaaaattagtattaaacaact 13863680  T
Q  102 tgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcc 189  Q
    |||| |||||||||| | ||||| |||||||  ||| |||||||| ||||| ||||||| | || |||| |||||||||| |||||||    
T  13863681 tgagtaataaattaacacaatttccaatacacaattactattagtggaattcttaacatgtgccctaag-gcacaagttaacatttcc 13863767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 43310636 - 43310509
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg---nnnnnnntaatattaaatatgt 101  Q
    ||||||||| |||||||| |||| ||| |||||||||| ||||||||||||||||||| ||| ||||||||||||          |||||||||| || |    
T  43310636 agggtcatgctaacttgtgccctcagggcacatgttaagcattaatgtcattccattaatggaaagaatttattgaaaagaaaaataatattaaacattt 43310537  T
Q  102 tgagcaataaattaatataattttcaat 129  Q
    ||||||||||||||| | ||||||||||    
T  43310536 tgagcaataaattaacacaattttcaat 43310509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 190
Target Start/End: Complemental strand, 972592 - 972408
Alignment:
Q  7 ggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg-nnnnnnntaatattaaatatgttgag 105  Q
    |||||||||||||||| |  ||||| |||||||||| ||||||| ||||| ||||| ||||||||||||| ||        |||||||||| || || |     
T  972592 ggtcatgttaacttgtgcttttagggcacatgttaagcattaatttcatttcattaatggtaagaatttaatgaaaaaaattaatattaaacattttaaa 972493  T
Q  106 caataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttccc 190  Q
    ||||||||||||| | ||| |||||| | |||| ||||||| ||||| ||||||| | || ||||  ||||||||| ||||||||    
T  972492 caataaattaatacagtttccaatacctaatttttattagtggaattcttaacatgtgccctaaggacacaagttaacatttccc 972408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 12568599 - 12568785
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnn--taatattaaatatgtt 102  Q
    ||||||||||||| || | | |||||| ||||||||||||| |||| |||||  |||| ||||||||||||||||         || |||||||||| ||    
T  12568599 agggtcatgttaaattatgctcttagggcacatgttaaacactaatttcattttattaatggtaagaatttattgaaaaattaatagtattaaatatttt 12568698  T
Q  103 gagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcc 189  Q
    |||||||||||||| | ||||| ||||| || |||| ||||| |  |||| ||||||| | || |||| |||||||||| |||||||    
T  12568699 gagcaataaattaagacaatttacaataaataatttttattaatgaaattcttaacatgtgccctaagggcacaagttaacatttcc 12568785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 13545063 - 13545249
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnn--taatattaaatatgtt 102  Q
    ||||||||||||| || | | |||||| ||||||||||||| |||| |||||  |||| ||||||||||||||||         || |||||||||| ||    
T  13545063 agggtcatgttaaattatgctcttagggcacatgttaaacactaatttcattttattaatggtaagaatttattgaaaaattaatagtattaaatatttt 13545162  T
Q  103 gagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcc 189  Q
    |||||||||||||| | ||||| ||||| || |||| ||||| |  |||| ||||||| | || |||| |||||||||| |||||||    
T  13545163 gagcaataaattaagacaatttacaataaataatttttattaatgaaattcttaacatgtgccctaagggcacaagttaacatttcc 13545249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 52378748 - 52378599
Alignment:
Q  13 gttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnntaa-tattaaatatgttgagcaa-ta 110  Q
    |||||||||| || ||||| |||||||||||||||||| | ||| | ||| |||| |||||||||||       ||| ||||||| || || ||||| ||    
T  52378748 gttaacttgtgcctttagggcacatgttaaacattaattttatttctttaatggtgagaatttattgaaaaaaataaatattaaacattttaagcaaata 52378649  T
Q  111 aattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
    |||||||||||||||||||| || ||| |||||| ||||||| |||||||    
T  52378648 aattaatataattttcaataaataattgctattaatagaattcttaacat 52378599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 52915450 - 52915518
Alignment:
Q  7 ggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattt 75  Q
    |||||||||||||||| | |||| |||||||||||| ||||||||||||| ||||| ||||||||||||    
T  52915450 ggtcatgttaacttgtgctcttatgacacatgttaagcattaatgtcatttcattagtggtaagaattt 52915518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 160
Target Start/End: Original strand, 28963354 - 28963512
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg---nnnnnnntaatattaaatatgt 101  Q
    ||||||||||||||||||   |||||| |||||||| | ||||||| ||||||||||| ||||||||||||| ||          |||||||||| |  |    
T  28963354 agggtcatgttaacttgtgttcttagggcacatgtttagcattaatttcattccattaatggtaagaatttaatgaaaaaaaaattaatattaaacaatt 28963453  T
Q  102 tgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
    | |||||||||||||  |||||| |||| ||| ||||||||||||  ||||||||||||    
T  28963454 taagcaataaattaacttaatttccaatgcatcatttctattagtgaaatttttaacat 28963512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 50360819 - 50360648
Alignment:
Q  12 tgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnn--taatattaaatatgttgagcaat 109  Q
    ||||||| |||  |||||||| |||| |||| ||||||| ||||| ||||| ||||||||||| ||||         |||||||||| || |||||||||    
T  50360819 tgttaacctgtgtccttaggatacatattaagcattaatttcatttcattaatggtaagaattaattgaaaaaataataatattaaacattttgagcaat 50360720  T
Q  110 aaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagtta 181  Q
    ||||||| |  |||||||||| || |||| ||||||||||||| |||| || | || |||| ||||||||||    
T  50360719 aaattaacaccattttcaatatataatttatattagtagaattcttaatatgtgccctaagggcacaagtta 50360648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 43310428 - 43310339
Alignment:
Q  101 ttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttccc 190  Q
    |||||||||||||||| | ||||| |||||||  |||||||||||||||||| ||||||| | |  |||  |||||||||||||||||||    
T  43310428 ttgagcaataaattaacacaatttccaatacaaaatttctattagtagaattcttaacatgtgctctaaaggcacaagttagcatttccc 43310339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 21290205 - 21290315
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatt 186  Q
    |||||||| || | || ||||||||||||| ||||||| | |||||| |||||||||| | |||| |||||||| | || |||| |||||| ||| ||||    
T  21290205 taatattatattttttaagcaataaattaacataatttccgatacataatttctattaatggaatatttaacatgtgccataagggcacaaattaacatt 21290304  T
Q  187 tcccatatttt 197  Q
    |||||| ||||    
T  21290305 tcccatttttt 21290315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 50699808 - 50699864
Alignment:
Q  104 agcaataaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
    ||||||||||||| | ||||| ||||||||||||||||||||| ||||| |||||||    
T  50699808 agcaataaattaacacaatttccaatacatgatttctattagtggaattcttaacat 50699864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 160
Target Start/End: Complemental strand, 21490552 - 21490397
Alignment:
Q  6 gggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattt-attgnnnnnnntaatattaaatatgttga 104  Q
    |||||||||||||| || |  ||| |||||||||||||||||||| |||||  |||| |||||| ||||| ||         |||||||||| || ||||    
T  21490552 gggtcatgttaactcgtgcagttatgacacatgttaaacattaatttcattatattaatggtaaaaatttaataaaaatatttaatattaaacattttga 21490453  T
Q  105 gcaataaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
     ||||||||||| | ||||| ||||| || |||| ||||||| ||||| |||||||    
T  21490452 acaataaattaacacaatttccaatatataatttatattagtggaattcttaacat 21490397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 38773694 - 38773649
Alignment:
Q  4 tagggtcatgttaacttgtacccttaggacacatgttaaacattaa 49  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||||    
T  38773694 tagggtcatgttaacttgtgcccttagggcacatgttaagcattaa 38773649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 51980684 - 51980728
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaa 49  Q
    |||||||||||||||||| |||||||| |||||||||| ||||||    
T  51980684 agggtcatgttaacttgtgcccttagggcacatgttaagcattaa 51980728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 7681637 - 7681720
Alignment:
Q  107 aataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttccc 190  Q
    |||||||||| | ||||| |||||||  ||| ||||||||||||||  |||||||| |  |||||||||||||||  |||||||    
T  7681637 aataaattaacacaatttccaatacacaattactattagtagaattcataacatatgctctaagagcacaagttaaaatttccc 7681720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 42709898 - 42709969
Alignment:
Q  87 taatattaaatatgttgagcaataaattaata-taattttcaatacatgatttctattagtagaatttttaa 157  Q
    ||||||||||||| |||| ||||||||||| | |||||| | |||||| |||| ||||||| ||||||||||    
T  42709898 taatattaaatattttgatcaataaattaacactaatttccgatacataatttttattagtggaatttttaa 42709969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 196
Target Start/End: Complemental strand, 11042818 - 11042713
Alignment:
Q  90 tattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcc 189  Q
    |||||||| | |||||||||||||||| ||||||||  |||||  |||||||||| | ||||  |||||||    ||||||||||||| ||| |||||||    
T  11042818 tattaaattttttgagcaataaattaacataatttttgatacaatatttctattattggaatccttaacat-gcgcttaagagcacaaattaacatttcc 11042720  T
Q  190 catattt 196  Q
    | |||||    
T  11042719 cttattt 11042713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 37387516 - 37387474
Alignment:
Q  1 ttttagggtcatgttaacttgtacccttaggacacatgttaaa 43  Q
    |||||||||||||||||||||| |||| ||| |||||||||||    
T  37387516 ttttagggtcatgttaacttgtgccctaagggcacatgttaaa 37387474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 50524231 - 50524305
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg 79  Q
    |||||||||||||||| | || |||   ||||||||||| |||||| |||||| |||| |||||| |||||||||    
T  50524231 agggtcatgttaacttatgcctttaaagcacatgttaaatattaatttcattctattaatggtaaaaatttattg 50524305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 11042915 - 11042882
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatg 38  Q
    ||||||||||||||||||||||||| ||||||||    
T  11042915 agggtcatgttaacttgtacccttatgacacatg 11042882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24355443 - 24355484
Alignment:
Q  1 ttttagggtcatgttaacttgtacccttaggacacatgttaa 42  Q
    |||||||||||||||||||||| |||||| | ||||||||||    
T  24355443 ttttagggtcatgttaacttgtgcccttaaggcacatgttaa 24355484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 13638059 - 13638023
Alignment:
Q  7 ggtcatgttaacttgtacccttaggacacatgttaaa 43  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  13638059 ggtcatgttaacttgtaccctgagggcacatgttaaa 13638023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 188
Target Start/End: Complemental strand, 11258037 - 11257854
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnntaatattaaatatgttga 104  Q
    |||||||||||||||||| |||||||| |||||||||||||||| | |||||| | || ||||||||||||| ||       |||||||||| || || |    
T  11258037 agggtcatgttaacttgtgcccttagggcacatgttaaacattattttcattcaaataatggtaagaatttaatgaaaaaattaatattaaacattttaa 11257938  T
Q  105 gcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttc 188  Q
    |||||||||||| | |||||  ||||||| |||||||||||| ||||| ||||||| | || |||| |||||||||| ||||||    
T  11257937 gcaataaattaacacaatttataatacataatttctattagtggaattcttaacatgtgccctaagggcacaagttaacatttc 11257854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 5895992 - 5896179
Alignment:
Q  8 gtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnn--taatattaaatatgttgag 105  Q
    ||||| |||||||||||||||||| || ||||||| ||||||| ||||||| ||| | ||||||||||||||         |||||||||| || |||||    
T  5895992 gtcattttaacttgtacccttagggcatatgttaagcattaatttcattcctttaatagtaagaatttattgaaaaaagattaatattaaacattttgag 5896091  T
Q  106 caataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcccata 193  Q
    ||||||||||| | ||||||||| | || |||||||||| | |||||||||| || | ||||||| || ||||||| ||||| |||||    
T  5896092 caataaattaacacaattttcaacaaataatttctattaatggaatttttaatatgtgccttaagggcgcaagttaacattttccata 5896179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 6393723 - 6393549
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg-nnnnnnntaatattaaatatgttg 103  Q
    ||||||||| ||| ||||  ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||        |||||||||| || |||    
T  6393723 agggtcatgctaatttgtgtccttatgacacatgttaaacattaatgtcattcaattaatggtaagaatttattgtaaaaaattaatattaaacattttg 6393624  T
Q  104 agcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaag 178  Q
    |||| |||||||| | ||||||  |||||| ||||||||||  |||||| ||||||| | || |||| |||||||    
T  6393623 agcagtaaattaacacaattttttatacataatttctattaacagaattcttaacatgtgccctaagtgcacaag 6393549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 160
Target Start/End: Complemental strand, 38869939 - 38869783
Alignment:
Q  6 gggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg--nnnnnnntaatattaaatatgttg 103  Q
    ||||||||||||||||| |||||| | |||||||||||||||||| ||||||||||| ||||| ||||||||||         |||| ||||| || |||    
T  38869939 gggtcatgttaacttgtgcccttaaggcacatgttaaacattaatttcattccattaatggtatgaatttattgaaaaacaagtaattttaaacattttg 38869840  T
Q  104 agcaataaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
     |||||||||||| | |||||| ||||||| |||||||||||| | ||| |||||||    
T  38869839 tgcaataaattaacacaatttttaatacataatttctattagtggcattcttaacat 38869783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 26014837 - 26015022
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg-nnnnnnntaatattaaatatgttg 103  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||  |||||||||| | ||||||||||||||        ||| |||||| || |||    
T  26014837 agggtcatgttaacttgtacccttagggcacatgttaagcattaatagcattccattaatagtaagaatttattgaaaaaaattaacattaaacattttg 26014936  T
Q  104 agcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcc 189  Q
    |  |||||||||| | || || |||||||| |||||||||| | | ||| |||| || |||||| ||| |||||| || |||||||    
T  26014937 aataataaattaacacaaattccaatacataatttctattaatggtattcttaatatgtacctttagaacacaagctatcatttcc 26015022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 30069693 - 30069880
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg--nnnnnnntaatattaaatatgtt 102  Q
    |||||||||||||||||| | |||||| |||||||||| |||| || ||||||||||| |  |||||||||| ||         || ||||||| |  ||    
T  30069693 agggtcatgttaacttgtgctcttagggcacatgttaagcatttatttcattccattaataataagaatttaatggaaaaaagttagtattaaacaactt 30069792  T
Q  103 gagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttccc 190  Q
    ||| |||||||||| | ||||| |||||||  ||| |||||||| ||||| ||||||| | ||||||| |||||||||| ||||||||    
T  30069793 gagtaataaattaacacaatttccaatacacaattactattagtggaattcttaacatgtgccttaagggcacaagttaacatttccc 30069880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 41128226 - 41128156
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaa 157  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||| |||| ||||||| ||||| ||||    
T  41128226 taatattaaatattttgagcaataaattaacataattttcaatacataatttatattagtggaattcttaa 41128156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 1042781 - 1042855
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacata 161  Q
    |||||||||| || || ||||||||||||| | |||||||||||||| ||||||||||||  |||||||||||||    
T  1042781 taatattaaacattttaagcaataaattaacacaattttcaatacataatttctattagtgaaatttttaacata 1042855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 160
Target Start/End: Original strand, 8072433 - 8072587
Alignment:
Q  6 gggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnnt-aatattaaatatgttga 104  Q
    |||||||||||| || | |||||||| |||||||||| ||||| | |||||| | || ||||||||||||| ||       | ||||||||| || ||||    
T  8072433 gggtcatgttaattt-tgcccttagggcacatgttaagcattattttcattcaaataatggtaagaatttaatgaaaaaaattaatattaaacattttga 8072531  T
Q  105 gcaataaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
     | ||||||||| | |||||||||||||| |||||||||||| ||||| |||||||    
T  8072532 accataaattaacacaattttcaatacataatttctattagtggaattcttaacat 8072587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 36660765 - 36660691
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg 79  Q
    |||||||||||||||||| |||||| | || ||||||| ||||||| || |||||||| ||||||||||||||||    
T  36660765 agggtcatgttaacttgtgcccttaaggcatatgttaaccattaatttcgttccattaatggtaagaatttattg 36660691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 7107506 - 7107602
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagc 183  Q
    ||||||| || || |||||||||||||| | | ||||| |||||||| |||||||||||| ||||| ||||||| | || |||| ||||||||||||    
T  7107506 taatattcaacattttgagcaataaatttacacaatttccaatacataatttctattagtggaattcttaacatgtgccataagggcacaagttagc 7107602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 37456103 - 37456191
Alignment:
Q  101 ttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcc 189  Q
    ||||| |||||||||| | ||||| |||||||| |||||||||||| ||||| ||||||  | || |||| ||||||||||||||||||    
T  37456103 ttgagtaataaattaacacaatttccaatacataatttctattagtggaattcttaacacgtgccctaagggcacaagttagcatttcc 37456191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 16037457 - 16037307
Alignment:
Q  11 atgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnnt--aatattaaatatgttgagcaa 108  Q
    |||||||||||  |||||| |||||||||||||||||| || |||||||||| |||||  ||||||||        |  ||||||||| || |||| |||    
T  16037457 atgttaacttgcgcccttaagacacatgttaaacatta-tggcattccattaatggtagaaatttatttcaaaaaatttaatattaaacattttgaccaa 16037359  T
Q  109 taaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
    |||||||||| ||||| | |||||| |||||||| ||| ||||| |||||||    
T  16037358 taaattaatacaatttccgatacataatttctatcagtggaattcttaacat 16037307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 36068486 - 36068416
Alignment:
Q  6 gggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattta 76  Q
    ||||||||||||||||| |||| | |||||||||||| ||||| | |||||||| || |||||||||||||    
T  36068486 gggtcatgttaacttgtgccctcaagacacatgttaagcattattttcattccaataatggtaagaattta 36068416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 2540292 - 2540250
Alignment:
Q  7 ggtcatgttaacttgtacccttaggacacatgttaaacattaa 49  Q
    |||||||||||||||||||||||| ||||||||||| ||||||    
T  2540292 ggtcatgttaacttgtacccttagaacacatgttaagcattaa 2540250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 9402862 - 9402932
Alignment:
Q  6 gggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattta 76  Q
    ||||||||||||||| | |||||||| |||||||||| ||||| | ||||| || || |||||||||||||    
T  9402862 gggtcatgttaacttctgcccttagggcacatgttaagcattattttcatttcaataatggtaagaattta 9402932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 31411047 - 31410980
Alignment:
Q  12 tgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg 79  Q
    |||||||||||||| |||||  ||||||||| ||||||| ||||| | ||| | ||||||||||||||    
T  31411047 tgttaacttgtaccattagggtacatgttaagcattaatttcatttctttaatagtaagaatttattg 31410980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 40651708 - 40651605
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatt-tttaacatataccttaagagcacaagttagcat 185  Q
    |||||||||| || ||||| ||||||| | || |||||||||||||| |||| ||| | | ||||| |||||||| |||| |||  |||||||||| |||    
T  40651708 taatattaaacattttgagtaataaataattacaattttcaatacataatttttatcaatggaattctttaacatgtaccctaaaggcacaagttaacat 40651609  T
Q  186 ttcc 189  Q
    ||||    
T  40651608 ttcc 40651605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 43352084 - 43352130
Alignment:
Q  151 tttttaacatataccttaagagcacaagttagcatttcccatatttt 197  Q
    |||| ||| ||| ||||||| ||||||||||||||||||||||||||    
T  43352084 ttttgaacttatgccttaagggcacaagttagcatttcccatatttt 43352130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 2539920 - 2539832
Alignment:
Q  101 ttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttccc 190  Q
    |||||||||||||||||  ||||||| | |||| |||||||||| || || | ||||||| | || |||| |||||||||| ||||||||    
T  2539920 ttgagcaataaattaatgcaattttcgagacataatttctattaata-aaatcttaacatgtgccataagggcacaagttaacatttccc 2539832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 3213641 - 3213811
Alignment:
Q  8 gtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnntaatattaaatatgttgagca 107  Q
    |||||||||||| ||  | ||||| |||||||||||||||||| ||||||||||| | |||| || ||||||       ||||||||||||| |||||||    
T  3213641 gtcatgttaactcgtgtctttagggcacatgttaaacattaatttcattccattaattgtaaaaaattattgaaaa---taatattaaatattttgagca 3213737  T
Q  108 ataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagtta 181  Q
    ||||||||  ||||||||| ||| || |||||||||| ||||||  ||||||||| ||||||||||||||||||    
T  3213738 ataaattagcataattttccatatataatttctattaatagaatgcttaacatatgccttaagagcacaagtta 3213811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 32785782 - 32785913
Alignment:
Q  30 ggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnnt-aatattaaatatgttgagcaataaattaatataattttcaa 128  Q
    ||||||||||||| |||| |||| |||| |||| ||||||||||||||||       | |||||||||||| |||||||||||||||| ||||||| |||    
T  32785782 ggacacatgttaagcattgatgtaattctattaatggtaagaatttattgaaagaaatcaatattaaatattttgagcaataaattaaaataatttccaa 32785881  T
Q  129 tacatgatttctattagtagaatttttaacat 160  Q
    ||||| |||||||||||| ||||| |||||||    
T  32785882 tacataatttctattagtggaattcttaacat 32785913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 160
Target Start/End: Original strand, 33972583 - 33972739
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnntaatattaaatatgttga 104  Q
    |||||||||||||||||| | |||||  |||||||||| ||||||| ||||||||||| ||||||||||| ||||        | ||||||| || ||||    
T  33972583 agggtcatgttaacttgtgctcttagagcacatgttaagcattaatttcattccattaatggtaagaattaattgaaaaataaattattaaacattttga 33972682  T
Q  105 gcaataaattaatataattttcaatacatgattt-ctattagtagaatttttaacat 160  Q
     ||||||||||| || |||| |||||||| |||| |||||||||||||| |||||||    
T  33972683 acaataaattaacatcatttccaatacataatttcctattagtagaattcttaacat 33972739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 17506519 - 17506419
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatt 186  Q
    ||||||| ||||| || || | |||||||| | |||||  ||||||| |||||||||||| ||||||||||||||| |  ||||||||||||||||||||    
T  17506519 taatattcaatatcttaagtattaaattaacacaatttcaaatacataatttctattagtggaatttttaacatatgctctaagagcacaagttagcatt 17506420  T
Q  187 t 187  Q
    |    
T  17506419 t 17506419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 12141684 - 12141755
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattta 76  Q
    |||||||||||||||||| |  ||| |||||||||||||||||||| ||||||||||| || ||| ||||||    
T  12141684 agggtcatgttaacttgtgcatttaagacacatgttaaacattaatttcattccattaatgataaaaattta 12141755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 154372 - 154326
Alignment:
Q  3 ttagggtcatgttaacttgtacccttaggacacatgttaaacattaa 49  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||    
T  154372 ttagggtcatgttaacttgtgcccttaagacacatgttaaacattaa 154326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 8853792 - 8853724
Alignment:
Q  11 atgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg 79  Q
    ||||||| ||||  ||||||| || ||||||| ||||||||||||| ||||| ||||||||||||||||    
T  8853792 atgttaatttgtggccttagggcatatgttaatcattaatgtcatttcattaatggtaagaatttattg 8853724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 7269667 - 7269712
Alignment:
Q  4 tagggtcatgttaacttgtacccttaggacacatgttaaacattaa 49  Q
    ||||||||| ||||||||| || ||||| |||||||||||||||||    
T  7269667 tagggtcatattaacttgtgcctttagggcacatgttaaacattaa 7269712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 11109060 - 11109097
Alignment:
Q  8 gtcatgttaacttgtacccttaggacacatgttaaaca 45  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  11109060 gtcatgttaacttgtgccctaaggacacatgttaaaca 11109097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 260285 - 260472
Alignment:
Q  4 tagggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg-nnnnnnntaatattaaatatgtt 102  Q
    ||||||||||||||||||| ||||||||   |||||||| ||||||||||||||||||| ||||||||||||||||        ||| |||||| || ||    
T  260285 tagggtcatgttaacttgtgcccttagggtccatgttaagcattaatgtcattccattaatggtaagaatttattgaaaaaaattaacattaaacatttt 260384  T
Q  103 gagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttccc 190  Q
    || ||||||||||| | || ||||||||||| |||||||||||| | ||| |||| || | || | || |||||||||| ||||||||    
T  260385 gaacaataaattaacacaaatttcaatacataatttctattagtggtattcttaatatgtgcccttagggcacaagttatcatttccc 260472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 10044141 - 10044282
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg--nnnnnnntaatattaaatatgtt 102  Q
    ||||||||||||||||||  |||||||| |||||||||||| |||| ||||| ||||| ||||||||||||||||         |||||||||| || ||    
T  10044141 agggtcatgttaacttgtgtccttaggatacatgttaaacactaatttcatttcattaatggtaagaatttattgaaaaataattaatattaaacatttt 10044240  T
Q  103 gagcaataaattaatataattttcaatacatgatttctatta 144  Q
    |||||||||||||| | || ||||||||||| ||||||||||    
T  10044241 gagcaataaattaacacaactttcaatacataatttctatta 10044282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 193
Target Start/End: Complemental strand, 21369269 - 21369107
Alignment:
Q  34 acatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnn--taatattaaatatgttgagc-aataaattaatataattttcaata 130  Q
    ||||||||||||||||| ||||||||||| ||||||||||||| ||         ||||||||||||| || ||| |||||||||| | |||||||||||    
T  21369269 acatgttaaacattaatttcattccattaatggtaagaatttaatgaaaaaaaattaatattaaatattttaagctaataaattaacacaattttcaata 21369170  T
Q  131 catgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcccata 193  Q
    |||||| |||||||||  |||  |||||||   ||||||| |||||||||| |||||||||||    
T  21369169 catgatatctattagtgaaatccttaacatgcgccttaagggcacaagttaacatttcccata 21369107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 195
Target Start/End: Complemental strand, 17566846 - 17566682
Alignment:
Q  33 cacatgttaaacattaatgtcattccattattggtaagaattta-ttgnnnnnnnt-aatattaaatatgttgagcaataaattaatataattttcaata 130  Q
    |||||||||||||||||| |||||| |||| || |||||||||| |||       | ||||||||| ||||||| |||||||| || | || ||||||||    
T  17566846 cacatgttaaacattaatttcattctattaatgataagaatttaattgaaaaaaattaatattaaacatgttgaacaataaataaacacaaatttcaata 17566747  T
Q  131 catgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcccatatt 195  Q
    ||  |||||||||||||||||| |||| || | |  |||| |||||||||| |||||||| ||||    
T  17566746 caaaatttctattagtagaattcttaatatgtgcactaagggcacaagttatcatttcccttatt 17566682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 28024138 - 28024236
Alignment:
Q  34 acatgttaaacattaatgtcattccattattggtaagaatttattg--nnnnnnntaatattaaatatgttgagcaataaattaatataattttcaata 130  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||         ||||||||||||| ||||||| |||||||| |||||| ||||||    
T  28024138 acatgttaaacattaatgtcattctattaattgtaagaatttattgaaaaagagttaatattaaatattttgagcattaaattaacataattatcaata 28024236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 42655897 - 42656080
Alignment:
Q  7 ggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg-nnnnnnntaatattaaatatgttgag 105  Q
    |||||||||||||||| |||||| |||||||||||||||||||  || |  || || ||||||| ||| ||||        |||||||| || | |||||    
T  42655897 ggtcatgttaacttgtgcccttaagacacatgttaaacattaaattcttgacactaatggtaagtattaattgaaaaaaattaatattagattttttgag 42655996  T
Q  106 caataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcc 189  Q
    ||||||||||||  ||||||| | |||| ||||||| ||||| |||  ||||||| || | |||| ||| |||||| |||||||    
T  42655997 caataaattaatgcaattttcgagacataatttctactagtaaaatccttaacatgtatcataagggcataagttaacatttcc 42656080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 193
Target Start/End: Complemental strand, 32317702 - 32317560
Alignment:
Q  53 cattccattattggtaagaatttattgnnnnnnnt-aatattaaatatgtt-gagcaataaattaatataattttcaatacatgatttctattagtagaa 150  Q
    |||||||||| ||||||||||||||||       | |||||| ||||| || || ||||||||||| | |||||| |||| || |||||||||| |  ||    
T  32317702 cattccattaatggtaagaatttattgaaaacaattaatatttaatatttttgaacaataaattaacacaatttttaatatataatttctattattgaaa 32317603  T
Q  151 tttttaacatataccttaagagcacaagttagcatttcccata 193  Q
    || |||||||||||||||||| || || |||||||||| ||||    
T  32317602 ttattaacatataccttaagaacataaattagcatttcgcata 32317560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 2903436 - 2903377
Alignment:
Q  101 ttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
    |||||||||||||||| ||||||| | | |||| |||||||||||||||||| |||||||    
T  2903436 ttgagcaataaattaacataatttccgagacataatttctattagtagaattcttaacat 2903377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 25037236 - 25037279
Alignment:
Q  6 gggtcatgttaacttgtacccttaggacacatgttaaacattaa 49  Q
    ||||||||||||||||| | ||||||||||||||||||||||||    
T  25037236 gggtcatgttaacttgtgctcttaggacacatgttaaacattaa 25037279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 25837504 - 25837433
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattta 76  Q
    |||||| ||||||||| | |||||| |||||||||||| ||||||| |||||  |||| |||||||||||||    
T  25837504 agggtcttgttaacttatgcccttaagacacatgttaagcattaatttcattatattaatggtaagaattta 25837433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 5402789 - 5402872
Alignment:
Q  107 aataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttccc 190  Q
    |||||||||| | ||||| |||||||  ||| |||||| | ||||||||||||| | ||||||| | |||||||| ||||||||    
T  5402789 aataaattaacacaatttccaatacacaattactattaatggaatttttaacatgtgccttaaggggacaagttaacatttccc 5402872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 10333882 - 10333780
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatt 186  Q
    ||||||||||| | |||||||||||||||||  | ||||||| |||| |||| ||||||| ||||  |||| || |  |||||| |||||| ||| ||||    
T  10333882 taatattaaattttttgagcaataaattaatgcatttttcaagacataatttttattagttgaatccttaatatgtgtcttaagggcacaaattaacatt 10333783  T
Q  187 tcc 189  Q
    |||    
T  10333782 tcc 10333780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 16285912 - 16285969
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctatta 144  Q
    |||||||||||||  | ||||||||||||| | |||||||||| ||| ||||||||||    
T  16285912 taatattaaatattcttagcaataaattaacacaattttcaatgcataatttctatta 16285969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 5511 - 5551
Alignment:
Q  7 ggtcatgttaacttgtacccttaggacacatgttaaacatt 47  Q
    ||||||||||||||||  |||||| ||||||||||||||||    
T  5511 ggtcatgttaacttgtgtccttagaacacatgttaaacatt 5551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 29429776 - 29429740
Alignment:
Q  6 gggtcatgttaacttgtacccttaggacacatgttaa 42  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  29429776 gggtcatgttaacttgtgcccttagggcacatgttaa 29429740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 32135907 - 32135803
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatt 186  Q
    |||||||| || | |||||||||||||||    ||||| | | |||| |||||||||||| ||||  ||||||| | || |||||||| |||||| ||||    
T  32135907 taatattagattttttgagcaataaattatcgcaatttacgagacataatttctattagtggaatccttaacatgtgccctaagagcagaagttaacatt 32135808  T
Q  187 tccca 191  Q
    |||||    
T  32135807 tccca 32135803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 32227620 - 32227432
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnn---taatattaaatatgt 101  Q
    |||||| |||||| |||| |  ||||| |||||||||| ||||||| ||||||||||| |||||| |||||| ||          |||||||||| || |    
T  32227620 agggtcgtgttaatttgtgcttttagggcacatgttaagcattaatttcattccattaatggtaataatttaatgaaaaaaaaattaatattaaacattt 32227521  T
Q  102 tgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttccc 190  Q
    | | |||||||| || | |||||||||||||| |||||||||||||||||| ||||||||| || |||| ||||| |||| ||||||||    
T  32227520 taaacaataaatgaacacaattttcaatacataatttctattagtagaattcttaacatatgccctaagggcacatgttaacatttccc 32227432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 157
Target Start/End: Complemental strand, 41766463 - 41766314
Alignment:
Q  9 tcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnnt-aatattaaatatgttgagca 107  Q
    |||||||||||||| |||| | |||||||||||||||||||| |||||  |||| |||||| ||||  |||       | ||||||||| || |||||||    
T  41766463 tcatgttaacttgtgccctcatgacacatgttaaacattaatttcatttaattaatggtaaaaattagttgaaaaaaattaatattaaacattttgagca 41766364  T
Q  108 ataaattaatataattttcaatacatgatttctattagtagaatttttaa 157  Q
    ||||| ||| | |||||||||||||| |||| ||||||||||||||||||    
T  41766363 ataaaataacacaattttcaatacataatttatattagtagaatttttaa 41766314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 196
Target Start/End: Complemental strand, 40534403 - 40534211
Alignment:
Q  4 tagggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattgnnnnnnntaatattaaatatgttg 103  Q
    |||||| |||||||||||| | |||||| |||||||||||||||||| |||| |||||| | ||||||||||| ||       || ||||||| |  |||    
T  40534403 tagggttatgttaacttgtgctcttagggcacatgttaaacattaatttcataccattaatagtaagaatttaatggaaaaattagtattaaacaacttg 40534304  T
Q  104 agcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcccatattt 196  Q
    || |||||||||| | |||||||||||||  ||| | |||||| ||||| ||||| | |||| |||  | |||||||| |||||||| |||||    
T  40534303 agtaataaattaacacaattttcaatacacaattacgattagtggaattcttaacttgtaccctaaatgtacaagttaacatttcccttattt 40534211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 14776451 - 14776270
Alignment:
Q  9 tcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattt-attgnnnnnnntaatattaaatatgttgagca 107  Q
    ||||||||||||||  |||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||         |||||||||| |  ||||| |    
T  14776451 tcatgttaacttgtgtccttaggacacatgttaaacattaatttcatttcattaatggtaagaatttgatgaaaaaaattaatattaaacaatttgagta 14776352  T
Q  108 ataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcc 189  Q
    ||||||||| | |||||||||||||| ||| ||| || || |||| ||||||| | |  |||  |||||||||| |||||||    
T  14776351 ataaattaacacaattttcaatacataattactaatattaaaattcttaacatgtgctctaatggcacaagttaacatttcc 14776270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 32656344 - 32656243
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatt 186  Q
    ||||||||||||| || | ||||||||||| | || ||||||||||||||||||||||||  |||| ||||||| | || |||| |||||||||| ||||    
T  32656344 taatattaaatattttaatcaataaattaacacaagtttcaatacatgatttctattagtgaaattcttaacatgtgccctaagggcacaagttaacatt 32656245  T
Q  187 tc 188  Q
    ||    
T  32656244 tc 32656243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 10500488 - 10500417
Alignment:
Q  8 gtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg 79  Q
    ||||||||||||||| || ||| | |||||||||| ||||||||| ||||||||| ||||||||||||||||    
T  10500488 gtcatgttaacttgtgccgttaaggcacatgttaagcattaatgtaattccattaatggtaagaatttattg 10500417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 33830309 - 33830395
Alignment:
Q  101 ttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcattt 187  Q
    |||||||||||||||| | ||||| |||||||| ||||||||||||| |||| |||||||||||  |||| ||| |||||| |||||    
T  33830309 ttgagcaataaattaacacaatttccaatacataatttctattagtaaaattcttaacatatactataagggcataagttaacattt 33830395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 41465382 - 41465452
Alignment:
Q  9 tcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg 79  Q
    ||||||||||||||  ||||||| || ||||||| |||||||||||| |||| | ||||||||||||||||    
T  41465382 tcatgttaacttgtgtccttagggcagatgttaatcattaatgtcataccatcaatggtaagaatttattg 41465452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 9374128 - 9374055
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
    |||||||||| || |||||||||||||||| | ||||| |||||||| |||||| ||| |  ||||||||||||    
T  9374128 taatattaaacattttgagcaataaattaaaacaatttccaatacataatttctgttaatgaaatttttaacat 9374055  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 30326107 - 30326184
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatatac 164  Q
    |||||||||| || ||||| |||||||||| | |||||||||||||| |||||| ||| |  |||| |||||||||||    
T  30326107 taatattaaacattttgagtaataaattaacacaattttcaatacataatttctcttaatgaaattcttaacatatac 30326184  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 43305523 - 43305458
Alignment:
Q  126 caatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttccca 191  Q
    |||||||| |||||||||||||||||| ||||||| | || ||||  ||||||||| |||||||||    
T  43305523 caatacataatttctattagtagaattattaacatgtgccctaaggacacaagttatcatttccca 43305458  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 196
Target Start/End: Original strand, 35327744 - 35327935
Alignment:
Q  6 gggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg--nnnnnnntaatattaaatatgttg 103  Q
    ||||||||||||| ||| |||| |||  ||||||||||||||||| ||||| ||||| |  |||||||||| ||         || ||||||| |  |||    
T  35327744 gggtcatgttaacatgtgccctcagggtacatgttaaacattaatttcatttcattaatattaagaatttaatggaaaaaaattagtattaaacaacttg 35327843  T
Q  104 agcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatttcccatattt 196  Q
    || |||||||||| | | |||||||||||  ||| |||||||| ||||| || |||| |  |||||| |||||||||| |||||||| |||||    
T  35327844 agtaataaattaacacagttttcaatacacaattactattagtggaattctt-acatgtgtcttaagggcacaagttaacatttcccttattt 35327935  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 45075736 - 45075680
Alignment:
Q  104 agcaataaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
    ||||||||||||| | |||||||||||||| |||| |||||||  ||||||||||||    
T  45075736 agcaataaattaacacaattttcaatacataatttatattagtgaaatttttaacat 45075680  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 27414046 - 27414117
Alignment:
Q  8 gtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg 79  Q
    ||||||||||||||| |||||||| |||||||||| ||||||  || | |||||| ||||||| ||| ||||    
T  27414046 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccattaatggtaagtattaattg 27414117  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 12497371 - 12497298
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
    |||||||||| || || ||||||||||||| | ||||| | | ||||||||||||||||  ||||| |||||||    
T  12497371 taatattaaacattttaagcaataaattaacacaatttccgacacatgatttctattagcggaattcttaacat 12497298  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 11941671 - 11941627
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaa 49  Q
    ||||||||||||| |||| || |||||||||||||||| ||||||    
T  11941671 agggtcatgttaaattgtgcctttaggacacatgttaagcattaa 11941627  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 33830213 - 33830268
Alignment:
Q  7 ggtcatgttaacttgtacccttag-gacacatgttaaacattaatgtcattccatta 62  Q
    |||||||||||||||| || |||| ||| |||||||| |||||||||||||||||||    
T  33830213 ggtcatgttaacttgtgcctttagagac-catgttaagcattaatgtcattccatta 33830268  T

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Target: scaffold0154 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 36407 - 36510
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatt 186  Q
    ||||||||||||| ||||| |||||||||| | ||||| |||||||| |||||||||||| ||||| ||||||| | | ||||| |||||||||| ||||    
T  36407 taatattaaatattttgagaaataaattaacacaatttccaatacataatttctattagtggaattcttaacatgtgctttaagggcacaagttaacatt 36506  T
Q  187 tccc 190  Q
    ||||    
T  36507 tccc 36510  T

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Target: scaffold0524 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 1394 - 1552
Alignment:
Q  1 ttttagggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg--nnnnnnntaatattaaata 98  Q
    |||||||||| |||||||||||||||||||  || ||| ||| ||||||||||||| ||||| | ||||||||||||||         |||||| ||| |    
T  1394 ttttagggtcctgttaacttgtacccttagagcatatgataagcattaatgtcatttcattaatagtaagaatttattgaaaacaaattaatatcaaaca 1493  T
Q  99 tgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaa 157  Q
    | |||||||||||||||| | ||||| | |||||| |||||||||| | ||||| ||||    
T  1494 ttttgagcaataaattaacacaatttccgatacataatttctattaatggaattcttaa 1552  T

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Target: scaffold0129 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 160
Target Start/End: Complemental strand, 37708 - 37553
Alignment:
Q  5 agggtcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaatttattg--nnnnnnntaatattaaatatgtt 102  Q
    |||||||||||||||||| ||||||  ||| ||||||||||||||| ||||| ||||| ||| || |||||| ||         |||||||||| || ||    
T  37708 agggtcatgttaacttgtgccctta--acaaatgttaaacattaatttcatttcattaatggaaataatttaatgaaaaaaaattaatattaaacatttt 37611  T
Q  103 gagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacat 160  Q
     ||||||||||||| | |||||  ||||||||| ||||||||||  |||| |||||||    
T  37610 aagcaataaattaacacaatttctaatacatgacttctattagtgaaattcttaacat 37553  T

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Target: scaffold1157 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1157
Description:

Target: scaffold1157; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 1940 - 2044
Alignment:
Q  87 taatattaaatatgttgagcaataaattaatataattttcaatacatgatttctattagtagaatttttaacatataccttaagagcacaagttagcatt 186  Q
    |||||||| || | || ||||||||||||| | ||||||| | |||| |||||||||||| ||||  ||||||| | || |||| |||||||||| ||||    
T  1940 taatattagattttttaagcaataaattaacacaattttcgagacataatttctattagtggaatcattaacatgtgccctaagggcacaagttaacatt 2039  T
Q  187 tccca 191  Q
    |||||    
T  2040 tccca 2044  T

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Target: scaffold0061 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 9072 - 9139
Alignment:
Q  9 tcatgttaacttgtacccttaggacacatgttaaacattaatgtcattccattattggtaagaattta 76  Q
    |||||||||||||| ||||||||||||||||||| ||||||| | |||||| || ||| || ||||||    
T  9072 tcatgttaacttgttcccttaggacacatgttaagcattaattttattccactaatggcaataattta 9139  T

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