View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2290_low_3 (Length: 281)
Name: NF2290_low_3
Description: NF2290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2290_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 3238240 - 3238489
Alignment:
| Q |
20 |
agcagctcattcaaatttcgatttgcaacaggtctatagtgtcgctattgccgctgtattttgtactaattaacatattgcagaacaatagcgattagtt |
119 |
Q |
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| T |
3238240 |
agcagctcattcaaatttcgatttgcaacaggtctatagtgtcgctattgccgctgtattttgtactaattaacatattgcagaacaatagcgattagtt |
3238339 |
T |
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| Q |
120 |
caaattcgctatctatagtaccgctgcagccgctatttaataaattcttccacctaaaatgattatctctagtcgccaatcttcaaagttataaaaagaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238340 |
caaattcgctatctatagtaccgctgcagccgctatttaataaattcttccacctaaaatgattatctctagtcgccaatcttcaaagttataaaaagaa |
3238439 |
T |
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| Q |
220 |
ttatagacacaaatgctcgatcaacctgtactttaggtaatgcacaggtt |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238440 |
ttatagacacaaatgctcgatcaacctgtactttaggtaatgcacaggtt |
3238489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 48198079 - 48198123
Alignment:
| Q |
79 |
tttgtactaattaacatattgcagaacaatagcgattagttcaaa |
123 |
Q |
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| T |
48198079 |
tttgtactaaataacatatcacagaacaatagcgattagttcaaa |
48198123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 16169188 - 16169232
Alignment:
| Q |
80 |
ttgtactaattaacatattgcagaacaatagcgattagttcaaat |
124 |
Q |
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| T |
16169188 |
ttgtactcaatagcatatcgcagaacaatagcgattagttcaaat |
16169232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 20981319 - 20981269
Alignment:
| Q |
76 |
tattttgtactaattaacatattgcagaacaatagcgattagttcaaattc |
126 |
Q |
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|||||| |||||| || | |||||||||||||||| ||||||||||||||| |
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| T |
20981319 |
tattttatactaaatagcgtattgcagaacaatagtgattagttcaaattc |
20981269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 39647140 - 39647189
Alignment:
| Q |
77 |
attttgtactaattaacatattgcagaacaatagcgattagttcaaattc |
126 |
Q |
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| T |
39647140 |
attttgtactaaatagcatatcgcagaacaataacgatttgttcaaattc |
39647189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 55314542 - 55314496
Alignment:
| Q |
79 |
tttgtactaattaacatattgcagaacaatagcgattagttcaaatt |
125 |
Q |
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||||||||||||| ||||| ||||||||||||| ||| ||||||||| |
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| T |
55314542 |
tttgtactaattagcatatcgcagaacaatagcaatttgttcaaatt |
55314496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 2732984 - 2732936
Alignment:
| Q |
77 |
attttgtactaattaacatattgcagaacaatagcgattagttcaaatt |
125 |
Q |
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|||||||||||| || ||||| ||| ||||||||||||| ||||||||| |
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| T |
2732984 |
attttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt |
2732936 |
T |
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