View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2291_high_1 (Length: 426)
Name: NF2291_high_1
Description: NF2291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2291_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 409
Target Start/End: Complemental strand, 26370124 - 26369726
Alignment:
| Q |
11 |
taatactgtaccttaactatatatgtcatgatcaaggattgaaacttataaggcttagaaatccttcttgtatattcaaacatagacttgttacatgtct |
110 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26370124 |
taatactataccttaactatatatgtcatgatcaaaaattgaaacttataaagcttagaaatccttcttgtatattcaaacatagacttgttacatatct |
26370025 |
T |
|
| Q |
111 |
attttgtttagcacacttttacttctttctctaataatttgtgtggaaattatattgcagccaactataaaatacccaaatctatttccaaaggattcct |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26370024 |
attttgtttagcacacttttacttctttctctaataatttgtgtgaaaattatattgcagccaactataaaatacccaaatctatttccaaaggattcct |
26369925 |
T |
|
| Q |
211 |
tttgggacaagtaagtgaatttatcttgatttttagtttcataaaattttgaaaatttagttttttcttccaagcgtatcgttgatattctgattgtcat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26369924 |
tttgggacaagtaagtgaatttatcttgatttttagtttcataaaattttgacaatttagttttttcttccaagcgtatcgttgatattctgattgtcat |
26369825 |
T |
|
| Q |
311 |
taccaaaacataaatcttattgcaggtttccatatttcttgccttccatttcaatatcagcttttgcgtttgcggtagcaattgcttgcatctggcttc |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26369824 |
taccaaaacataaatcttattgcaggtttccatatttcttgccttccatttcaatatcagcttttgcgtttgcggtagcaattgcctgcatctggcttc |
26369726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 16528596 - 16528564
Alignment:
| Q |
195 |
tttccaaaggattccttttgggacaagtaagtg |
227 |
Q |
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| T |
16528596 |
tttccaaaggattccttttgggacaagtaagtg |
16528564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 16570043 - 16570011
Alignment:
| Q |
195 |
tttccaaaggattccttttgggacaagtaagtg |
227 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
16570043 |
tttccaaaggattccttttgggacaagtaagtg |
16570011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 12 - 409
Target Start/End: Original strand, 2607125 - 2607511
Alignment:
| Q |
12 |
aatactgtaccttaactatatatgtcatgatcaaggattgaaacttataagg-cttagaaatccttcttgtatattcaaacatagacttgttacatgtct |
110 |
Q |
| |
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|||||| ||||||| | |||||||| ||||||| | |||| |||| |||| |||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
2607125 |
aatactataccttagccatatatgtgatgatcatgaattggaactgataaacacttagaaatccttcttgtatattcaaacatggacttgttagatgtct |
2607224 |
T |
|
| Q |
111 |
attttgtttagcacacttttacttctttctctaataatttgtgtggaaattatattgcagccaactataaaatacccaaatctatttccaaaggattcct |
210 |
Q |
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||| | |||| ||||||||||||| |||||||||||||||||||| || ||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2607225 |
attat-tttaacacacttttacttgtttctctaataatttgtgtgaaatttatatttcagccaactgtaaaatacccaaatctatttccaaaggattcct |
2607323 |
T |
|
| Q |
211 |
tttgggacaagtaagtgaatt----tatcttgatttttagtttcataaaattttgaaaatttagttttttcttccaagcgtatcgttgatattctgattg |
306 |
Q |
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| ||||||||||||| ||||| ||||||||||||| ||||| ||||||||||| |||||| |||||||||||||| || |||| |
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| T |
2607324 |
tctgggacaagtaagcgaatttatatatcttgatttttggtttcgtaaaattttgacaatttaattttttcttccaag---------------ctcattg |
2607408 |
T |
|
| Q |
307 |
tcattaccaaaacataaatcttattgcaggtttccatatttcttgccttccatttcaatatcagcttttgcgtttgcggtagcaattgcttgcatctggc |
406 |
Q |
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||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
2607409 |
tcattttcaaaacatatatcttgtcgcaggtttccatatttcttgccttccatttcgatatcagcttttgcgtttgtggtagcaattgcctgcatctggc |
2607508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 2622063 - 2622115
Alignment:
| Q |
180 |
aaatacccaaatctatttccaaaggattccttttgggacaagtaagtgaattt |
232 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
2622063 |
aaatatccaaatatatttccaaaggattccttttgggacaagtaagtggattt |
2622115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 401
Target Start/End: Original strand, 39161640 - 39161709
Alignment:
| Q |
332 |
gcaggtttccatatttcttgccttccatttcaatatcagcttttgcgtttgcggtagcaattgcttgcat |
401 |
Q |
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|||||||||||||||| ||||| | | || |||||||||||||| ||||| ||||||||||| ||||| |
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| T |
39161640 |
gcaggtttccatattttttgccctgctttgttatatcagcttttgcatttgcagtagcaattgcctgcat |
39161709 |
T |
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