View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2291_high_3 (Length: 347)
Name: NF2291_high_3
Description: NF2291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2291_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 4 - 329
Target Start/End: Complemental strand, 54987813 - 54987490
Alignment:
| Q |
4 |
atgtcgaagaaaatttcatattcctaaacaccatagatactgtttaaatgattgaagaccaactctgcaccaaccactgggacccaaaagccaattccag |
103 |
Q |
| |
|
||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
54987813 |
atgtcaaagaaaatttcatattcttaa-caccatagatactgtttaaatgattgaagaccaactctgcaccaaccaccgggacccaaaagccaattccag |
54987715 |
T |
|
| Q |
104 |
tactaatatttcaccaaaatttatttcacccaaaggaaatgtatgattgcaccgaaatttcaaaaaactgctcacctacgcaaattcactactaatgtta |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54987714 |
tactaatatttcaccaaaatttatttcacccaaaggaaatgtatgattgcaccgaaatttcaaaaaactgctcacctacgcaaattcactactaatgtta |
54987615 |
T |
|
| Q |
204 |
gtggataacgttgtcaaacaaagttatattttattttgttcattttagctttctcttactttatccttttccactaattatacttgctgttcgttcatca |
303 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
54987614 |
gtggataacg-tgtcaaacaaagttatattttattttgttcattttagctttctcttactttatccttttccactaattatacttgctgttcattcatca |
54987516 |
T |
|
| Q |
304 |
aactttttcggagagtagttaagaaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
54987515 |
aactttttcggagagtagttaagaaa |
54987490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University