View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2291_high_7 (Length: 249)
Name: NF2291_high_7
Description: NF2291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2291_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 8005095 - 8004869
Alignment:
| Q |
1 |
tttctctttcttgggaccaccaattgaaatagttgatctgtgtcaacaatctcatctattttatccatgttagtcatgaatcactcagaaaattcatagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8005095 |
tttctctttcttgggaccaccaattgaaatagttgatctgtgtcaacaatctcatctattttatccatgttagtcatgaatcaatcagaaaattcatagt |
8004996 |
T |
|
| Q |
101 |
ttgttggacatcagtagaaacaagctctaaaacttacatgccataattaatattagcactaaagtttgacagattagagtctgtcacaacaacgaaacta |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8004995 |
ttgttggacattggtagaaacaagctctaaaacttacatgccataattaacattagcactaaagtttgatagattagagtctgtcacaacaacgaaacta |
8004896 |
T |
|
| Q |
201 |
ttagttcttaattcctagtcaaattca |
227 |
Q |
| |
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||||||||||||||||||| ||||||| |
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| T |
8004895 |
ttagttcttaattcctagttaaattca |
8004869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 8121156 - 8121279
Alignment:
| Q |
65 |
ccatgttagtc-atgaatcactcagaaaattcatagtttgttggacatcagtagaaacaagctctaaaacttacatgccataattaatattagcactaaa |
163 |
Q |
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||||||||||| ||||||| |||||||||| ||| ||||||| | | |||||| | ||||| ||||||||| ||| ||| | ||| ||| ||||||| |
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| T |
8121156 |
ccatgttagtccatgaatcgctcagaaaatccatggtttgtttggccacagtaggagcaagccctaaaacttttatgtcatgaataacattttcactaaa |
8121255 |
T |
|
| Q |
164 |
gtttgacagattagagtctgtcac |
187 |
Q |
| |
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|||||||| ||||||||||||||| |
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| T |
8121256 |
gtttgacatattagagtctgtcac |
8121279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 185
Target Start/End: Original strand, 19566076 - 19566186
Alignment:
| Q |
75 |
catgaatcactcagaaaattcatagtttgttggacatcagtagaaacaagctctaaaacttacatgccataattaatattagcactaaagtttgacagat |
174 |
Q |
| |
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||||||||||||||||||| |||||||||||| | |||||| ||| ||| ||||||||| |||| ||| | ||| ||| ||||||||| ||||| | |
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| T |
19566076 |
catgaatcactcagaaaatccatagtttgttgagccacagtaggaaccagccctaaaacttgcatgtcatgaataacattttcactaaagtgtgacaagt |
19566175 |
T |
|
| Q |
175 |
tagagtctgtc |
185 |
Q |
| |
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||||||||||| |
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| T |
19566176 |
tagagtctgtc |
19566186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 185
Target Start/End: Complemental strand, 6827436 - 6827326
Alignment:
| Q |
75 |
catgaatcactcagaaaattcatagtttgttggacatcagtagaaacaagctctaaaacttacatgccataattaatattagcactaaagtttgacagat |
174 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||||| | |||||| |||||| ||||||||| |||| ||| | ||| ||| ||||||||||||||| | |
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| T |
6827436 |
catgaatcgctcaaaaaatccatagtttgttgggccacagtaggaacaagtcctaaaacttgcatgtcatgaataacattttcactaaagtttgacaagt |
6827337 |
T |
|
| Q |
175 |
tagagtctgtc |
185 |
Q |
| |
|
||||||||||| |
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|
| T |
6827336 |
tagagtctgtc |
6827326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 55104039 - 55104148
Alignment:
| Q |
75 |
catgaatcactcagaaaattcatagtttgttggacatcagtagaaacaagctctaaaacttacatgccataattaatattagcactaaagtttgacagat |
174 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | |||||| ||| ||| ||||||||| |||| ||| | ||| ||| ||||||||| ||||| | |
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|
| T |
55104039 |
catgaatcactcagaaaatccatagtttgttgagccacagtaggaaccagccctaaaacttgcatgtcatgaataacattttcactaaagtgtgacaagt |
55104138 |
T |
|
| Q |
175 |
tagagtctgt |
184 |
Q |
| |
|
|||||||||| |
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|
| T |
55104139 |
tagagtctgt |
55104148 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 38251953 - 38251878
Alignment:
| Q |
152 |
attagcactaaagtttgacagattagagtctgtcacaacaacgaaactattagttcttaattcctagtcaaattca |
227 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| | | |||||| ||||| ||||||| ||||||||| |
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|
| T |
38251953 |
attagcactaaagtttgacaagttagagtctgtcacaactatggaactatcagttcccaattcctgctcaaattca |
38251878 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 39279604 - 39279663
Alignment:
| Q |
123 |
agctctaaaacttacatgccataattaatattagcactaaagtttgacagattagagtct |
182 |
Q |
| |
|
||||||||||||| |||| ||| | ||||||| |||||||||||||||| ||||||||| |
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| T |
39279604 |
agctctaaaacttgcatgtcatgaataatatttgcactaaagtttgacaagttagagtct |
39279663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 185
Target Start/End: Original strand, 19599111 - 19599221
Alignment:
| Q |
75 |
catgaatcactcagaaaattcatagtttgttggacatcagtagaaacaagctctaaaacttacatgccataattaatattagcactaaagtttgacagat |
174 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | |||||| ||| ||| ||||||||| |||| || | ||| ||| ||||||||| ||||| | |
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|
| T |
19599111 |
catgaatcactcagaaaatccatagtttgttgagccacagtaggaaccagccctaaaacttgcatgttatgaataacattttcactaaagtgtgacaagt |
19599210 |
T |
|
| Q |
175 |
tagagtctgtc |
185 |
Q |
| |
|
|||||| |||| |
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|
| T |
19599211 |
tagagtatgtc |
19599221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 15324700 - 15324582
Alignment:
| Q |
83 |
actcagaaaattcatagtttgttggacatcagtagaaacaagctctaaaacttacatgccataattaatattagcactaaagtttgacagattagagtct |
182 |
Q |
| |
|
||||||||||| ||||||||||||| | | ||||||| |||| | |||||| |||| | ||| ||| ||| || |||||||||||| ||||||| | |
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|
| T |
15324700 |
actcagaaaatccatagtttgttgggctgcggtagaaataagccttgaaacttgcatgtcgtaaataacatttacaataaagtttgacatgttagagtat |
15324601 |
T |
|
| Q |
183 |
gtcacaacaacgaaactat |
201 |
Q |
| |
|
|||||||| | |||||||| |
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|
| T |
15324600 |
gtcacaactatgaaactat |
15324582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 28635755 - 28635653
Alignment:
| Q |
81 |
tcactcagaaaattcatagtttgttggacatcagtagaaacaagctctaaaacttacatgccataattaatattagcactaaagtttgacagattagagt |
180 |
Q |
| |
|
||||||| ||||| ||||||||||||| | || || |||||| ||||||||| ||| ||| | ||| ||| |||||||||||||||| |||||||| |
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|
| T |
28635755 |
tcactcaaaaaatccatagtttgttgggccacataaggaacaagtcctaaaacttgcatatcatgaataacatttgcactaaagtttgacaaattagagt |
28635656 |
T |
|
| Q |
181 |
ctg |
183 |
Q |
| |
|
||| |
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|
| T |
28635655 |
ctg |
28635653 |
T |
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