View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2291_low_2 (Length: 417)
Name: NF2291_low_2
Description: NF2291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2291_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 14 - 399
Target Start/End: Complemental strand, 28988398 - 28988013
Alignment:
| Q |
14 |
aaattaacgaaatttcaataaagctccaaaataaaaaaggaagataagaataaaggagcatatacatatatgtgatgtaattattcattagttatatata |
113 |
Q |
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| T |
28988398 |
aaattaacgaaatttcaataaagctccaaaataaaaaaggaagataagaataaaggagcatatacatatatgtgatgtaattattcattagttatatata |
28988299 |
T |
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| Q |
114 |
tcaagagaggtcaagacaaaagtaaaatagagtcatgaatttgatacaattgtatgcataaggttagattaaaatcacttatctcaatttaacgtccggc |
213 |
Q |
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| T |
28988298 |
tcaagagaggtcaagacaaaagtaaaatagggtcatgaatttgatacaattgtatgtataaggttagattaaaatcacttatctcaatttaacgtccggc |
28988199 |
T |
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| Q |
214 |
agtcggatgtaccataaagttgagtggatcgaaatgatccactcaaaattacttagctgcatgaacaagaggattttcattgacataattacccgctgga |
313 |
Q |
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| T |
28988198 |
agtcgaatgtaccataaagttgagtggatcgaaatgatccactcaaaattacttagctgcatgaacaagaggattctcattgacataattacccgctgga |
28988099 |
T |
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| Q |
314 |
ttatactcgcacgcgatgagcatgccagtaccgttgttcttgcaatgctgcaaggcacatccaacatgcgtcgaatccctccacac |
399 |
Q |
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| T |
28988098 |
ttatactcgcacgcgatgagcatgccagtaccgttgttcttgcaatgttgcaaggcacatccaacatgcgtcgaatccctccacac |
28988013 |
T |
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