View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2291_low_5 (Length: 334)

Name: NF2291_low_5
Description: NF2291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2291_low_5
NF2291_low_5
[»] chr4 (1 HSPs)
chr4 (18-321)||(342888-343178)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 343178 - 342888
Alignment:
Q  18 ttgaacacactaaaggctaaaatgatatagacatttttgttaatgatgaacttgaagcaatattggggaagaaatgattgacatcaccattgatgcaaca 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||    
T  343178 ttgaacacactaaaggctaaaatgatatagatatttttgttaatgatgaacttgaagcaatattggggaaga---------catcaccattgatgcaaca 343088  T
Q  118 aaagttcctaattaatgatgaaatagtacttttcgtggatcaagttgaccactacaataacttgaaggaactgcagatatttcttgtcttcctttccact 217  Q
    ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  343087 aaagttcctaat----gatgaaatagtacttttcgtggatcaagttgaccactacaataacttgaaggaactgcagatatttcttgtcttcctttccact 342992  T
Q  218 cttcaccaggtttgagagtaattgctttttctacacaagcaggttggacacacaacatatgtttgtattcatcatctcccaaatcagatatgatctttga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  342991 cttcaccaggtttgagagtaattgctttttctacacaagcaggttggacacacaacatatgtttgtactcatcatctcccaaatcagatatgatctttga 342892  T

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