View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2291_low_7 (Length: 249)

Name: NF2291_low_7
Description: NF2291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2291_low_7
NF2291_low_7
[»] chr6 (1 HSPs)
chr6 (1-227)||(8004869-8005095)
[»] chr8 (1 HSPs)
chr8 (65-187)||(8121156-8121279)
[»] chr7 (1 HSPs)
chr7 (75-185)||(19566076-19566186)
[»] chr5 (1 HSPs)
chr5 (75-185)||(6827326-6827436)
[»] chr4 (4 HSPs)
chr4 (75-184)||(55104039-55104148)
chr4 (152-227)||(38251878-38251953)
chr4 (123-182)||(39279604-39279663)
chr4 (75-185)||(19599111-19599221)
[»] chr2 (2 HSPs)
chr2 (83-201)||(15324582-15324700)
chr2 (81-183)||(28635653-28635755)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 8005095 - 8004869
Alignment:
Q  1 tttctctttcttgggaccaccaattgaaatagttgatctgtgtcaacaatctcatctattttatccatgttagtcatgaatcactcagaaaattcatagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8005095 tttctctttcttgggaccaccaattgaaatagttgatctgtgtcaacaatctcatctattttatccatgttagtcatgaatcaatcagaaaattcatagt 8004996  T
Q  101 ttgttggacatcagtagaaacaagctctaaaacttacatgccataattaatattagcactaaagtttgacagattagagtctgtcacaacaacgaaacta 200  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8004995 ttgttggacattggtagaaacaagctctaaaacttacatgccataattaacattagcactaaagtttgatagattagagtctgtcacaacaacgaaacta 8004896  T
Q  201 ttagttcttaattcctagtcaaattca 227  Q
    ||||||||||||||||||| |||||||    
T  8004895 ttagttcttaattcctagttaaattca 8004869  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 8121156 - 8121279
Alignment:
Q  65 ccatgttagtc-atgaatcactcagaaaattcatagtttgttggacatcagtagaaacaagctctaaaacttacatgccataattaatattagcactaaa 163  Q
    ||||||||||| ||||||| |||||||||| ||| ||||||| | |  |||||| | ||||| |||||||||  ||| ||| | ||| |||  |||||||    
T  8121156 ccatgttagtccatgaatcgctcagaaaatccatggtttgtttggccacagtaggagcaagccctaaaacttttatgtcatgaataacattttcactaaa 8121255  T
Q  164 gtttgacagattagagtctgtcac 187  Q
    |||||||| |||||||||||||||    
T  8121256 gtttgacatattagagtctgtcac 8121279  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 185
Target Start/End: Original strand, 19566076 - 19566186
Alignment:
Q  75 catgaatcactcagaaaattcatagtttgttggacatcagtagaaacaagctctaaaacttacatgccataattaatattagcactaaagtttgacagat 174  Q
    ||||||||||||||||||| ||||||||||||  |  |||||| ||| ||| ||||||||| |||| ||| | ||| |||  ||||||||| |||||  |    
T  19566076 catgaatcactcagaaaatccatagtttgttgagccacagtaggaaccagccctaaaacttgcatgtcatgaataacattttcactaaagtgtgacaagt 19566175  T
Q  175 tagagtctgtc 185  Q
    |||||||||||    
T  19566176 tagagtctgtc 19566186  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 185
Target Start/End: Complemental strand, 6827436 - 6827326
Alignment:
Q  75 catgaatcactcagaaaattcatagtttgttggacatcagtagaaacaagctctaaaacttacatgccataattaatattagcactaaagtttgacagat 174  Q
    |||||||| |||| ||||| ||||||||||||| |  |||||| ||||||  ||||||||| |||| ||| | ||| |||  |||||||||||||||  |    
T  6827436 catgaatcgctcaaaaaatccatagtttgttgggccacagtaggaacaagtcctaaaacttgcatgtcatgaataacattttcactaaagtttgacaagt 6827337  T
Q  175 tagagtctgtc 185  Q
    |||||||||||    
T  6827336 tagagtctgtc 6827326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 55104039 - 55104148
Alignment:
Q  75 catgaatcactcagaaaattcatagtttgttggacatcagtagaaacaagctctaaaacttacatgccataattaatattagcactaaagtttgacagat 174  Q
    ||||||||||||||||||| ||||||||||||  |  |||||| ||| ||| ||||||||| |||| ||| | ||| |||  ||||||||| |||||  |    
T  55104039 catgaatcactcagaaaatccatagtttgttgagccacagtaggaaccagccctaaaacttgcatgtcatgaataacattttcactaaagtgtgacaagt 55104138  T
Q  175 tagagtctgt 184  Q
    ||||||||||    
T  55104139 tagagtctgt 55104148  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 38251953 - 38251878
Alignment:
Q  152 attagcactaaagtttgacagattagagtctgtcacaacaacgaaactattagttcttaattcctagtcaaattca 227  Q
    ||||||||||||||||||||  ||||||||||||||||| | | |||||| |||||  |||||||  |||||||||    
T  38251953 attagcactaaagtttgacaagttagagtctgtcacaactatggaactatcagttcccaattcctgctcaaattca 38251878  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 39279604 - 39279663
Alignment:
Q  123 agctctaaaacttacatgccataattaatattagcactaaagtttgacagattagagtct 182  Q
    ||||||||||||| |||| ||| | ||||||| ||||||||||||||||  |||||||||    
T  39279604 agctctaaaacttgcatgtcatgaataatatttgcactaaagtttgacaagttagagtct 39279663  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 185
Target Start/End: Original strand, 19599111 - 19599221
Alignment:
Q  75 catgaatcactcagaaaattcatagtttgttggacatcagtagaaacaagctctaaaacttacatgccataattaatattagcactaaagtttgacagat 174  Q
    ||||||||||||||||||| ||||||||||||  |  |||||| ||| ||| ||||||||| ||||  || | ||| |||  ||||||||| |||||  |    
T  19599111 catgaatcactcagaaaatccatagtttgttgagccacagtaggaaccagccctaaaacttgcatgttatgaataacattttcactaaagtgtgacaagt 19599210  T
Q  175 tagagtctgtc 185  Q
    |||||| ||||    
T  19599211 tagagtatgtc 19599221  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 15324700 - 15324582
Alignment:
Q  83 actcagaaaattcatagtttgttggacatcagtagaaacaagctctaaaacttacatgccataattaatattagcactaaagtttgacagattagagtct 182  Q
    ||||||||||| ||||||||||||| |  | ||||||| ||||  | |||||| |||| | ||| ||| |||  || ||||||||||||  ||||||| |    
T  15324700 actcagaaaatccatagtttgttgggctgcggtagaaataagccttgaaacttgcatgtcgtaaataacatttacaataaagtttgacatgttagagtat 15324601  T
Q  183 gtcacaacaacgaaactat 201  Q
    |||||||| | ||||||||    
T  15324600 gtcacaactatgaaactat 15324582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 28635755 - 28635653
Alignment:
Q  81 tcactcagaaaattcatagtttgttggacatcagtagaaacaagctctaaaacttacatgccataattaatattagcactaaagtttgacagattagagt 180  Q
    ||||||| ||||| ||||||||||||| |  ||  || ||||||  ||||||||| |||  ||| | ||| ||| |||||||||||||||| ||||||||    
T  28635755 tcactcaaaaaatccatagtttgttgggccacataaggaacaagtcctaaaacttgcatatcatgaataacatttgcactaaagtttgacaaattagagt 28635656  T
Q  181 ctg 183  Q
    |||    
T  28635655 ctg 28635653  T

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