View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2292_high_7 (Length: 434)
Name: NF2292_high_7
Description: NF2292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2292_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 282
Target Start/End: Complemental strand, 32990649 - 32990397
Alignment:
| Q |
30 |
attctgtgggtgaaagccatgaatcaggattgaactgcctgatttactttgaatacatgtccaaccaagggactgttgcacaaaagtgtaaacaacaatc |
129 |
Q |
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| T |
32990649 |
attctatgggtgaaagccatgaatcaggattgaactgcctggtttactttgaatacatgtccaaccaagggactgttgcacaaaagtgtaaacaacaatc |
32990550 |
T |
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| Q |
130 |
annnnnnnnnagtcatgtgttgtgtggggacgaatctaaaccactaaaatcaataaataaatataatacaattcacttgcaaagtagcagttaattaaat |
229 |
Q |
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| T |
32990549 |
atttttttttagtcatgtgttgtgtggggacgaatctaatccactaaaatcaataaataaatataatacaattcacttgcaaagtagcagttaattaaat |
32990450 |
T |
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| Q |
230 |
caatttgaatacctttctgtatatcttggtcacgtctctctccataatccaat |
282 |
Q |
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| T |
32990449 |
caatttgaagacctttctgtatatcttggtcacgtctctctccataatccaat |
32990397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 310 - 419
Target Start/End: Complemental strand, 32990373 - 32990264
Alignment:
| Q |
310 |
tccctcattcactccatcattacccgctcaaaatcaattcacctcttccatatccaaaaatcaactactctcattcatcactactattacctcatcactc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32990373 |
tccctcattcactccatcattacccgctcaaaatcaattcacctcttccatatccaaaaatcaactactctcattcatcactactattacctcatcactc |
32990274 |
T |
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| Q |
410 |
atcaaccaat |
419 |
Q |
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| T |
32990273 |
atcaaccaat |
32990264 |
T |
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