View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2292_high_8 (Length: 387)

Name: NF2292_high_8
Description: NF2292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2292_high_8
NF2292_high_8
[»] chr1 (1 HSPs)
chr1 (87-376)||(27867669-27867959)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 87 - 376
Target Start/End: Original strand, 27867669 - 27867959
Alignment:
Q  87 gcaaataaaatgttatttataataccattccttcaataaaaatgttctgataaacattttattgagttagatgaatcatcgagactgttttgaattggta 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27867669 gcaaataaaatgttatttataataccattccttcaataaaaatgttctgataaacattttattgagttagatgaatcatcgagactgttttgaattggta 27867768  T
Q  187 ttatgtttaattgtttttgaagtgaataattttaaaataatgagactgatcttgagggtaaaaataaaatttagttttaaaatgtctcttctcctcatgt 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||    
T  27867769 ttatgtttaattgtttttgaagtgaataattttaaaataatgagactgatcttgagggtaaaaatataatttagttttaaaatatctctcctcctcatgt 27867868  T
Q  287 gaaccaaacataaaattgaatt-aaaatttattctcttccctctatactcttttcaatcaaacatatgtttaaatctcatattctcccttt 376  Q
    |||||||||||||||||||||| ||||| |||||||| |||||||||||||||| |||||||||||||||||| |||| ||||||||||||    
T  27867869 gaaccaaacataaaattgaattaaaaatctattctctcccctctatactcttttgaatcaaacatatgtttaactctcctattctcccttt 27867959  T

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