View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2292_low_11 (Length: 441)

Name: NF2292_low_11
Description: NF2292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2292_low_11
NF2292_low_11
[»] chr3 (21 HSPs)
chr3 (115-433)||(39299580-39299903)
chr3 (81-227)||(51336177-51336319)
chr3 (82-208)||(10839399-10839522)
chr3 (97-208)||(19649406-19649515)
chr3 (81-210)||(48206838-48206963)
chr3 (82-228)||(1781728-1781871)
chr3 (82-251)||(6280378-6280543)
chr3 (99-228)||(33103710-33103835)
chr3 (97-150)||(3178744-3178797)
chr3 (97-242)||(54546857-54546998)
chr3 (83-228)||(8926733-8926874)
chr3 (81-212)||(19644345-19644474)
chr3 (82-227)||(43347355-43347495)
chr3 (97-212)||(5391441-5391551)
chr3 (97-139)||(13856151-13856193)
chr3 (1-50)||(39299912-39299961)
chr3 (87-140)||(39352245-39352298)
chr3 (97-139)||(8950538-8950580)
chr3 (82-139)||(22845381-22845438)
chr3 (99-213)||(36539613-36539724)
chr3 (97-145)||(47889772-47889820)
[»] chr6 (5 HSPs)
chr6 (82-227)||(28750669-28750811)
chr6 (82-139)||(27863751-27863808)
chr6 (81-171)||(13103136-13103223)
chr6 (82-243)||(34103638-34103794)
chr6 (97-139)||(14309832-14309874)
[»] chr2 (9 HSPs)
chr2 (82-208)||(41674725-41674849)
chr2 (82-245)||(28321722-28321882)
chr2 (99-199)||(23685406-23685503)
chr2 (97-212)||(33009654-33009767)
chr2 (82-243)||(14539723-14539881)
chr2 (97-212)||(6318492-6318605)
chr2 (97-139)||(29846494-29846536)
chr2 (99-169)||(25665249-25665316)
chr2 (99-139)||(40277324-40277364)
[»] chr4 (13 HSPs)
chr4 (85-245)||(50328745-50328902)
chr4 (98-244)||(322584-322727)
chr4 (81-199)||(35322722-35322837)
chr4 (97-208)||(11054439-11054550)
chr4 (82-208)||(12792250-12792373)
chr4 (99-145)||(5780790-5780836)
chr4 (82-139)||(47084064-47084121)
chr4 (82-199)||(17888569-17888683)
chr4 (97-139)||(16338247-16338289)
chr4 (97-139)||(52632570-52632612)
chr4 (82-139)||(9742552-9742609)
chr4 (82-127)||(10094412-10094457)
chr4 (82-180)||(19124757-19124852)
[»] chr5 (11 HSPs)
chr5 (82-228)||(42119588-42119731)
chr5 (82-228)||(11856261-11856404)
chr5 (82-211)||(36769093-36769218)
chr5 (82-145)||(29790238-29790301)
chr5 (82-145)||(15475413-15475476)
chr5 (97-237)||(33271304-33271440)
chr5 (97-139)||(9738017-9738059)
chr5 (99-199)||(25560363-25560460)
chr5 (97-243)||(8456997-8457140)
chr5 (82-139)||(614411-614468)
chr5 (82-208)||(29491433-29491554)
[»] chr1 (16 HSPs)
chr1 (81-171)||(30745367-30745454)
chr1 (81-171)||(30766818-30766905)
chr1 (81-228)||(44462496-44462641)
chr1 (82-203)||(26835329-26835447)
chr1 (147-212)||(44107469-44107534)
chr1 (82-134)||(37189697-37189749)
chr1 (98-228)||(5558276-5558402)
chr1 (97-139)||(23908337-23908379)
chr1 (82-213)||(10907667-10907794)
chr1 (82-139)||(13131948-13132005)
chr1 (147-210)||(45968652-45968715)
chr1 (97-139)||(3346838-3346880)
chr1 (97-139)||(10156050-10156092)
chr1 (82-140)||(42456623-42456681)
chr1 (148-208)||(1106762-1106822)
chr1 (82-196)||(38859849-38859960)
[»] chr8 (6 HSPs)
chr8 (81-228)||(10112013-10112157)
chr8 (105-249)||(34697431-34697572)
chr8 (163-237)||(16591440-16591514)
chr8 (82-137)||(16591394-16591449)
chr8 (97-139)||(21525410-21525452)
chr8 (97-139)||(42072480-42072522)
[»] chr7 (9 HSPs)
chr7 (82-242)||(10334130-10334287)
chr7 (82-227)||(17303133-17303276)
chr7 (97-212)||(19334594-19334706)
chr7 (82-139)||(15017825-15017882)
chr7 (97-208)||(33057691-33057798)
chr7 (97-139)||(29555973-29556015)
chr7 (97-139)||(29981147-29981189)
chr7 (97-139)||(32876564-32876606)
chr7 (85-139)||(44164765-44164819)
[»] scaffold0086 (1 HSPs)
scaffold0086 (82-139)||(20850-20907)
[»] scaffold0045 (1 HSPs)
scaffold0045 (82-227)||(34471-34612)
[»] scaffold0079 (1 HSPs)
scaffold0079 (97-139)||(54571-54613)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 115 - 433
Target Start/End: Complemental strand, 39299903 - 39299580
Alignment:
Q  115 ctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatcctgataaatgtgttgcaaatttattttgcccat 214  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||| |||||||||||| ||||| ||||    
T  39299903 ctttataaattggacaatttctttaatttttattttaattgtttacgtgcaatttctcatgtaaaccctgataaatatgttgcaaatttgttttgtccat 39299804  T
Q  215 gttttataataatcgtgtctccggcactgctcacatggagggaaataaatgagagagatggcaattcaagatcattctcttt--------ccactccatc 306  Q
    |||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||        ||||||| ||    
T  39299803 gttttataataatcctgcctccgccactgctcacatggaggggaataaatgagagagattgcaattcaagatcattctctttccacacttccactccgtc 39299704  T
Q  307 acattcctctttctataattttgtagtatcctttcctttttaattttgtattcttaaaatttcacactctctcctcaacgagccgactctacttttctat 406  Q
    |||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| ||  |||||| || ||||| ||| ||||||||||||||||    
T  39299703 acattcctctttctataa-tttgtagtatcctttcctttctagttttgtattcttaaaaatt--cactctttcttcaacaagctgactctacttttctat 39299607  T
Q  407 ctagataatttctcctccatattcttc 433  Q
    |||||||||||||| ||||| ||||||    
T  39299606 ctagataatttctcttccattttcttc 39299580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 81 - 227
Target Start/End: Complemental strand, 51336319 - 51336177
Alignment:
Q  81 tttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaa- 179  Q
    ||||||||||||   |||||||| ||||||||||||||||||||| |||||||||||||| |    |||| ||| |||||||||||||||| |  ||||     
T  51336319 tttatgtaaattctcctgaattttttatataaatctttataaatttgacaatttctttaaat----tttttattatttacttgcaatttcttacgtaaac 51336224  T
Q  180 tcctgataaatgtgttgcaaatttattttgcccatgttttataataat 227  Q
    | || |||||||||||| |||||| |||||||||  ||||||||||||    
T  51336223 ttct-ataaatgtgttgtaaattttttttgcccaaattttataataat 51336177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 82 - 208
Target Start/End: Original strand, 10839399 - 10839522
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatc 181  Q
    |||||||||||| ||||||||||||||||||| || |||||||||| |||||||||||  ||   |||||||| ||| |||||||||||| || ||||      
T  10839399 ttatgtaaatttctctgaatttcttatataaacctctataaattgggcaatttctttagatt---ttttgattatttgcttgcaatttcttatgtaaaca 10839495  T
Q  182 ctgataaatgtgttgcaaatttatttt 208  Q
    |  ||| ||||||||||||||| ||||    
T  10839496 cctatacatgtgttgcaaatttttttt 10839522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 19649406 - 19649515
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatcctgataaatgtgttg 196  Q
    ||||||||||||||||| | |||||||||||||||||||||||  |||  ||| |||| ||| |||||||||||| || ||| |||  ||||||||||||    
T  19649406 tgaatttcttatataaacccttataaattggacaatttctttagattt--tttggattatttgcttgcaatttcttatgtaattccctataaatgtgttg 19649503  T
Q  197 caaatttatttt 208  Q
    ||| ||| ||||    
T  19649504 caattttttttt 19649515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 48206963 - 48206838
Alignment:
Q  81 tttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaat 180  Q
    ||||||||||||  |||||||| |||||||||| |  |||||||| |||||||| ||||  ||||   |||||| |||||||||||||||| || ||||     
T  48206963 tttatgtaaattcctctgaatt-cttatataaacccctataaatttgacaatttttttagatttt---ttgattatttacttgcaatttcttatgtaaac 48206868  T
Q  181 cctgataaatgtgttgcaaatttattttgc 210  Q
     || ||||||||||||||||||| ||||||    
T  48206867 acttataaatgtgttgcaaatttcttttgc 48206838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 1781871 - 1781728
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatc 181  Q
    ||||||||||   ||||||||||||||||||| |   ||||||||| |||||||||||  ||||   |||||| ||| |||||||||||  || |||| |    
T  1781871 ttatgtaaatccctctgaatttcttatataaaccccaataaattgggcaatttctttagatttt---ttgattatttgcttgcaatttcgtatgtaaacc 1781775  T
Q  182 ctgataaatgtgttgcaaatttattttgcccatgttttataataatc 228  Q
    |  ||||||||||||||| ||| |||||||||   ||||||||||||    
T  1781774 cctataaatgtgttgcaatttttttttgcccagactttataataatc 1781728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 251
Target Start/End: Original strand, 6280378 - 6280543
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatc 181  Q
    ||||||||||||  |||||||||||||||||| || |||||||| |||||||| ||||  |    |||||||  ||| ||||| |||| | || |||| |    
T  6280378 ttatgtaaatttccctgaatttcttatataaacctctataaatttgacaatttatttagat----ttttgataatttgcttgccattttttatgtaaacc 6280473  T
Q  182 ctgataaatgtgttgcaaatttattttgcccatgttttataataatcgtgtctccggcactgctcacatg 251  Q
     | ||||||||||||||||||| ||||| |||   |||||||||||| || ||||| ||||  |||||||    
T  6280474 tttataaatgtgttgcaaattttttttgtccagactttataataatcctggctccgccacttatcacatg 6280543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 228
Target Start/End: Complemental strand, 33103835 - 33103710
Alignment:
Q  99 aatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatcctgataaatgtgttgca 198  Q
    |||||||||||||| ||  ||||||||||| ||||| ||||| |||| |    ||| ||| |||| ||||||| || |||||||| ||||||||||||||    
T  33103835 aatttcttatataagtccctataaattggataatttatttaaatttttt----attatttgcttgtaatttcttatgtaaatccttataaatgtgttgca 33103740  T
Q  199 aatttattttgcccatgttttataataatc 228  Q
    ||||| |||| ||||   ||||||||||||    
T  33103739 aattttttttacccaaactttataataatc 33103710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 3178797 - 3178744
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttctttaatttttatttt 150  Q
    |||||||||||||||||||| |||||||||| ||||||||||| ||||| ||||    
T  3178797 tgaatttcttatataaatctctataaattgggcaatttctttagtttttttttt 3178744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 242
Target Start/End: Complemental strand, 54546998 - 54546857
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatcctgataaatgtgttg 196  Q
    ||||||||||||||||| |  ||||||||||||||||||||||  |    |||||||| ||| ||| |||||||| || |||||||  |||||||||||     
T  54546998 tgaatttcttatataaacccctataaattggacaatttctttagat----ttttgattatttgcttacaatttcttatgtaaatccctataaatgtgtta 54546903  T
Q  197 caaatttattttgcccatgttttataataatcgtgtctccggcact 242  Q
    ||| ||| ||||  |||   |||||||||||| || ||||| ||||    
T  54546902 caattttttttttaccagactttataataatcctggctccgccact 54546857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 228
Target Start/End: Complemental strand, 8926874 - 8926733
Alignment:
Q  83 tatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatcc 182  Q
    ||||||||||  ||||||||||| ||||||| |  |||||||| | |||||||| ||  ||   |||||||| ||| |||||||||||| || | || ||    
T  8926874 tatgtaaattcctctgaatttctgatataaacccctataaatttggcaatttctgtagatt---ttttgattatttgcttgcaatttcttatgttaaccc 8926778  T
Q  183 tgataaatgtgttgcaaatttattttgcccatgttttataataatc 228  Q
    | |||||||||||||| |||| |||| |||| | ||||||||||||    
T  8926777 ttataaatgtgttgcagattt-tttttcccaagctttataataatc 8926733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 212
Target Start/End: Original strand, 19644345 - 19644474
Alignment:
Q  81 tttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaat 180  Q
    ||||||||||||  | ||||||| |||||||||||||||||||||| ||||||| ||| |  ||| ||| |||| |||  ||||||||||| || ||| |    
T  19644345 tttatgtaaattgctatgaattttttatataaatctttataaattgaacaattttttttagattt-tttggattatttgattgcaatttcttatgtaatt 19644443  T
Q  181 cctgataaatgtgttgcaaatttattttgccc 212  Q
    ||  ||||||||||| | ||||| ||||||||    
T  19644444 ccctataaatgtgttac-aattttttttgccc 19644474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 43347355 - 43347495
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatc 181  Q
    |||||||||||  ||||||||||||||||||| |  || ||||||| |||||||||||  ||   |||||||| ||| |||||||||||| || |||| |    
T  43347355 ttatgtaaattcctctgaatttcttatataaacccctacaaattgggcaatttctttagatt---ttttgattatttgcttgcaatttcttatgtaaacc 43347451  T
Q  182 ctgataaatgtgttgcaaatttattttgcccatgttttataataat 227  Q
    || |||| | |||||| ||||| |||||||||   |||||||||||    
T  43347452 ct-ataattatgttgc-aattttttttgcccaaactttataataat 43347495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 5391551 - 5391441
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatcctgataaatgtgttg 196  Q
    ||||||||||||||||| |  ||||||||||||||||||||||  |    |||| ||| ||| |||||||||||| || ||   ||| ||||||||||||    
T  5391551 tgaatttcttatataaacccctataaattggacaatttctttacat----tttttattatttgcttgcaatttcttatgtacgccct-ataaatgtgttg 5391457  T
Q  197 caaatttattttgccc 212  Q
    ||||||| ||||||||    
T  5391456 caaattttttttgccc 5391441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 13856193 - 13856151
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  13856193 tgaatttcttatataaatccctataaattggacaatttcttta 13856151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 39299961 - 39299912
Alignment:
Q  1 tcgccgaaatggacctcacatgcagtggtggatccaaggcccgacgagct 50  Q
    |||||||||||||| |||||||||||||  ||| ||||||||||||||||    
T  39299961 tcgccgaaatggacttcacatgcagtggcagattcaaggcccgacgagct 39299912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 39352298 - 39352245
Alignment:
Q  87 taaatttatctgaatttcttatataaatctttataaattggacaatttctttaa 140  Q
    ||||||| ||| |||||||||||||||||| ||||||||  |||||||||||||    
T  39352298 taaatttctctaaatttcttatataaatctctataaatttaacaatttctttaa 39352245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 8950538 - 8950580
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    |||||||||||||||||||  |||||||||| |||||||||||    
T  8950538 tgaatttcttatataaatccctataaattgggcaatttcttta 8950580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 22845381 - 22845438
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    ||||||||||| | || ||||||||||||||| |  |||||||| |||||||||||||    
T  22845381 ttatgtaaattcacctaaatttcttatataaacccctataaatttgacaatttcttta 22845438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 36539724 - 36539613
Alignment:
Q  99 aatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatcctgataaatgtgttgca 198  Q
    ||||||||||||||  |  |||||||||| |||||||||||| ||   |||||||| |||  ||||||||||  || |||| ||  ||||||||||||||    
T  36539724 aatttcttatataatcccctataaattgggcaatttctttaaatt---ttttgattatttgtttgcaatttcctatgtaaacccctataaatgtgttgca 36539628  T
Q  199 aatttattttgccca 213  Q
    | ||| ||| |||||    
T  36539627 attttttttcgccca 36539613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 47889820 - 47889772
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttctttaattttt 145  Q
    ||||||||||||||||||   |||||||||| |||||||||||| ||||    
T  47889820 tgaatttcttatataaattcctataaattgggcaatttctttaaatttt 47889772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 28750669 - 28750811
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatc 181  Q
    |||||||||||  ||||||||||||||||||| |  |||||||||| |||||||||||||||   |||||||| ||| |||| ||||||| || ||||      
T  28750669 ttatgtaaattcttctgaatttcttatataaacccctataaattgggcaatttctttaattt---ttttgattatttgcttgtaatttcttatgtaaact 28750765  T
Q  182 ctgataaatgtgttgcaaatttattttgcccatgttttataataat 227  Q
    || ||||||||||||||| ||| |||| |||||| |||||||||||    
T  28750766 cttataaatgtgttgcaatttttttttacccatgctttataataat 28750811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 27863808 - 27863751
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    |||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||    
T  27863808 ttatgtaaatttctctgaatttcttatataaacccttataaattggacaatttcttta 27863751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 13103136 - 13103223
Alignment:
Q  81 tttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttct 171  Q
    ||||||||||||  ||||||||||||||||||| ||||||||||||| |||||||||||  ||   |||||||| ||| ||||||||||||    
T  13103136 tttatgtaaattcctctgaatttcttatataaacctttataaattgggcaatttctttagatt---ttttgattatttgcttgcaatttct 13103223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 243
Target Start/End: Complemental strand, 34103794 - 34103638
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatc 181  Q
    |||||||||||  ||||||||||||||||||| |  ||||||||||  ||||||||||  |    |||| ||| |||  ||||||||||| || |||| |    
T  34103794 ttatgtaaattcctctgaatttcttatataaacccgtataaattgggaaatttctttagat----tttttattatttgtttgcaatttcttatgtaaacc 34103699  T
Q  182 ctgataaatgtgttgcaaatttattttgcccatgttttataataatcgtgtctccggcactg 243  Q
     |  |||||||||||| ||||||||||||| | | |||||||||||| || ||||| |||||    
T  34103698 tttgtaaatgtgttgc-aatttattttgcctaggctttataataatcctggctccgccactg 34103638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 14309832 - 14309874
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    |||||||||||||||||||  |||||||||| |||||||||||    
T  14309832 tgaatttcttatataaatccctataaattgggcaatttcttta 14309874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 82 - 208
Target Start/End: Original strand, 41674725 - 41674849
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatc 181  Q
    |||||||||| | ||||||||| ||||||||| | |||||||||||||||||||||||  |||  |||| | | ||| |||||||||||| |||||||||    
T  41674725 ttatgtaaatctctctgaattttttatataaacccttataaattggacaatttctttagattt--ttttaactatttgcttgcaatttcttatataaatc 41674822  T
Q  182 ctgataaatgtgttgcaaatttatttt 208  Q
    |  ||||||||||||||||||| ||||    
T  41674823 cctataaatgtgttgcaaatttttttt 41674849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 245
Target Start/End: Original strand, 28321722 - 28321882
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatc 181  Q
    |||||||||||   |||||| ||||||||||| | ||||||||||| ||||||| || | ||||   |||||| ||| ||| |||||||| ||||||| |    
T  28321722 ttatgtaaattctcctgaatatcttatataaacccttataaattgggcaatttcattgaatttt---ttgattatttgcttccaatttcttatataaacc 28321818  T
Q  182 ctgataaatgtgttgcaaatttattttgcccatgttttataataatcgtgtctccggcactgct 245  Q
    |  ||||||||||||||| |||  ||||||||   |||||||||||| || ||||| |||||||    
T  28321819 cctataaatgtgttgcaatttttatttgcccagactttataataatcctggctccgccactgct 28321882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 23685406 - 23685503
Alignment:
Q  99 aatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatcctgataaatgtgttgca 198  Q
    ||||||||||||||||| ||||||||| |||||||| ||||   | |||||||||| ||| |||||||||||| || |||| ||| |||||| |||||||    
T  23685406 aatttcttatataaatccttataaatttgacaatttattta---tatattttgattatttgcttgcaatttcttatgtaaacccttataaatatgttgca 23685502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 33009767 - 33009654
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttcttta-atttttattttgattgtttacttgcaatttctcatataaatcctgataaatgtgtt 195  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||   ||| ||| |||||||||| | || |||| ||  ||||| |||||    
T  33009767 tgaatttgttatataaatccttataaattggacaatttctttagatttttatt---attatttgcttgcaattttttatgtaaacccatataaacgtgtt 33009671  T
Q  196 gcaaatttattttgccc 212  Q
    ||||| || ||||||||    
T  33009670 gcaaaatttttttgccc 33009654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 243
Target Start/End: Original strand, 14539723 - 14539881
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatc 181  Q
    |||||||| ||  ||||||||||||||||||||   |||||||| | |||||||||||  |||| ||   ||| ||| |||||||||||| |||||||      
T  14539723 ttatgtaatttcctctgaatttcttatataaattcctataaattaggcaatttctttagattttttt---attattttcttgcaatttcttatataaaca 14539819  T
Q  182 ctgataaatgtgttgcaaatttattttgcccatgttttataataatcgtgtctccggcactg 243  Q
    |  ||||||||||||||||||| ||||| | | | ||||||| |||| || ||||| |||||    
T  14539820 cctataaatgtgttgcaaattttttttgtctaggctttataacaatcctggctccgccactg 14539881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 6318492 - 6318605
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatcctgataaatgtgttg 196  Q
    |||||||||||||||||||  |||||||||| |||||||||||  |||  |||| ||| ||| |||||||||||  || |||  ||  ||||||||||||    
T  6318492 tgaatttcttatataaatccctataaattgggcaatttctttagattt--tttttattatttgcttgcaatttcaaatgtaagcccctataaatgtgttg 6318589  T
Q  197 caaatttattttgccc 212  Q
    ||| ||| ||||||||    
T  6318590 caatttttttttgccc 6318605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 29846536 - 29846494
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    ||||||||||||||||| |  ||||||||||||||||||||||    
T  29846536 tgaatttcttatataaacccctataaattggacaatttcttta 29846494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 25665316 - 25665249
Alignment:
Q  99 aatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaattt 169  Q
    |||||||||||||||  ||||||||||||  ||||||||||| ||   |||||||| ||| ||||||||||    
T  25665316 aatttcttatataaacatttataaattgggtaatttctttaagtt---ttttgattatttgcttgcaattt 25665249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 40277324 - 40277364
Alignment:
Q  99 aatttcttatataaatctttataaattggacaatttcttta 139  Q
    |||||||||||||||||  |||||||||| |||||||||||    
T  40277324 aatttcttatataaatccctataaattgggcaatttcttta 40277364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 85 - 245
Target Start/End: Complemental strand, 50328902 - 50328745
Alignment:
Q  85 tgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatcctg 184  Q
    ||||||||  ||| ||||||||||||||| || ||||||||||||||||||||||| ||   |||| ||| || ||||||||||| | || |||| |||     
T  50328902 tgtaaattcctcttaatttcttatataaacctctataaattggacaatttctttaaatt---tttttattattcacttgcaattttttatgtaaaccctt 50328806  T
Q  185 ataaatgtgttgcaaatttattttgcccatgttttataataatcgtgtctccggcactgct 245  Q
    ||||||||||||||||| | |||||||||   |||||||||||| ||  |||| |||||||    
T  50328805 ataaatgtgttgcaaatattttttgcccaaactttataataatcttggttccgccactgct 50328745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 98 - 244
Target Start/End: Original strand, 322584 - 322727
Alignment:
Q  98 gaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaa-tcctgataaatgtgttg 196  Q
    |||||||||||||||| |  ||||||||||||||||||||||| ||   |||||||| ||| |||||||||||| || ||||  |||| |||||||||||    
T  322584 gaatttcttatataaacccctataaattggacaatttctttaaatt---ttttgattatttgcttgcaatttcttatgtaaacacctg-taaatgtgttg 322679  T
Q  197 caaatttattttgcccatgttttataataatcgtgtctccggcactgc 244  Q
    ||| ||| |||||||||   ||| |||||||| || ||||| ||||||    
T  322680 caatttttttttgcccagactttgtaataatcctggctccgccactgc 322727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 35322722 - 35322837
Alignment:
Q  81 tttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaat 180  Q
    ||||| ||||||| ||||||| ||||||||||| || ||||||||| ||||||||||||  ||   |||||||| ||| |||||||||||| |||||||     
T  35322722 tttatataaatttctctgaatctcttatataaacctctataaattgaacaatttctttagatt---ttttgattatttgcttgcaatttcttatataaac 35322818  T
Q  181 cctgataaatgtgttgcaa 199  Q
    ||  ||||| |||||||||    
T  35322819 ccctataaaagtgttgcaa 35322837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 11054550 - 11054439
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatcctgataaatgtgttg 196  Q
    ||||||||||||||||| || |||||||||| |||| |||||| | ||| ||||  || ||| |||||||||||| || |||| | | ||||||||||||    
T  11054550 tgaatttcttatataaacctctataaattgggcaatctctttagtattttttttatttatttgcttgcaatttcttatgtaaacctttataaatgtgttg 11054451  T
Q  197 caaatttatttt 208  Q
    ||| ||| ||||    
T  11054450 caactttttttt 11054439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 208
Target Start/End: Original strand, 12792250 - 12792373
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttcttta-atttttattttgattgtttacttgcaatttctcatataaat 180  Q
    |||||||||||| ||||||||||||||||||| |  |||||||||| ||||| ||||| |||||||    |||| ||| |||| ||||||| |||||||     
T  12792250 ttatgtaaatttctctgaatttcttatataaacccctataaattgggcaattactttagattttta----gattatttgcttgaaatttcttatataaac 12792345  T
Q  181 cctgataaatgtgttgcaaatttatttt 208  Q
        ||||||||||||||||||| ||||    
T  12792346 atctataaatgtgttgcaaatttttttt 12792373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 5780790 - 5780836
Alignment:
Q  99 aatttcttatataaatctttataaattggacaatttctttaattttt 145  Q
    ||||||||||||||||| ||||||||||| |||||||||||| ||||    
T  5780790 aatttcttatataaatccttataaattgggcaatttctttaaatttt 5780836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 47084121 - 47084064
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    |||||||||||| ||||||||||||||||||| |  ||||||||||  ||||||||||    
T  47084121 ttatgtaaatttctctgaatttcttatataaacccctataaattgggtaatttcttta 47084064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 199
Target Start/End: Original strand, 17888569 - 17888683
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatc 181  Q
    |||||||||||  | ||||||||||||||||  |  |||||||||| |||||||||||  ||   |||| ||| ||| |||||||||||| || |||| |    
T  17888569 ttatgtaaattcctatgaatttcttatataaccccctataaattgggcaatttctttagatt---tttttattatttgcttgcaatttcttatgtaaacc 17888665  T
Q  182 ctgataaatgtgttgcaa 199  Q
    |  |||||||||||||||    
T  17888666 cctataaatgtgttgcaa 17888683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 16338247 - 16338289
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    ||||||| |||||||||||  ||||||||||||||||||||||    
T  16338247 tgaattttttatataaatccctataaattggacaatttcttta 16338289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 52632612 - 52632570
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    |||||||||||||||||||  |||||||||| |||||||||||    
T  52632612 tgaatttcttatataaatccctataaattgggcaatttcttta 52632570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 9742552 - 9742609
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    |||||||||||  |||||||||||||||| || |  |||||||||| |||||||||||    
T  9742552 ttatgtaaattcctctgaatttcttatattaacccctataaattgggcaatttcttta 9742609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 10094412 - 10094457
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattgg 127  Q
    |||||||||||| ||||||||||||||||||| |  ||||||||||    
T  10094412 ttatgtaaatttctctgaatttcttatataaacccctataaattgg 10094457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 19124757 - 19124852
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaat 180  Q
    |||||||||||  |||||||||||||||||||  | | |||||||  |||||||||||| ||   |||| ||| ||||||| |||||||| || |||||    
T  19124757 ttatgtaaattcctctgaatttcttatataaacatctgtaaattgatcaatttctttaaatt---tttttattatttacttacaatttcttatgtaaat 19124852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 42119731 - 42119588
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatc 181  Q
    |||||||||||  ||||||||||||||||||| || ||||||||||||||||||||||  ||   |||| ||| |||  ||| ||||||| || |||| |    
T  42119731 ttatgtaaattcctctgaatttcttatataaacctctataaattggacaatttctttagatt---tttttattatttgtttgtaatttcttatgtaaacc 42119635  T
Q  182 ctgataaatgtgttgcaaatttattttgcccatgttttataataatc 228  Q
    |  ||||||||||||||| ||| ||||| ||||| ||||||||||||    
T  42119634 cctataaatgtgttgcaattttcttttgtccatgctttataataatc 42119588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 11856404 - 11856261
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaa-t 180  Q
    ||||||||||   |||||||||||||||||||||  |||||||||| |||||||||||  ||   |||||||| |||||||||||||||| || |||| |    
T  11856404 ttatgtaaatcgctctgaatttcttatataaatcactataaattgggcaatttctttagatt---ttttgattatttacttgcaatttcttatgtaaact 11856308  T
Q  181 cctgataaatgtgttgcaaatttattttgcccatgttttataataatc 228  Q
    ||| |||||| |||||||| | | ||||||||| | ||||||||||||    
T  11856307 cct-ataaatatgttgcaattattttttgcccaggctttataataatc 11856261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 211
Target Start/End: Original strand, 36769093 - 36769218
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatc 181  Q
    |||||||||||  ||||||||||||||||||| || ||| |||| | |||||||||||  |    |||||||| ||| |||||||||||  || |||| |    
T  36769093 ttatgtaaattcctctgaatttcttatataaacctctatgaattaggcaatttctttagat----ttttgattatttgcttgcaatttcatatgtaaacc 36769188  T
Q  182 ctgataaatgtgttgcaaatttattttgcc 211  Q
    |  ||||||||||||||||||| |||||||    
T  36769189 cctataaatgtgttgcaaattttttttgcc 36769218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 29790238 - 29790301
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaattttt 145  Q
    |||||||||||  | ||||||||||||||||| ||||||||||||| ||||||||||| |||||    
T  29790238 ttatgtaaattcttatgaatttcttatataaacctttataaattgggcaatttctttagttttt 29790301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 15475413 - 15475476
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaattttt 145  Q
    |||||||||||| ||| ||||| |||||||||||| ||||||||| | ||||||||||| ||||    
T  15475413 ttatgtaaatttctcttaattttttatataaatctatataaattgaaaaatttctttaaatttt 15475476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 237
Target Start/End: Original strand, 33271304 - 33271440
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatcctgataaatgtgttg 196  Q
    ||||||||||||||||| || ||||||||||||||||||||||    |  |||| ||| |||  ||| ||||||| ||||||| ||  |||||| | |||    
T  33271304 tgaatttcttatataaacctctataaattggacaatttcttta----tattttttattatttgtttgtaatttcttatataaacccctataaatatattg 33271399  T
Q  197 caaatttattttgcccatgttttataataatcgtgtctccg 237  Q
    ||||||| ||||||| |   |||||||||||| || |||||    
T  33271400 caaatttgttttgcctagactttataataatcatgactccg 33271440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 9738017 - 9738059
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  9738017 tgaatttcttatataaatccctataaattggacaatttcttta 9738059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 25560363 - 25560460
Alignment:
Q  99 aatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatcctgataaatgtgttgca 198  Q
    |||||||||||||||  | ||||||||||||||||||||||    ||||||| ||| ||| |||||||||||| || |||| ||  ||||||||||||||    
T  25560363 aatttcttatataaacatctataaattggacaatttcttta--gattatttt-attatttgcttgcaatttcttatgtaaacccatataaatgtgttgca 25560459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 243
Target Start/End: Original strand, 8456997 - 8457140
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatcctgataaatgtgttg 196  Q
    ||||||||||||||||  |  |||||||||| |||||||||||  |||| ||   ||| ||| |||||||||||| || |||| ||  |||||| |||||    
T  8456997 tgaatttcttatataaccccctataaattgggcaatttctttagattttttt---attatttgcttgcaatttcttatgtaaacccctataaatatgttg 8457093  T
Q  197 caaatttattttgcccatgttttataataatcgtgtctccggcactg 243  Q
    ||| ||| ||||||||  | |||| ||||||| || ||||| |||||    
T  8457094 caatttttttttgcccgggctttacaataatcttggctccgccactg 8457140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 614411 - 614468
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    |||||||||||  ||||||||| |||||||||||  |||||||| | |||||||||||    
T  614411 ttatgtaaattcctctgaattttttatataaatccctataaatttggcaatttcttta 614468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 208
Target Start/End: Original strand, 29491433 - 29491554
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatc 181  Q
    |||||||||||| | |||||||||||||| || |  |||||||||||||| |||||||| ||   |||||||| ||| |||||||||||| ||  |||      
T  29491433 ttatgtaaatttctatgaatttcttatat-aacccctataaattggacaa-ttctttaaatt---ttttgattatttgcttgcaatttcttatgcaaaca 29491527  T
Q  182 ctgataaatgtgttgcaaatttatttt 208  Q
    |  ||||||||||||||| ||| ||||    
T  29491528 catataaatgtgttgcaattttttttt 29491554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 30745454 - 30745367
Alignment:
Q  81 tttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttct 171  Q
    ||||||||||||| |||||||||||| ||||||||  ||||||||||||||||||||||| ||   |||||||| ||||||||||||||||    
T  30745454 tttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaatt---ttttgattatttacttgcaatttct 30745367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 30766905 - 30766818
Alignment:
Q  81 tttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttct 171  Q
    ||||||||||||| |||||||||||| ||||||||  ||||||||||||||||||||||| ||   |||||||| ||||||||||||||||    
T  30766905 tttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaatt---ttttgattatttacttgcaatttct 30766818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 228
Target Start/End: Original strand, 44462496 - 44462641
Alignment:
Q  81 tttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctt-taatttttattttgattgtttacttgcaatttctcatataaa 179  Q
    ||||||||||| ||||||||||||||||| ||| || |||||||| ||||||||||| | |||||| |||||||| |||||||||| ||||| |||||||    
T  44462496 tttatgtaaatctatctgaatttcttatacaaacctctataaattagacaatttcttctgattttt-ttttgattatttacttgcagtttcttatataaa 44462594  T
Q  180 tcctgataaatgtgttgcaaatttattttgcccatgttttataataatc 228  Q
     ||  | |||| ||||||||  || |||||| ||  |||||||||||||    
T  44462595 cccctaaaaatatgttgcaa--tttttttgctcagattttataataatc 44462641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 26835447 - 26835329
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatc 181  Q
    ||||||||||| || |||||||||||||||||    ||||||||| ||||||| ||||  ||||   |||||| ||| ||||||||||||||| |||| |    
T  26835447 ttatgtaaattcatatgaatttcttatataaactcctataaattgaacaatttttttagatttt---ttgattatttgcttgcaatttctcatgtaaacc 26835351  T
Q  182 ctgataaatgtgttgcaaattt 203  Q
    |  |||||||||||||||||||    
T  26835350 catataaatgtgttgcaaattt 26835329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 44107469 - 44107534
Alignment:
Q  147 ttttgattgtttacttgcaatttctcatataaatcctgataaatgtgttgcaaatttattttgccc 212  Q
    |||||||| |||||||||||||||| || |||| ||| ||||||||||||||||||  ||||||||    
T  44107469 ttttgattatttacttgcaatttcttatgtaaaaccttataaatgtgttgcaaattatttttgccc 44107534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 37189749 - 37189697
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaattt 134  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||||||||    
T  37189749 ttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 37189697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 228
Target Start/End: Complemental strand, 5558402 - 5558276
Alignment:
Q  98 gaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaa-tcctgataaatgtgttg 196  Q
    |||||||||||||||| |  ||||||||||||||||||||||  |    |||||||| ||| |||||||||||  ||||||| |||| |||||| |||||    
T  5558402 gaatttcttatataaacccctataaattggacaatttctttagat----ttttgattatttgcttgcaatttcatatataaactcct-ataaatatgttg 5558308  T
Q  197 caaatttattttgcccatgttttataataatc 228  Q
     || ||| |||||||||   ||||||||||||    
T  5558307 taatttttttttgcccagactttataataatc 5558276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 23908379 - 23908337
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  23908379 tgaatttcttatataaatccctataaattggacaatttcttta 23908337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 213
Target Start/End: Original strand, 10907667 - 10907794
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatc 181  Q
    |||||||||||  ||||||||||||||||||| |  |||||||  |||||||||||||  ||   |||||||| ||| |||||||||||| || || |      
T  10907667 ttatgtaaattcctctgaatttcttatataaacccctataaatcagacaatttctttagatt---ttttgattatttgcttgcaatttcttatgtagaca 10907763  T
Q  182 ctgataaatgtgttgcaaatttattttgccca 213  Q
    |  ||||||||||||| ||||| |||||||||    
T  10907764 cctataaatgtgttgc-aattttttttgccca 10907794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 13132005 - 13131948
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    |||||||||||  ||| ||||| |||||||||||  ||||||||||||||||||||||    
T  13132005 ttatgtaaattcctctaaattttttatataaatcactataaattggacaatttcttta 13131948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 45968715 - 45968652
Alignment:
Q  147 ttttgattgtttacttgcaatttctcatataaatcctgataaatgtgttgcaaatttattttgc 210  Q
    |||||||| |||||||||||||||| || ||||||||  ||||||| |||  ||||||||||||    
T  45968715 ttttgattatttacttgcaatttcttatgtaaatcctcttaaatgtattgtgaatttattttgc 45968652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 3346880 - 3346838
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    ||||||||||||||||| |  ||||||||||||||||||||||    
T  3346880 tgaatttcttatataaacccctataaattggacaatttcttta 3346838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 10156050 - 10156092
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    |||||||||||||||||  | ||||||||||||||||||||||    
T  10156050 tgaatttcttatataaacttctataaattggacaatttcttta 10156092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 42456681 - 42456623
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaa 140  Q
    |||||||||||  | ||||||||||||||||| |  |||||||||| ||||||||||||    
T  42456681 ttatgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttaa 42456623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 1106822 - 1106762
Alignment:
Q  148 tttgattgtttacttgcaatttctcatataaatcctgataaatgtgttgcaaatttatttt 208  Q
    ||||||| ||| |||||||||||| || ||||| || ||||||||||||| ||||| ||||    
T  1106822 tttgattatttgcttgcaatttcttatgtaaattcttataaatgtgttgctaatttttttt 1106762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 38859960 - 38859849
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatc 181  Q
    |||||||||||  | ||||||||||||||||| |  |||||||||| |||||| ||||  ||   |||| ||| ||| |||||||||||| || |||| |    
T  38859960 ttatgtaaattcctatgaatttcttatataaacccctataaattgggcaatttttttagatt---tttttattatttgcttgcaatttcttatgtaaacc 38859864  T
Q  182 ctgataaatgtgttg 196  Q
    |  ||||||||||||    
T  38859863 cctataaatgtgttg 38859849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 81 - 228
Target Start/End: Complemental strand, 10112157 - 10112013
Alignment:
Q  81 tttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaat 180  Q
    ||||||||||||  ||| |||||||||||||||   |||||||||||||||||||||| | ||   |||||||| |||| ||||||||||| || ||||     
T  10112157 tttatgtaaattcctcttaatttcttatataaactcttataaattggacaatttcttttaatt---ttttgattatttatttgcaatttcttatgtaaac 10112061  T
Q  181 cctgataaatgtgttgcaaatttattttgcccatgttttataataatc 228  Q
    ||  |||||| |||||||| |||||| |||  | | ||||||||||||    
T  10112060 ccctataaatatgttgcaattttattatgcgtaggctttataataatc 10112013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 249
Target Start/End: Original strand, 34697431 - 34697572
Alignment:
Q  105 ttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatcctgataaatgtgttgcaaattta 204  Q
    |||||||||||| |||||||||   |||||||||||||||| ||   ||| ||| |||||||||||| || ||||| || |||||| ||||||||  |||    
T  34697431 ttatataaatctctataaattgagaaatttctttaatttttttt---attatttgcttgcaatttcttatgtaaattcttataaatatgttgcaatatta 34697527  T
Q  205 ttttgcccatgttttataataatcgtgtctccggcactgctcaca 249  Q
    |||||||||   |||||||||||  || ||||| | |||||||||    
T  34697528 ttttgcccaaactttataataattctggctccgccgctgctcaca 34697572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 16591440 - 16591514
Alignment:
Q  163 gcaatttctcatataaatcctgataaatgtgttgcaaatttattttgcccatgttttataataatcgtgtctccg 237  Q
    ||||||||| || |||| ||| ||||||||||||||| ||| ||||||||||  |||||||||||| || |||||    
T  16591440 gcaatttcttatgtaaacccttataaatgtgttgcaatttttttttgcccatactttataataatcctggctccg 16591514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 16591394 - 16591449
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctt 137  Q
    |||||||||||| |  ||||||||||||||||||  |||||||||| |||||||||    
T  16591394 ttatgtaaatttctaagaatttcttatataaatcactataaattgggcaatttctt 16591449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 21525452 - 21525410
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    ||||||||||||||||| |  ||||||||||||||||||||||    
T  21525452 tgaatttcttatataaacccctataaattggacaatttcttta 21525410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 42072522 - 42072480
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    ||||||||||||||||| |  ||||||||||||||||||||||    
T  42072522 tgaatttcttatataaacccctataaattggacaatttcttta 42072480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 242
Target Start/End: Complemental strand, 10334287 - 10334130
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatc 181  Q
    |||||||||||  |||||||||||||||||||   ||||||||||| |||||||||||     |||||| | | ||| |||||||||||| || |||| |    
T  10334287 ttatgtaaattcctctgaatttcttatataaactcttataaattgggcaatttcttta---gatatttttaatatttgcttgcaatttcttatgtaaacc 10334191  T
Q  182 ctgataaatgtgttgcaaatttattttgcccatgttttataataatcgtgtctccggcact 242  Q
    |  ||||||||||||||| ||| |||||| ||   |||||||||||| || ||||| ||||    
T  10334190 cctataaatgtgttgcaattttcttttgctcagactttataataatcctgactccgccact 10334130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 17303133 - 17303276
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatc 181  Q
    |||||||||||  | ||||||||||||||||| | || |||||||| |||||||||||  |||  |||| ||| ||| |||||||||||| || |||| |    
T  17303133 ttatgtaaattcctatgaatttcttatataaacccttgtaaattgggcaatttctttagattt--tttttattatttgcttgcaatttcttatgtaaacc 17303230  T
Q  182 ctgataaatgtgttgcaaatttattttgcccatgttttataataat 227  Q
       ||||||||||||||| ||| ||||||||| | |||| ||||||    
T  17303231 actataaatgtgttgcaatttttttttgcccaggctttacaataat 17303276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 19334594 - 19334706
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatcctgataaatgtgttg 196  Q
    ||||||||||||||||| |  ||||||||||||||||||||||  |||  |||| ||| ||| |||||||||||| ||||||| ||| |||||| |||||    
T  19334594 tgaatttcttatataaacccctataaattggacaatttctttagattt--tttttattatttgcttgcaatttcttatataaaccct-ataaatttgttg 19334690  T
Q  197 caaatttattttgccc 212  Q
    |||  || ||||||||    
T  19334691 caatatttttttgccc 19334706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 15017882 - 15017825
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    |||||||||||  |||||||||||||||||||    ||||||||||||||||||||||    
T  15017882 ttatgtaaattcctctgaatttcttatataaacgcgtataaattggacaatttcttta 15017825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 33057691 - 33057798
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaatcctgataaatgtgttg 196  Q
    ||||||||||||||||  |  ||||||||| ||||||||||||  ||   |||| ||| ||| |||||||||||| || |||||||| ||||||||||||    
T  33057691 tgaatttcttatataatcccctataaattgaacaatttctttagatt---tttttattatttgcttgcaatttcttatgtaaatcct-ataaatgtgttg 33057786  T
Q  197 caaatttatttt 208  Q
    ||| ||| ||||    
T  33057787 caattttttttt 33057798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 29555973 - 29556015
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    ||||||||||||||||| |  ||||||||||||||||||||||    
T  29555973 tgaatttcttatataaacccctataaattggacaatttcttta 29556015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 29981147 - 29981189
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    |||||||||||||||||  | ||||||||||||||||||||||    
T  29981147 tgaatttcttatataaacttctataaattggacaatttcttta 29981189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 32876564 - 32876606
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    ||||||||||||||||| |  ||||||||||||||||||||||    
T  32876564 tgaatttcttatataaacccctataaattggacaatttcttta 32876606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 44164765 - 44164819
Alignment:
Q  85 tgtaaatttatctgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    ||||||||| | ||||||||||||||||| |  |||||||||| |||||||||||    
T  44164765 tgtaaatttctatgaatttcttatataaacccctataaattgggcaatttcttta 44164819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 20850 - 20907
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    |||||||||||  ||||||||||||||||||| || ||||||||||||||||| ||||    
T  20850 ttatgtaaattcctctgaatttcttatataaagctctataaattggacaattttttta 20907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 34471 - 34612
Alignment:
Q  82 ttatgtaaatttatctgaatttcttatataaatctttataaattggacaatttctttaatttttattttgattgtttacttgcaatttctcatataaa-t 180  Q
    ||||||||||   ||||||||  |||||||||||| ||||||||||||| ||||||||  ||   |||||||| ||| ||| |||||||| || |||| |    
T  34471 ttatgtaaatccctctgaattctttatataaatctctataaattggacagtttctttagatt---ttttgattatttgcttacaatttcttatgtaaact 34567  T
Q  181 cctgataaatgtgttgcaaatttattttgcccatgttttataataat 227  Q
    ||| ||||| ||||||  ||||| |||||||||  ||||||||||||    
T  34568 cct-ataaacgtgttg-taattttttttgcccagattttataataat 34612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 54613 - 54571
Alignment:
Q  97 tgaatttcttatataaatctttataaattggacaatttcttta 139  Q
    ||||||| |||||||||||  ||||||||||||||||||||||    
T  54613 tgaattttttatataaatccctataaattggacaatttcttta 54571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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