View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2292_low_14 (Length: 387)

Name: NF2292_low_14
Description: NF2292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2292_low_14
NF2292_low_14
[»] chr1 (1 HSPs)
chr1 (87-376)||(27867669-27867959)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 87 - 376
Target Start/End: Original strand, 27867669 - 27867959
Alignment:
Q  87 gcaaataaaatgttatttataataccattccttcaataaaaatgttctgataaacattttattgagttagatgaatcatcgagactgttttgaattggta 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27867669 gcaaataaaatgttatttataataccattccttcaataaaaatgttctgataaacattttattgagttagatgaatcatcgagactgttttgaattggta 27867768  T
Q  187 ttatgtttaattgtttttgaagtgaataattttaaaataatgagactgatcttgagggtaaaaataaaatttagttttaaaatgtctcttctcctcatgt 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||    
T  27867769 ttatgtttaattgtttttgaagtgaataattttaaaataatgagactgatcttgagggtaaaaatataatttagttttaaaatatctctcctcctcatgt 27867868  T
Q  287 gaaccaaacataaaattgaatt-aaaatttattctcttccctctatactcttttcaatcaaacatatgtttaaatctcatattctcccttt 376  Q
    |||||||||||||||||||||| ||||| |||||||| |||||||||||||||| |||||||||||||||||| |||| ||||||||||||    
T  27867869 gaaccaaacataaaattgaattaaaaatctattctctcccctctatactcttttgaatcaaacatatgtttaactctcctattctcccttt 27867959  T

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