View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2292_low_15 (Length: 346)
Name: NF2292_low_15
Description: NF2292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2292_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 28651291 - 28651068
Alignment:
| Q |
23 |
atggagtaacaaaagttccacgcatgttctatcacgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccctacaat |
122 |
Q |
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| T |
28651291 |
atggagtaacaaaagttccacgcatgttctattgtgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccctacaat |
28651192 |
T |
|
| Q |
123 |
tgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggattctttcaagtaataaat |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28651191 |
tgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaataaat |
28651092 |
T |
|
| Q |
223 |
catggaattccagttcatgttttg |
246 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
28651091 |
catggaattccagttcatgttttg |
28651068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 23 - 249
Target Start/End: Complemental strand, 28642430 - 28642204
Alignment:
| Q |
23 |
atggagtaacaaaagttccacgcatgttctatcacgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccctacaat |
122 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||| |||||| ||| | ||| | ||||| |||| ||||||| |||||||||||||| |
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| T |
28642430 |
atggagtaacaaaagttccacacatgttctattgtgaacaatctagtatcaatgatgtttcagtgaatgaatcaaattcaaagctaagtatccctacaat |
28642331 |
T |
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| Q |
123 |
tgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggattctttcaagtaataaat |
222 |
Q |
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| T |
28642330 |
tgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaataaat |
28642231 |
T |
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| Q |
223 |
catggaattccagttcatgttttggat |
249 |
Q |
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||||||||||||||||||||||||||| |
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| T |
28642230 |
catggaattccagttcatgttttggat |
28642204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 28671013 - 28670802
Alignment:
| Q |
23 |
atggagtaacaaaagttccacgcatgttctatcacgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccctacaat |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||| | ||||| |||| ||||||||||| |||||||||| |
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| T |
28671013 |
atggagtaacaaaagttccacgcatgttctattgtgaacaatctaatatcaatcatggttcagtaaatgaatcaaattcaaagcttagtgtccctacaat |
28670914 |
T |
|
| Q |
123 |
tgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggattctttcaagtaataaat |
222 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||| ||| || || |||||||||||||||||||||||||||||||||||||||| |
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| T |
28670913 |
tgacttaacaggaatccatgatgatcctgttttgagagatgaagttgtaagaaaagttcgaaatgcaagtgagaaatggggattctttcaagtaataaat |
28670814 |
T |
|
| Q |
223 |
catggaattcca |
234 |
Q |
| |
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|||||||||||| |
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| T |
28670813 |
catggaattcca |
28670802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 87 - 234
Target Start/End: Complemental strand, 28675093 - 28674946
Alignment:
| Q |
87 |
cagtgaattaaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaat |
186 |
Q |
| |
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|||||||| |||| ||||||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| || || ||||| |
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| T |
28675093 |
cagtgaatcaaatttaaagcttagcatccctacaattgacttaacaggaatccacgatgatcctcttttgagagatgaagttgtgagaaaagttcaaaat |
28674994 |
T |
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| Q |
187 |
gcaagtgagaaatggggattctttcaagtaataaatcatggaattcca |
234 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28674993 |
gcaagtgagaaatggggattctttcaagtgataaatcatggaattcca |
28674946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 107 - 249
Target Start/End: Complemental strand, 28691549 - 28691407
Alignment:
| Q |
107 |
ttagtatccctacaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggatt |
206 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||||||||||| || |||||||||||||| ||||||| || ||||||||||| ||||||| |||||||| |
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| T |
28691549 |
ttagtatccctacaattgacctaacaggaatccatgatgatcttgttttgagagatgaagctgtgagaaaagttgaaaatgcatgtgagaagtggggatt |
28691450 |
T |
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| Q |
207 |
ctttcaagtaataaatcatggaattccagttcatgttttggat |
249 |
Q |
| |
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||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
28691449 |
ctttcaagtaataaatcatggaatttcagctcatgttttggat |
28691407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 96 - 234
Target Start/End: Complemental strand, 28696445 - 28696307
Alignment:
| Q |
96 |
aaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgag |
195 |
Q |
| |
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|||| ||||||| |||||||| |||||||| ||| |||||||||| |||||| || ||||| |||||||||||||||| || || |||||||||||||| |
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| T |
28696445 |
aaattcaaagctaagtatcccaccaattgacctaacaggaatccataatgatcttgttttgaaagatgaagttgtgagaaaagttcaaaatgcaagtgag |
28696346 |
T |
|
| Q |
196 |
aaatggggattctttcaagtaataaatcatggaattcca |
234 |
Q |
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|| |||||||||||||||||||||||||||||||||||| |
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| T |
28696345 |
aattggggattctttcaagtaataaatcatggaattcca |
28696307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 28741621 - 28741514
Alignment:
| Q |
90 |
tgaattaaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgca |
189 |
Q |
| |
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||||| |||| ||||| ||||||||| || |||||| ||| ||||||||||||||||| || |||||||||| |||||||||| || || ||||| || |
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| T |
28741621 |
tgaatgaaattcaaagattagtatccgtagaattgatttaccaggaatccatgatgatcttgttttgagagatacagttgtgagaaaagttcaaaattca |
28741522 |
T |
|
| Q |
190 |
agtgagaa |
197 |
Q |
| |
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||||||| |
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|
| T |
28741521 |
tgtgagaa |
28741514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 28733457 - 28733368
Alignment:
| Q |
62 |
aatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatgatcctg |
151 |
Q |
| |
|
||||| |||||||| ||| | ||| || ||||| |||| ||||| |||||||||||| |||||| ||| |||||||||||||||||||| |
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| T |
28733457 |
aatctaatatcaacgatgtttcagtcaatgaataaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctg |
28733368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 28717651 - 28717610
Alignment:
| Q |
208 |
tttcaagtaataaatcatggaattccagttcatgttttggat |
249 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||||||| |
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| T |
28717651 |
tttcaagtaataaatcatggaatttcaactcatgttttggat |
28717610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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