View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2292_low_16 (Length: 338)

Name: NF2292_low_16
Description: NF2292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2292_low_16
NF2292_low_16
[»] chr6 (3 HSPs)
chr6 (83-222)||(34930370-34930509)
chr6 (83-222)||(34935886-34936025)
chr6 (83-222)||(34925930-34926069)


Alignment Details
Target: chr6 (Bit Score: 124; Significance: 9e-64; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 83 - 222
Target Start/End: Original strand, 34930370 - 34930509
Alignment:
Q  83 aataatattaaagaactgaaactaaaattgtgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaagacaaaacttacatgggattg 182  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  34930370 aataatattaaaggactgaaactaaaattatgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaaaacagaacttacatgggattg 34930469  T
Q  183 taattcagacttagtcctggcatggtatttgacatccttt 222  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34930470 taattcagacttagtcctggcatggtatttgacatccttt 34930509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 83 - 222
Target Start/End: Original strand, 34935886 - 34936025
Alignment:
Q  83 aataatattaaagaactgaaactaaaattgtgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaagacaaaacttacatgggattg 182  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  34935886 aataatattaaaggactgaaactaaaattatgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaaaacagaacttacatgggattg 34935985  T
Q  183 taattcagacttagtcctggcatggtatttgacatccttt 222  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34935986 taattcagacttagtcctggcatggtatttgacatccttt 34936025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 83 - 222
Target Start/End: Original strand, 34925930 - 34926069
Alignment:
Q  83 aataatattaaagaactgaaactaaaattgtgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaagacaaaacttacatgggattg 182  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  34925930 aataatattaaaggactgaaactaaaattatgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaaaacagaacttacatgggattg 34926029  T
Q  183 taattcagacttagtcctggcatggtatttgacatccttt 222  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  34926030 taattcagacttagtcctggcatggtatttaacatccttt 34926069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University