View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2292_low_17 (Length: 325)
Name: NF2292_low_17
Description: NF2292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2292_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 46937192 - 46937436
Alignment:
| Q |
1 |
ttgaatagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttactacacagagcatg |
100 |
Q |
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| T |
46937192 |
ttgaatagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttactacacagagcatg |
46937291 |
T |
|
| Q |
101 |
aagttgtaggttaaaggttttagcagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaatttggctacattctga |
200 |
Q |
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| T |
46937292 |
aagttgtaggttaaaggttttaacagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaatttggcaacattctga |
46937391 |
T |
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| Q |
201 |
gctaagcatccaagaggacctgtattgtgtatccagaattatcta |
245 |
Q |
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| T |
46937392 |
gctaagcatccaagaggacctgtattgtgtatccagaaatatcta |
46937436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 6 - 185
Target Start/End: Complemental strand, 36639596 - 36639417
Alignment:
| Q |
6 |
tagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttactacacagagcatgaagtt |
105 |
Q |
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| T |
36639596 |
tagtttgcaatgaggtctaattttatggtaaagatatcaacatatgtaacatttacatctggatactggccctgcaatttactgcagaaatcttgaagat |
36639497 |
T |
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| Q |
106 |
gtaggttaaaggttttagcagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaat |
185 |
Q |
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| T |
36639496 |
attgattaaaagctttagcagctaagttatgttaacgaagacatcctagttcatcaagtttcgatggatcagtgccaaat |
36639417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 36634833 - 36634611
Alignment:
| Q |
1 |
ttgaatagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttactacacagagcatg |
100 |
Q |
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|||| |||||||||||||||| |||||||||| ||||||||||||||||| |||||| |||| |||| || ||||||||||| |||| ||| || |
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| T |
36634833 |
ttgagtagtttgcaatgaggtccaattttatggtaaagatatcaacatatgtaacatttagatctagatactggccctgcaattttgcccacaaagcttg |
36634734 |
T |
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| Q |
101 |
aagttgtaggttaaaggttttagcagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaatttggctacattctga |
200 |
Q |
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| T |
36634733 |
caactgtagattaaaggccttagcagcttggttgtgtgcaccaagacatcctagttcatcaatctttgatttatcatggccaaatgtggcaacattttga |
36634634 |
T |
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| Q |
201 |
gctaagcatccaagaggacctgt |
223 |
Q |
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| ||||||||||| |||||||| |
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| T |
36634633 |
cccaagcatccaagtggacctgt |
36634611 |
T |
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