View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2292_low_19 (Length: 301)
Name: NF2292_low_19
Description: NF2292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2292_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 30 - 292
Target Start/End: Complemental strand, 29962869 - 29962607
Alignment:
| Q |
30 |
gcttcctgttcctgttaatgtagaatttgcaattattcaaaggagaagatcaaatgaatctctggtccttaaattatctttacatgttattaattatttc |
129 |
Q |
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| T |
29962869 |
gcttcctgttcctgttaatgtagaatttgcaattattcaaaagagaagatcaaatgaatctctggtccttaaattatctttacatgttattaattatttc |
29962770 |
T |
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| Q |
130 |
tacataatcgtttctggttattgagcagggtgcaggggaggtagaattttttaccgagtatggagaggcaagtcgataccaagtccaagaagtagttgga |
229 |
Q |
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| T |
29962769 |
tacataatcgtttctggttatcgagcagggtgcaggagaggtagaattttttaccgagtatggagaggcaagtcggtaccaagtccaagaagtggttgga |
29962670 |
T |
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| Q |
230 |
aaaggaagttacggtgtagtggtttctgccgtggatactatttctggggaaaaagttgcaatt |
292 |
Q |
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| T |
29962669 |
aaaggaagttacggtgtagtggtttctgccgtggatactatttctggggaaaaagttgcaatt |
29962607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 45175555 - 45175485
Alignment:
| Q |
176 |
ttttttaccgagtatggagaggcaagtcgataccaagtccaagaagtagttggaaaaggaagttacggtgt |
246 |
Q |
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| T |
45175555 |
ttttttactgagtatggagaggcaagtcaataccaggtccaagaaatcattggaaaaggaagttatggtgt |
45175485 |
T |
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