View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2292_low_25 (Length: 261)
Name: NF2292_low_25
Description: NF2292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2292_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 29141546 - 29141308
Alignment:
| Q |
1 |
ataaacaggttctgaagagagtacatggttcataaaaattaagatggtcaacaatgaatgatgaaacagtaaacagaatcccaaatatattttcccattt |
100 |
Q |
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| T |
29141546 |
ataaacaggttctgaagagagtacatggttcataaaaattaagatggtcaacaatgaatgatgaaagagtaaacagaatcccaaatatattttcccattt |
29141447 |
T |
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| Q |
101 |
cttctgttgtctgtcataccaatgtttctttcctgatatggtttaccatgcaataggagtatatctaaaaatcaataatgatgaataatcattactataa |
200 |
Q |
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| T |
29141446 |
cttctgttgtctgtcataccaatgtttctttcctgatatggtttaccatgcaataggagtatatctaaaaatcaataatgatgaatagtcattactataa |
29141347 |
T |
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| Q |
201 |
agacaaaatactttcatacaaagatacaaagtcattact |
239 |
Q |
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| T |
29141346 |
agacaaaatactttcatacaaagatacaaagtcattact |
29141308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 29141315 - 29141281
Alignment:
| Q |
189 |
tcattactataaagacaaaatactttcatacaaag |
223 |
Q |
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||||||||||||| ||||||||||||||||||||| |
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| T |
29141315 |
tcattactataaatacaaaatactttcatacaaag |
29141281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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