View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2292_low_28 (Length: 251)
Name: NF2292_low_28
Description: NF2292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2292_low_28 |
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| [»] chr8 (9 HSPs) |
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| [»] scaffold0350 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 6178272 - 6178509
Alignment:
| Q |
14 |
atatcaaaggccaacttttgtagtaagtcgtgcatttgtattctactgttgtttgaaatggttataagagttttatcttcgaggatttcaatcccactag |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6178272 |
atatcaaaggccaacttttgtagtaagtcgtgcatttgtattctactgttgtttgaaatggttataagagttttatcttcgaggatttctatcccactag |
6178371 |
T |
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| Q |
114 |
ttgcattgaaaccaaaggcatcaagtatccttgtgacgatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatttccttctgtcgcca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6178372 |
ttgcattgaaaccaaaggcatcaagtatccttgtgacgatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatttccttctgtcgcca |
6178471 |
T |
|
| Q |
214 |
tgataatccattataacttgcttttagcactttttgaa |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
6178472 |
tgataatccattataacttgcttttagcactttttgaa |
6178509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 6187062 - 6187299
Alignment:
| Q |
14 |
atatcaaaggccaacttttgtagtaagtcgtgcatttgtattctactgttgtttgaaatggttataagagttttatcttcgaggatttcaatcccactag |
113 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6187062 |
atatcaaaggccatcttttgtagtaagtcgtgcatttgtattctgtcgttgtttgagatggttataagagttttatcttcgaggatttctatcccactag |
6187161 |
T |
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| Q |
114 |
ttgcattgaaaccaaaggcatcaagtatccttgtgacgatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatttccttctgtcgcca |
213 |
Q |
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| T |
6187162 |
ttgcattgaaaccaaaggcatctagtatccttgtgacgatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatttccttctgtcgcca |
6187261 |
T |
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| Q |
214 |
tgataatccattataacttgcttttagcactttttgaa |
251 |
Q |
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| T |
6187262 |
tgataatccattataacttgttcttagcactttttgaa |
6187299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 6140215 - 6140452
Alignment:
| Q |
14 |
atatcaaaggccaacttttgtagtaagtcgtgcatttgtattctactgttgtttgaaatggttataagagttttatcttcgaggatttcaatcccactag |
113 |
Q |
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||||| ||||||| ||||||||||| ||| |||||||||||||| |||||||||||||||||||||| ||| ||||| ||||||| |||||||||| |
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| T |
6140215 |
atatccaaggccatcttttgtagtaggtcatgcatttgtattctgtcattgtttgaaatggttataagagctttgtcttcaaggatttttatcccactag |
6140314 |
T |
|
| Q |
114 |
ttgcattgaaaccaaaggcatcaagtatccttgtgacgatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatttccttctgtcgcca |
213 |
Q |
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|||||||| ||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6140315 |
ttgcattgtaaccataggcatctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatttccttctctcgcca |
6140414 |
T |
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| Q |
214 |
tgataatccattataacttgcttttagcactttttgaa |
251 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |
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| T |
6140415 |
tgataatccattataacttgctcttagcactttttgaa |
6140452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 31 - 251
Target Start/End: Original strand, 6045702 - 6045922
Alignment:
| Q |
31 |
ttgtagtaagtcgtgcatttgtattctactgttgtttgaaatggttataagagttttatcttcgaggatttcaatcccactagttgcattgaaaccaaag |
130 |
Q |
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||||||||||||||||||||||||| || | | | |||||| || ||||||| ||||||||| ||| | | || ||||| | |||||||||||| || |
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| T |
6045702 |
ttgtagtaagtcgtgcatttgtattatattatcatatgaaatagtgataagagctttatcttcaagggtgactattccactggcagcattgaaaccacag |
6045801 |
T |
|
| Q |
131 |
gcatcaagtatccttgtgacgatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatttccttctgtcgccatgataatccattataac |
230 |
Q |
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||||| ||||| ||||| || | |||| | |||||| ||||||||||||| ||||| |||| |||||||||||| | ||| || |||||||||||| | |
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| T |
6045802 |
gcatctagtattcttgtcacaaaatctcttttttcatctttgaaaaagaacgcaatatctaaaaacatttccttttctcggactgttaatccattatagc |
6045901 |
T |
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| Q |
231 |
ttgcttttagcactttttgaa |
251 |
Q |
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|| || ||| ||||| ||||| |
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| T |
6045902 |
ttactcttaacacttcttgaa |
6045922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 6124571 - 6124403
Alignment:
| Q |
38 |
aagtcgtgcatttgtattctactgttgtttgaaatggttataagagttttatcttcgaggatttcaatcccactagttgcattgaaaccaaaggcatcaa |
137 |
Q |
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||||| |||||||||||| | ||| ||||||||||| ||||||| |||||||| ||||| | || |||||||| |||| || ||| | ||||| | |
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| T |
6124571 |
aagtcatgcatttgtattttgttgtcatttgaaatggtgataagagctttatctttaaggatatgtattccactagtagcatcaaagccacaagcatcta |
6124472 |
T |
|
| Q |
138 |
gtatccttgtgacgatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatttccttct |
206 |
Q |
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| T |
6124471 |
gtatacttgtaacaaaatctttattttcatctttgaaaaagaatgcaatgtctagaaacatttctttct |
6124403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 6061931 - 6062125
Alignment:
| Q |
14 |
atatcaaaggccaacttttgtagtaagtcgtgcatttgtattctactgttgtttgaaatggttataagagttttatcttcgaggatttcaatcccactag |
113 |
Q |
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||||| || ||||| | |||||||||||| |||||||||||||| || | |||||||| || ||||||| |||||||| ||| | || || |||| |
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| T |
6061931 |
atatcgaaagccaattgttgtagtaagtcatgcatttgtattctgttggtctttgaaattgtaataagagctttatctttaaggctctctattccaccga |
6062030 |
T |
|
| Q |
114 |
ttgcattgaaaccaaaggcatcaagtatccttgtgacgatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatttccttctgt |
208 |
Q |
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||||| ||||||| | |||||||||||||| | || | |||||| |||||| |||||||||||||||||| ||| ||||||||||| |||||| |
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| T |
6062031 |
ttgcactgaaaccgcatgcatcaagtatcctgataacaaaatctttattttcatctttgaaaaagaatgcaacgtcaagaaacatttctttctgt |
6062125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 204
Target Start/End: Original strand, 6042066 - 6042239
Alignment:
| Q |
31 |
ttgtagtaagtcgtgcatttgtattctactgttgtttgaaatggttataagagttttatcttcgaggatttcaatcccactagttgcattgaaaccaaag |
130 |
Q |
| |
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||||||||||||||||||||||||| || | | | |||||| || ||||||| ||||||||| ||| | | || ||||| | |||||||||||| || |
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| T |
6042066 |
ttgtagtaagtcgtgcatttgtattatattatcatatgaaatagtgataagagctttatcttcaagggtgactattccactggcagcattgaaaccacag |
6042165 |
T |
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| Q |
131 |
gcatcaagtatccttgtgacgatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatttcctt |
204 |
Q |
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||||| ||||| ||||| || | |||| | |||||| ||||||||||||| ||||| |||| |||||||||||| |
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| T |
6042166 |
gcatctagtattcttgtcacaaaatctcttttttcatctttgaaaaagaacgcaatatctaaaaacatttcctt |
6042239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 6087124 - 6087295
Alignment:
| Q |
29 |
ttttgtagtaagtcgtgcatttgtattctactgttgtttgaaatggttataagagttttatcttcgaggatttcaatcccactagttgcattgaaaccaa |
128 |
Q |
| |
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||||||||||| || ||||||||||| || || || ||||||| |||| ||||| ||| ||||| ||||| | || |||||| | |||||||||||| |
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| T |
6087124 |
ttttgtagtaaatcatgcatttgtatcctgttgctgcttgaaattgttacaagagctttttcttcaaggatctgtattccactactagcattgaaaccac |
6087223 |
T |
|
| Q |
129 |
aggcatcaagtatccttgtgacgatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacattt |
200 |
Q |
| |
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||| |||||||||| |||| | |||||| |||||| |||||||||||||||| |||| |||||||||| |
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| T |
6087224 |
ttgcactaagtatccttatgacaaaatctttattttcatctttgaaaaagaatgcgatgttcagaaacattt |
6087295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 6057108 - 6057148
Alignment:
| Q |
23 |
gccaacttttgtagtaagtcgtgcatttgtattctactgtt |
63 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||| |
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| T |
6057108 |
gccatcttttgtagtaagtcgtgcatttgtattctattgtt |
6057148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0350 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0350
Description:
Target: scaffold0350; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 16533 - 16573
Alignment:
| Q |
23 |
gccaacttttgtagtaagtcgtgcatttgtattctactgtt |
63 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||| |
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| T |
16533 |
gccatcttttgtagtaagtcgtgcatttgtattctattgtt |
16573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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