View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2292_low_3 (Length: 482)
Name: NF2292_low_3
Description: NF2292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2292_low_3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 30 - 473
Target Start/End: Complemental strand, 17274420 - 17273977
Alignment:
| Q |
30 |
gatatgttattatgaagtaaatattagtgtttaaaatcgaaatgaatctaaagnnnnnnnaatgcttatgaatctaaaggttaaataggtagagttttga |
129 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17274420 |
gatatgttattatgaagtaaatattagtgtttaaaatcgaaatgaatctaaagttttttttatgcttatgaatctaaaggttaaataggtagagttttga |
17274321 |
T |
|
| Q |
130 |
gtcaatattctctatggttcaattagttgaatagttcaattgcaattttatttatattcaaacaatttaatcaatttaagtcaaaacaaaaactaatcaa |
229 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17274320 |
gtcaatattctctatggttcaattacttgaatagttcgattacaattttattcatattcaaacaatttaatcaatttaagtcaaaacaaaaattaatcaa |
17274221 |
T |
|
| Q |
230 |
ttgaaccataattaggaggtctggttagtttaaaatctaattcaattctaaaaacattagttaataaatttttgcctgtaaaaatgatgtaaacacaatt |
329 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
17274220 |
ttgaaccataactaggaggtctaattagtttaaaatctaattcaattttaaaaacattagttaataaatttttgcctttaaaaattatgtaaacacaatt |
17274121 |
T |
|
| Q |
330 |
agcataatttataattttatgatttattgattgagataacaaaatatcttatagacttgccaaaactcttgtttgacaataatttttatcgtgtatattt |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||| |
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| T |
17274120 |
agcataatttataattttatgatttattgattgagataacaaaatatcttatagacttaccaaaactcttgtttgacaattctttttatcgtctatattt |
17274021 |
T |
|
| Q |
430 |
caggtccaaaaatatgaagggaatgcgcaacaatggagaataat |
473 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17274020 |
caggtccaaaaatatgaagggaatgcgcaacaatggagaataat |
17273977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 30 - 473
Target Start/End: Complemental strand, 17290581 - 17290140
Alignment:
| Q |
30 |
gatatgttattatgaagtaaatattagtgtttaaaatcgaaatgaatctaaagnnnnnnnaatgcttatgaatctaaaggttaaataggtagagttttga |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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|
| T |
17290581 |
gatatgttattatgaagtaaatattagtgtttaaaatcgaaatgaatctaaagttttttta-tgcttatgaatctaaaggttaaataggtagagttttga |
17290483 |
T |
|
| Q |
130 |
gtcaatattctctatggttcaattagttgaatagttcaattgcaattttatttatattcaaacaatttaatcaatttaagtcaaaacaaaaactaatcaa |
229 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
17290482 |
gtcaatattctctatggttcaattacttgaatagttcgattgcaattttattcatattcaaacaatttaatcaatttaagtcaaaataaaaattaatcaa |
17290383 |
T |
|
| Q |
230 |
ttgaaccataattaggaggtctggttagtttaaaatctaattcaattctaaaa---acattagttaataaatttttgcctgtaaaaatgatgtaaacaca |
326 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| ||||||||||| |
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|
| T |
17290382 |
ttgaaccataactaggaggtctaattactttaaaatctaattcaattctaaaatgtacattaggtaataattttttgcctgtaaaaattatgtaaacaca |
17290283 |
T |
|
| Q |
327 |
attagcataatttataattttatgatttattgattgagataacaaaatatcttatagacttgccaaaactcttgtttgacaataatttttatcgtgtata |
426 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
17290282 |
attaccataatttataattttatgatttattgattgagataacaaaatatcttatagacttgccaaaactc----ttgacaataatttttatcgtgtata |
17290187 |
T |
|
| Q |
427 |
tttcaggtccaaaaatatgaagggaatgcgcaacaatggagaataat |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17290186 |
tttcaggtccaaaaatatgaagggaatgcgcaacaatggagaataat |
17290140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 316 - 473
Target Start/End: Complemental strand, 17307000 - 17306843
Alignment:
| Q |
316 |
atgtaaacacaattagcataatttataattttatgatttattgattgagataacaaaatatcttatagacttgccaaaactcttgtttgacaataatttt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
17307000 |
atgtaaacacaattagcataatttataattttatgatttattgattgagataacaaaatatcttatagacttaccaaaactcttgtttgacaataatttt |
17306901 |
T |
|
| Q |
416 |
tatcgtgtatatttcaggtccaaaaatatgaagggaatgcgcaacaatggagaataat |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
17306900 |
tatcgtgtatatttcaggtccaaaaatatgaagggaatgcgcaacaatgaagaataat |
17306843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 17307114 - 17306998
Alignment:
| Q |
30 |
gatatgttattatgaagtaaatattagtgtttaaaatcgaaatgaatctaaag-nnnnnnnaatgcttatgaatctaaaggttaaataggtagagttttg |
128 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17307114 |
gatatattattatgaagtaaatattagtgtttaaaatcgaaatgaatctaaagtttttttttatgcttatgaatctaaaggttaaataggtagagtttta |
17307015 |
T |
|
| Q |
129 |
agtcaatattctctatg |
145 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
17307014 |
agtcaatatcctctatg |
17306998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 473
Target Start/End: Original strand, 19017170 - 19017299
Alignment:
| Q |
345 |
tttatgatttattgattgagataacaaaatatcttatagacttgccaaaactcttgtttgacaataatttttatcgtgtatatttcaggtccaaaaatat |
444 |
Q |
| |
|
||||||||||||| ||| | |||| ||||||| |||||||||||||||||||||||||| |||||| ||||| | ||| ||||| ||||| |||||||| |
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|
| T |
19017170 |
tttatgatttattaattaacataaaaaaatatattatagacttgccaaaactcttgtttaacaatattttttgtgatgtgtattttaggtcaaaaaatat |
19017269 |
T |
|
| Q |
445 |
gaagggaa-tgcgcaacaatggagaataat |
473 |
Q |
| |
|
||||| || ||| || |||||||||||||| |
|
|
| T |
19017270 |
gaaggaaattgcacatcaatggagaataat |
19017299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 316 - 445
Target Start/End: Original strand, 18805654 - 18805784
Alignment:
| Q |
316 |
atgtaaacacaattagcataatttataattttatgatttattgattgagat-aacaaaatatcttatagacttgccaaaactcttgtttgacaataattt |
414 |
Q |
| |
|
||||||| ||||||||||||| || ||| ||||||||||||||| || | || |||||||||||||| ||||| | |||||||||||||||||| ||| |
|
|
| T |
18805654 |
atgtaaatacaattagcataacttctaagtttatgatttattgaccgacacgaaaaaaatatcttatagtcttgcaacaactcttgtttgacaatatttt |
18805753 |
T |
|
| Q |
415 |
ttatcgtgtatatttcaggtccaaaaatatg |
445 |
Q |
| |
|
|| | |||||||||| ||||| ||||||||| |
|
|
| T |
18805754 |
ttgtggtgtatattttaggtcaaaaaatatg |
18805784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 317 - 445
Target Start/End: Original strand, 18827868 - 18827998
Alignment:
| Q |
317 |
tgtaaacacaattagcataatttataattttatgatttattgattgagat--aacaaaatatcttatagacttgccaaaactcttgtttgacaataattt |
414 |
Q |
| |
|
|||||| ||| ||||||||| || ||| | |||||||||||||| || || || ||||||||||| |||||||| |||||||||||||||||||| || |
|
|
| T |
18827868 |
tgtaaatacatttagcataacttctaagtgtatgatttattgatcgacatgaaaaaaaatatcttacagacttgcaaaaactcttgtttgacaatatatt |
18827967 |
T |
|
| Q |
415 |
ttatcgtgtatatttcaggtccaaaaatatg |
445 |
Q |
| |
|
|| | |||||| ||| |||| ||||||||| |
|
|
| T |
18827968 |
ttgtggtgtatgttttaggtaaaaaaatatg |
18827998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 435
Target Start/End: Complemental strand, 15684958 - 15684842
Alignment:
| Q |
319 |
taaacacaattagcataa-tttataattttatgatttattgattgagataacaaaatatcttatagacttgccaaaactcttgtttgacaataattttta |
417 |
Q |
| |
|
|||| ||||||| ||||| |||||| ||||||| |||||||||||| || | ||| ||| |||||||| | ||||||| ||||||||| ||| ||| | |
|
|
| T |
15684958 |
taaatacaattatcataactttata-ttttatggtttattgattgacatgaaaaactatgttatagacataccaaaacctttgtttgaccatagtttctg |
15684860 |
T |
|
| Q |
418 |
tcgtgtatatttcaggtc |
435 |
Q |
| |
|
| |||||||||| ||||| |
|
|
| T |
15684859 |
ttgtgtatattttaggtc |
15684842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 140 - 473
Target Start/End: Complemental strand, 18652774 - 18652437
Alignment:
| Q |
140 |
tctatggttcaattagttgaatagttcaattgcaattttatttatattcaaacaatttaatcaatttaagtcaaaac-----aaaaactaatcaattgaa |
234 |
Q |
| |
|
||||||||||||| | |||||||||| |||||||||||||| |||||||||||||||||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
18652774 |
tctatggttcaatgacttgaatagtttgattgcaattttattcatattcaaacaatttaatcaatttgagacaaaaataaataaaaactaatcaattgaa |
18652675 |
T |
|
| Q |
235 |
ccataattaggaggtctggttagtttaaaatctaattcaattctaaaaacattagttaataaatttttgcctgtaaaaatgatgtaaacacaattagcat |
334 |
Q |
| |
|
|||||| |||||||||| | |||| ||||||||||| ||||||||||||||||| ||||||| ||||| |||||||||| ||||||||||||||||||| |
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|
| T |
18652674 |
ccataactaggaggtctaataagttcaaaatctaatttaattctaaaaacattagctaataaacttttgtctgtaaaaat-atgtaaacacaattagcat |
18652576 |
T |
|
| Q |
335 |
aatttataattttatgatttattgattgagataacaaaatatcttatagacttgccaaaactcttgtttgacaataatttttatcgtgtatatttcaggt |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
18652575 |
aatttataattttatgatttattgattgagataacaaaatatcttttagacttgccagaactcttgtttgtcaataatttttatcatgtatatttcaggt |
18652476 |
T |
|
| Q |
435 |
ccaaaaatatgaagggaatgcgcaacaatggagaataat |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18652475 |
ccaaaaatatgaagggaatgcgcaacaatggagaataat |
18652437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 18652820 - 18652771
Alignment:
| Q |
30 |
gatatgttattatgaagtaaatattagtgtttaaaatcgaaatgaatcta |
79 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18652820 |
gatatgttattatgaagtaaatattagggtttaaaatcgaaatgaatcta |
18652771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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