View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2292_low_30 (Length: 228)
Name: NF2292_low_30
Description: NF2292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2292_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 2097139 - 2097289
Alignment:
| Q |
7 |
aaaacatgctttctcaaaaacaatttatttatttgcttatagaaacttataattgtaacagttgtaattatgactattgagtaatggattttaacacaca |
106 |
Q |
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| T |
2097139 |
aaaacatgctttctcaaaaacaatttatttatttgcttatagaaacttataattgtaacagttgtaattatgactattgagtaatggattttaacacaca |
2097238 |
T |
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| Q |
107 |
caccccccagtacatattttct----cacacacataatttagtgcaatatatagtt |
158 |
Q |
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| T |
2097239 |
-----cccagtacatattttctctcacacacacataatttagtgcaatatatagtt |
2097289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 2097375 - 2097439
Alignment:
| Q |
164 |
caaattgaaatcctccataaagttttaacaatcatagttaactctaaagttttatatcataattt |
228 |
Q |
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| T |
2097375 |
caaattgaaatcctccataaagttttaacaatcatagttaactctaaagttttatatcataattt |
2097439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 2106099 - 2106161
Alignment:
| Q |
164 |
caaattgaaatcctccataaagttttaacaatcatagttaactctaaagttttatatcataat |
226 |
Q |
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| T |
2106099 |
caaattgaaatccactataaagttttaacagtcatagttaactctaaagttttatatcataat |
2106161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 2136648 - 2136595
Alignment:
| Q |
164 |
caaattgaaatcctccataaagttttaacaatcatagttaactctaaagtttta |
217 |
Q |
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| T |
2136648 |
caaattgaaatcctctataaagtcttaacaatcatatttaactctaaagtttta |
2136595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 26586557 - 26586529
Alignment:
| Q |
164 |
caaattgaaatcctccataaagttttaac |
192 |
Q |
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| T |
26586557 |
caaattgaaatcctccataaagttttaac |
26586529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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