View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2292_low_39 (Length: 202)
Name: NF2292_low_39
Description: NF2292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2292_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 7e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 42019406 - 42019519
Alignment:
| Q |
13 |
acccatagtacatagaaggaagaaccttattcataaaataatacagaggaaggaaccttgcatgattaggtggtgacaaacaactcaatgttagagaaga |
112 |
Q |
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| T |
42019406 |
acccatagaacatagaaggaagaaccttattcataaaataatacagaggaaggaactttgcatgattaggtggtgacaaacaacccaatgttagagaaga |
42019505 |
T |
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| Q |
113 |
tgagacatgtgacc |
126 |
Q |
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| T |
42019506 |
tgagacatgtgacc |
42019519 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 1252616 - 1252661
Alignment:
| Q |
13 |
acccatagtacatagaaggaagaacc-ttattcataaaataataca |
57 |
Q |
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| T |
1252616 |
acccatagaacatagaaggaagaacctttattcataaaataataca |
1252661 |
T |
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