View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2292_low_7 (Length: 457)

Name: NF2292_low_7
Description: NF2292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2292_low_7
NF2292_low_7
[»] chr2 (9 HSPs)
chr2 (28-309)||(8717496-8717757)
chr2 (294-450)||(8717777-8717933)
chr2 (76-141)||(8996792-8996857)
chr2 (81-151)||(39792136-39792206)
chr2 (81-160)||(20555282-20555361)
chr2 (76-142)||(25903726-25903792)
chr2 (76-151)||(41205523-41205598)
chr2 (76-149)||(45065615-45065688)
chr2 (81-149)||(9152424-9152492)
[»] chr5 (11 HSPs)
chr5 (76-159)||(5240247-5240330)
chr5 (37-148)||(29486530-29486640)
chr5 (78-149)||(42364258-42364329)
chr5 (76-149)||(21032563-21032636)
chr5 (78-149)||(21032570-21032641)
chr5 (76-163)||(892587-892673)
chr5 (76-150)||(5240262-5240336)
chr5 (89-159)||(7604209-7604279)
chr5 (76-149)||(42364251-42364324)
chr5 (81-137)||(5004005-5004061)
chr5 (119-151)||(8567955-8567987)
[»] chr4 (18 HSPs)
chr4 (40-161)||(15794764-15794885)
chr4 (76-149)||(22720542-22720615)
chr4 (76-149)||(22768180-22768253)
chr4 (76-151)||(41622126-41622201)
chr4 (76-149)||(22720537-22720610)
chr4 (87-159)||(30403970-30404042)
chr4 (76-159)||(52673634-52673717)
chr4 (76-149)||(2411875-2411948)
chr4 (86-154)||(5924525-5924593)
chr4 (76-148)||(22768176-22768248)
chr4 (88-144)||(30990628-30990684)
chr4 (76-149)||(49083072-49083141)
chr4 (89-148)||(15794796-15794855)
chr4 (81-159)||(52760264-52760342)
chr4 (76-149)||(41622133-41622206)
chr4 (86-114)||(5418710-5418738)
chr4 (86-150)||(42299290-42299354)
chr4 (111-159)||(44626183-44626231)
[»] chr6 (14 HSPs)
chr6 (76-159)||(29938637-29938719)
chr6 (78-119)||(14093119-14093160)
chr6 (78-142)||(3989548-3989612)
chr6 (79-159)||(7632809-7632889)
chr6 (88-150)||(3257740-3257802)
chr6 (76-149)||(26388227-26388300)
chr6 (77-153)||(8051005-8051081)
chr6 (78-149)||(33123049-33123120)
chr6 (81-163)||(8030356-8030437)
chr6 (76-149)||(1158285-1158358)
chr6 (76-149)||(14589579-14589652)
chr6 (76-149)||(29938652-29938724)
chr6 (116-149)||(33123042-33123075)
chr6 (81-149)||(20890157-20890225)
[»] chr7 (5 HSPs)
chr7 (50-159)||(4132397-4132506)
chr7 (76-163)||(4132404-4132491)
chr7 (76-159)||(41115586-41115669)
chr7 (76-149)||(7107670-7107743)
chr7 (94-159)||(21387630-21387695)
[»] chr3 (13 HSPs)
chr3 (76-147)||(48748541-48748612)
chr3 (76-149)||(35239684-35239757)
chr3 (86-142)||(32186935-32186991)
chr3 (76-148)||(35239689-35239761)
chr3 (91-150)||(26389443-26389502)
chr3 (77-160)||(42225586-42225669)
chr3 (78-159)||(53711899-53711979)
chr3 (76-159)||(29497381-29497464)
chr3 (76-151)||(50334957-50335032)
chr3 (76-114)||(30082257-30082295)
chr3 (77-159)||(32186910-32186992)
chr3 (76-149)||(22003836-22003909)
chr3 (76-149)||(22011353-22011426)
[»] chr1 (11 HSPs)
chr1 (76-159)||(43731155-43731238)
chr1 (76-150)||(897047-897121)
chr1 (87-159)||(14773744-14773816)
chr1 (76-151)||(8352164-8352239)
chr1 (78-159)||(31635783-31635864)
chr1 (93-150)||(39969796-39969854)
chr1 (81-159)||(50105681-50105759)
chr1 (76-150)||(51612947-51613021)
chr1 (111-160)||(6793618-6793667)
chr1 (118-159)||(26468315-26468356)
chr1 (83-151)||(1599060-1599128)
[»] chr8 (15 HSPs)
chr8 (76-150)||(325248-325322)
chr8 (81-159)||(27939032-27939110)
chr8 (76-149)||(6197862-6197935)
chr8 (86-159)||(28205819-28205892)
chr8 (76-150)||(33837620-33837694)
chr8 (76-149)||(6197857-6197930)
chr8 (82-159)||(38779254-38779330)
chr8 (410-449)||(23442864-23442903)
chr8 (86-149)||(13325126-13325185)
chr8 (81-150)||(29358656-29358725)
chr8 (86-151)||(39199562-39199626)
chr8 (76-149)||(41915634-41915707)
chr8 (118-159)||(44577193-44577234)
chr8 (219-259)||(23443489-23443529)
chr8 (86-138)||(38764395-38764447)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 7e-84; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 28 - 309
Target Start/End: Original strand, 8717496 - 8717757
Alignment:
Q  28 catatatattctctccaatcactattataagcaaaatttaannnnnnn-agatacattaaataattaatgtatttagtctttattatatactagatacat 126  Q
    |||||||| | ||||| |||||||||||||| |||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8717496 catatatactttctccgatcactattataagtaaaatttaattttttttagatacattaaataattaatgtatttagtctttattatatactagatacat 8717595  T
Q  127 tatttattcaatgtatttaaaaaattaaatttttgctnnnnnnnntgaaatttaacttataataatgatcggagagaatatatacgcaataagaattttc 226  Q
    |||||||||||||||||||||||||||||                     |||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  8717596 tatttattcaatgtatttaaaaaattaaa---------------------tttaacttataatagtgatcggagagaatacatacgcaataagaattttc 8717674  T
Q  227 attaccaccaaaatttcctaattaacatgcttataaaacttcctaaatcattaaaattatgggctacacgtcttttaataagt 309  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8717675 attaccaccaaaattttctaattaacatgcttataaaacttcctaaatcattaaaattatgggctacacgtcttttaataagt 8717757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 294 - 450
Target Start/End: Original strand, 8717777 - 8717933
Alignment:
Q  294 acgtcttttaataagtgaattagtctcattgaaagacgtgtaagtattaagctcatggaatgtgaccaagtaaaagagttaacttattaaaagagtaaat 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8717777 acgtcttttaataagtgaattagtctcattgaaagacgtgtaagtattaagctcatggaatgtgaccaagtaaaagagttaacttattaaaagagtaaat 8717876  T
Q  394 gagtcacttatttaataagataacacatctaacggtaccattatctcatattgttgg 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8717877 gagtcacttatttaataagataacacatctaacggtaccattatctcattttgttgg 8717933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 8996857 - 8996792
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgta 141  Q
    ||||||||| |||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||    
T  8996857 agatacattgaataatcaatgtatatagtctttattatagactagatacattaattattcaatgta 8996792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 39792136 - 39792206
Alignment:
Q  81 cattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaat 151  Q
    ||||||||||||||||||| |||| ||||||||| | ||||||||||| ||||||| ||||| ||||||||    
T  39792136 cattaaataattaatgtatctagtttttattatagattagatacattaattattcattgtatctaaaaaat 39792206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 20555361 - 20555282
Alignment:
Q  81 cattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaattttt 160  Q
    ||||| |||| |||||||||| |||| |||| || || |||||||| | ||||||||||||| ||||||||||| |||||    
T  20555361 cattacataaataatgtatttggtctatattctagacaagatacatcaattattcaatgtatctaaaaaattaatttttt 20555282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 25903792 - 25903726
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtat 142  Q
    ||||||||| |||||||||||||| || |||| ||| || || |||||||||| |||||||||||||    
T  25903792 agatacatttaataattaatgtatctactcttcattgtaaacgagatacattaattattcaatgtat 25903726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 41205598 - 41205523
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaat 151  Q
    ||||| ||||||||||| |||||||| || | |||| | |||||||||||| | ||||||||| ||| ||||||||    
T  41205598 agatatattaaataatttatgtatttggtttatattttttactagatacataaattattcaatatatctaaaaaat 41205523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 45065688 - 45065615
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||||||||||||| ||||||||| | |  ||| || |||||||||||   ||||||||||||| ||||||    
T  45065688 agatacattaaataatttatgtatttaatttagattctagactagatacatacattattcaatgtatctaaaaa 45065615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 9152424 - 9152492
Alignment:
Q  81 cattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    |||||||||||| |||||||| |||| |||| || ||||||||||| | ||| |||||| || ||||||    
T  9152424 cattaaataattgatgtatttggtctatattttagactagatacatcaattactcaatgaatctaaaaa 9152492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 5240330 - 5240247
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    ||||||||| |||||||||||||| ||  |||||||||||||||||||||||| ||||||||||||| |||||||| |||||||    
T  5240330 agatacattgaataattaatgtatctaaactttattatatactagatacattaattattcaatgtatctaaaaaatcaaatttt 5240247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 148
Target Start/End: Complemental strand, 29486640 - 29486530
Alignment:
Q  37 tctctccaatcactattataagcaaaatttaannnnnnnagatacattaaataattaatgtatttagtctttattatatactagatacattatttattca 136  Q
    ||||||| |||||||||||||||||||| | |       ||||||||| |||||||||| |||||||||||||| ||| ||||||||||||| |||||||    
T  29486640 tctctccgatcactattataagcaaaatctgacttttt-agatacattgaataattaatatatttagtctttatcataaactagatacattaattattca 29486542  T
Q  137 atgtatttaaaa 148  Q
    |||||| |||||    
T  29486541 atgtatctaaaa 29486530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 42364258 - 42364329
Alignment:
Q  78 atacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||| |||||||||||||| |||||||||||||| |||||||||  || ||||||||||||| ||||||    
T  42364258 atacattgaataattaatgtatgtagtctttattataaactagataccctaattattcaatgtatctaaaaa 42364329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 21032636 - 21032563
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||| ||| |||||||||||||| |||||||||||||| |||  |||||||| ||||||||||||| ||||||    
T  21032636 agatatattgaataattaatgtatctagtctttattatagactgaatacattaattattcaatgtatataaaaa 21032563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 21032570 - 21032641
Alignment:
Q  78 atacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||| ||||||||||||||| ||||| || || | ||||||||||||| ||||||||| ||| ||||||    
T  21032570 atacattgaataattaatgtattcagtctataataaagactagatacattaattattcaatatatctaaaaa 21032641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 163
Target Start/End: Original strand, 892587 - 892673
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttttgct 163  Q
    |||| |||| ||||||||||||||||  ||| || ||||||||||||||||   |||||||||| ||||  |||| ||||||||||||    
T  892587 agattcattgaataattaatgtatttgttctatactatatactagatacatccgttattcaatgaattt-taaaagtaaatttttgct 892673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 5240262 - 5240336
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaa 150  Q
    ||||||||| |||||||||||||| |||| | || || |   ||||||||||| ||||||||||||| |||||||    
T  5240262 agatacattgaataattaatgtatctagtatataataaagtttagatacattaattattcaatgtatctaaaaaa 5240336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 7604279 - 7604209
Alignment:
Q  89 aattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    |||||||| ||||||||||||||||| ||| ||| ||||| ||||||| | ||| |||||| | |||||||    
T  7604279 aattaatggatttagtctttattatagacttgatgcattacttattcagtatatctaaaaagtgaaatttt 7604209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 42364324 - 42364251
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||||| ||||||||  |||| |||| | || || | |||| |||||||| ||||||||||||||||||||    
T  42364324 agatacattgaataattagggtatctagtttataataaagactacatacattaattattcaatgtatttaaaaa 42364251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 5004005 - 5004061
Alignment:
Q  81 cattaaataattaatgtatttagtctttattatatactagatacattatttattcaa 137  Q
    |||| ||||| | ||||||||||||| ||||||| | ||||||||||| ||||||||    
T  5004005 cattgaataactgatgtatttagtctatattataaattagatacattaattattcaa 5004061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 8567955 - 8567987
Alignment:
Q  119 agatacattatttattcaatgtatttaaaaaat 151  Q
    |||||||||| ||||||||||||||||||||||    
T  8567955 agatacattaattattcaatgtatttaaaaaat 8567987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 40 - 161
Target Start/End: Original strand, 15794764 - 15794885
Alignment:
Q  40 ctccaatcactattataagcaaaatttaannnnnnnagatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatg 139  Q
    ||||||||||||||||||| ||||||| |       ||||||||| |||||||||||||| | |||||||||||| |||| |||||||| || ||||||     
T  15794764 ctccaatcactattataagtaaaatttcattgttttagatacattgaataattaatgtatctggtctttattatagactaaatacattaattcttcaata 15794863  T
Q  140 tatttaaaaaattaaatttttg 161  Q
    |||| |||||| |||| |||||    
T  15794864 tattcaaaaaaataaaattttg 15794885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 22720542 - 22720615
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||||| |||||||||||||| |||||||||||||| |||  |||||||| ||||||||||||| ||||||    
T  22720542 agatacattgaataattaatgtatctagtctttattatagactgcatacattaattattcaatgtatctaaaaa 22720615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 22768180 - 22768253
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||||| |||||||||||||| |||||||||||||| |||  || ||||| ||||||||||||| ||||||    
T  22768180 agatacattgaataattaatgtatctagtctttattatagactgcattcattaattattcaatgtatctaaaaa 22768253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 41622201 - 41622126
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaat 151  Q
    ||||||||| ||| |||||||||| |||||||||||||| ||||  |||| || ||||||||||||| ||||||||    
T  41622201 agatacattgaatgattaatgtatctagtctttattatagactacgtacactaattattcaatgtatctaaaaaat 41622126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 22720610 - 22720537
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||||| ||||||||||||||  ||||| || || | ||||||||||||| ||||||||||||| ||||||    
T  22720610 agatacattgaataattaatgtatgcagtctataataaagactagatacattaattattcaatgtatctaaaaa 22720537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 30403970 - 30404042
Alignment:
Q  87 ataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    |||||||||||||||||||||||||| | || | ||| |||| || |||||| |||||||||||| |||||||    
T  30403970 ataattaatgtatttagtctttattacaaacaacataaattaattgttcaatatatttaaaaaatgaaatttt 30404042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 52673634 - 52673717
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    ||||| ||| |||||||||||||| |||| |||||||||   | ||||||||| ||||||||||||| |||||| | |||||||    
T  52673634 agatatattgaataattaatgtatctagtttttattatagtatggatacattaattattcaatgtatctaaaaagtgaaatttt 52673717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 2411948 - 2411875
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||||||||||||| ||||||||||| |  ||| |  |||||||||||   ||||||||||||||||||||    
T  2411948 agatacattaaataatttatgtatttagtttagattcttgactagatacatacattattcaatgtatttaaaaa 2411875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 5924593 - 5924525
Alignment:
Q  86 aataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaa 154  Q
    ||||| |||||||| ||||  ||| |||| | ||||||||||||||||| |||| ||||||||||||||    
T  5924593 aataaataatgtatgtagttcttaatatagattagatacattatttattgaatgaatttaaaaaattaa 5924525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 22768248 - 22768176
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaa 148  Q
    ||||||||| ||||||||||| ||  ||||| || || | ||||||||||||| ||||||||||||| |||||    
T  22768248 agatacattgaataattaatgaatgcagtctataataaagactagatacattaattattcaatgtatctaaaa 22768176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 30990684 - 30990628
Alignment:
Q  88 taattaatgtatttagtctttattatatactagatacattatttattcaatgtattt 144  Q
    ||||| ||||||||||||| ||||| | ||||||||||||| |||||||||| ||||    
T  30990684 taattgatgtatttagtctatattacaaactagatacattagttattcaatgaattt 30990628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 49083141 - 49083072
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    |||||||||||||||||||||||  || |||||||    |||||||||||||| |||||||||| || ||||||    
T  49083141 agatacattaaataattaatgtaactaatctttat----tactagatacattaattattcaatgcatctaaaaa 49083072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 15794855 - 15794796
Alignment:
Q  89 aattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaa 148  Q
    |||||||||||||||||| || || | || |||||||||| ||||||||||||| |||||    
T  15794855 aattaatgtatttagtctataataaagaccagatacattaattattcaatgtatctaaaa 15794796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 52760342 - 52760264
Alignment:
Q  81 cattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    |||||||||| | ||||||||||||  |||||||||||| ||||||   |||||||||  || |||||| |||||||||    
T  52760342 cattaaataacttatgtatttagtcaatattatatactaaatacatgtgttattcaataaatctaaaaagttaaatttt 52760264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 41622133 - 41622206
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||||| |||||||| ||||  |||||| || || | ||||||||||||| | ||||||||||| ||||||    
T  41622133 agatacattgaataattagtgtacgtagtctataataaagactagatacattaatcattcaatgtatctaaaaa 41622206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 114
Target Start/End: Original strand, 5418710 - 5418738
Alignment:
Q  86 aataattaatgtatttagtctttattata 114  Q
    |||||||||||||||||||||||||||||    
T  5418710 aataattaatgtatttagtctttattata 5418738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 42299354 - 42299290
Alignment:
Q  86 aataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaa 150  Q
    |||||||||||||||| || |||||| | || ||||| ||||| |||||||||| | ||||||||    
T  42299354 aataattaatgtatttggtttttattttgtattagatgcattaattattcaatgaacttaaaaaa 42299290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 44626231 - 44626183
Alignment:
Q  111 tatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    |||| ||||||||||||| ||||||||||||| | |||||| |||||||    
T  44626231 tatagactagatacattagttattcaatgtatctgaaaaataaaatttt 44626183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 29938719 - 29938637
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    ||||||||| |||||||||||||| ||||||||||| |||||||||||||||| ||||| ||||||| |||||| | |||||||    
T  29938719 agatacattgaataattaatgtatctagtctttattgtatactagatacattaattatt-aatgtatctaaaaagtgaaatttt 29938637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 14093119 - 14093160
Alignment:
Q  78 atacattaaataattaatgtatttagtctttattatatacta 119  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  14093119 atacattaaataattaatgtatctagtctttattatatacta 14093160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 3989548 - 3989612
Alignment:
Q  78 atacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtat 142  Q
    |||||| ||||||| ||||| | |||||||||||||| ||||||||||| | |||||||||||||    
T  3989548 atacataaaataatcaatgtttctagtctttattatagactagatacatcaattattcaatgtat 3989612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 7632809 - 7632889
Alignment:
Q  79 tacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    |||||| |||||| ||||||| |||||||||||||| ||  ||||||||| ||||||| ||||| |||||| |||| ||||    
T  7632809 tacattcaataatcaatgtatctagtctttattatagaccggatacattaattattcagtgtatctaaaaagttaagtttt 7632889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 3257740 - 3257802
Alignment:
Q  88 taattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaa 150  Q
    ||||||||||||||  ||||||||||| |||||||| |||| ||||| |||| ||||||||||    
T  3257740 taattaatgtatttgttctttattatagactagatatattaattattgaatgaatttaaaaaa 3257802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 26388227 - 26388300
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||| ||| |||||||||||||| || ||||||||||| |||  |||||||| ||||||||| ||| ||||||    
T  26388227 agatatattgaataattaatgtatctaatctttattatagactgaatacattaattattcaatatatataaaaa 26388300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 8051081 - 8051005
Alignment:
Q  77 gatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaatta 153  Q
    |||||||| ||||||||||||||||| ||    ||||| | || |||||||| ||||||||| ||||||||||||||    
T  8051081 gatacatttaataattaatgtatttaatcacatttatagattatatacattaattattcaatatatttaaaaaatta 8051005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 33123049 - 33123120
Alignment:
Q  78 atacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||| |||||||||||||| |||||||| ||||| ||| ||||| ||| ||||| | ||||| ||||||    
T  33123049 atacattgaataattaatgtatctagtcttttttatagacttgatacgttaattattaagtgtatctaaaaa 33123120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 8030356 - 8030437
Alignment:
Q  81 cattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttttgct 163  Q
    |||||||||| ||| |||| | ||||||||| || || | |||||||||||||| |||| |||||||| | ||||||||||||    
T  8030356 cattaaataaataacgtatgtggtctttattgtagacaacatacattatttattgaatgaatttaaaaga-taaatttttgct 8030437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 1158285 - 1158358
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    |||| |||| |||||||||||||||  |||| |||| || || | |||||| | ||||||||||||||||||||    
T  1158285 agattcattgaataattaatgtattcggtctatattctagaccaaatacatcaattattcaatgtatttaaaaa 1158358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 14589579 - 14589652
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||||| ||||||| |||||| |||||||||||||| ||  || | |||  ||||||||||||| ||||||    
T  14589579 agatacattgaataattcatgtatctagtctttattatagaccggacagattgattattcaatgtatctaaaaa 14589652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 29938652 - 29938724
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||||||| |||||||||||| |||| |  | || | ||||||||||||| ||||||||||||| ||||||    
T  29938652 agatacattaa-taattaatgtatctagtatacaataaagactagatacattaattattcaatgtatctaaaaa 29938724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 33123075 - 33123042
Alignment:
Q  116 actagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||||||||| ||||||||||||||||||||    
T  33123075 actagatacattaattattcaatgtatttaaaaa 33123042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 20890157 - 20890225
Alignment:
Q  81 cattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    |||||||||| |||||||||||||  | |||||||   ||||||| || | ||||||||||||||||||    
T  20890157 cattaaataactaatgtatttagttataattatatgtcagatacaataatcattcaatgtatttaaaaa 20890225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 4132397 - 4132506
Alignment:
Q  50 tattataagcaaaatttaannnnnnnagatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||||||||||||| |       ||||||||| |||||||||||||| |||| ||||||||| |||| ||||||||  |||||||||||| ||||||    
T  4132397 tattataagcaaaatttcacttttttagatacattgaataattaatgtatatagtatttattatagactaaatacattaaatattcaatgtatctaaaaa 4132496  T
Q  150 attaaatttt 159  Q
     |||| ||||    
T  4132497 gttaagtttt 4132506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 4132491 - 4132404
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttttgct 163  Q
    ||||||||| |||| |||||||||||||||| || || |||||| |||||||| ||||||||||||| ||||||| | || |||||||    
T  4132491 agatacattgaatatttaatgtatttagtctataataaatactatatacattaattattcaatgtatctaaaaaagtgaaattttgct 4132404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 41115586 - 41115669
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    ||||||||| || ||||||||||| || ||||||||||| | ||||||||||| ||||  ||||||| ||||||||||| ||||    
T  41115586 agatacattgaacaattaatgtatctaatctttattatagagtagatacattaattatgtaatgtatataaaaaattaagtttt 41115669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 7107670 - 7107743
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||||||||||||| |||||||| || |  ||| |  ||||||||||| | ||||||||||||| ||||||    
T  7107670 agatacattaaataatttatgtatttggtttagatttttgactagatacataaattattcaatgtatctaaaaa 7107743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 21387630 - 21387695
Alignment:
Q  94 atgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    |||||| ||||||||||||||||| | |||||| ||||||| |||| || |||||| | |||||||    
T  21387630 atgtatgtagtctttattatataccacatacatcatttattaaatgaatctaaaaagtaaaatttt 21387695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 48748541 - 48748612
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaa 147  Q
    ||||| |||||||||||||| |||||| | ||||||||| ||||||||||||| ||||||||| ||||||||    
T  48748541 agatatattaaataattaatatatttaatatttattataaactagatacattaattattcaatatatttaaa 48748612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 35239757 - 35239684
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||||| |||| ||||||||| |||||||||||||| |||  |||||||| ||||||||||||| ||||||    
T  35239757 agatacattgaatagttaatgtatctagtctttattatagacttaatacattaattattcaatgtatctaaaaa 35239684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 32186935 - 32186991
Alignment:
Q  86 aataattaatgtatttagtctttattatatactagatacattatttattcaatgtat 142  Q
    |||||||||||||| |||||||||||||| ||||||||||||| |||| ||||||||    
T  32186935 aataattaatgtatatagtctttattataaactagatacattaattatccaatgtat 32186991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 35239689 - 35239761
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaa 148  Q
    ||||||||| ||||||||||||||| ||||| || || | |||||||||||||  |||||||||||| |||||    
T  35239689 agatacattgaataattaatgtattaagtctataataaagactagatacattaactattcaatgtatctaaaa 35239761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 26389443 - 26389502
Alignment:
Q  91 ttaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaa 150  Q
    ||||||||| |||| ||||||||| ||||||||||||| ||||||||| ||||| |||||    
T  26389443 ttaatgtatctagtatttattatagactagatacattaattattcaatatattttaaaaa 26389502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 42225669 - 42225586
Alignment:
Q  77 gatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaattttt 160  Q
    |||||||||||||||| ||||||||||| |   ||||  |||||||||||   ||||||||||||| ||||||||||| |||||    
T  42225669 gatacattaaataatttatgtatttagtttaggttattgactagatacatacattattcaatgtatctaaaaaattaatttttt 42225586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 53711899 - 53711979
Alignment:
Q  78 atacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    |||| |||||||||||||||||||  |||||  |||| ||||||||| ||| ||||||||| ||| | ||||||||||||||    
T  53711899 atactttaaataattaatgtatttgatctttcatatagactagatacgttaattattcaatatatat-aaaaattaaatttt 53711979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 29497464 - 29497381
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    ||||||||| || ||||||| ||| ||||||||||| || |||  |||||||| ||| ||||||||| |||||| | |||||||    
T  29497464 agatacattgaacaattaatatatctagtctttattgtagactgaatacattaattagtcaatgtatctaaaaagtaaaatttt 29497381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 50334957 - 50335032
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaat 151  Q
    ||||||||| |||||||||||||| || |||||||||||   |  |||||||| ||||||||| ||| ||||||||    
T  50334957 agatacattgaataattaatgtatctaatctttattataggttgtatacattaattattcaatatatctaaaaaat 50335032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 30082257 - 30082295
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattata 114  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  30082257 agatacattgaataattaatgtttttagtctttattata 30082295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 32186992 - 32186910
Alignment:
Q  77 gatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    ||||||||  ||||||||||||| |||| | || || | |||| |||||||| |||||| ||||||||||||| | |||||||    
T  32186992 gatacattggataattaatgtatctagtttataataaagactatatacattaattattccatgtatttaaaaagtgaaatttt 32186910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 22003836 - 22003909
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||||| ||||||| || |||||||| |  ||| | |||||||||||| | ||||||||||||| ||||||    
T  22003836 agatacattgaataatttatatatttagtttagattctttactagatacataaattattcaatgtatctaaaaa 22003909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 22011353 - 22011426
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||||| ||||||| || |||||||| |  ||| | |||||||||||| | ||||||||||||| ||||||    
T  22011353 agatacattgaataatttatatatttagtttagattctttactagatacataaattattcaatgtatctaaaaa 22011426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 43731155 - 43731238
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    ||||||||| |||||||||||||| |||| ||||||| | | |||||||||||  |||||||||||| |||||||| |||||||    
T  43731155 agatacattcaataattaatgtatctagtttttattaaaaaatagatacattaactattcaatgtatctaaaaaatgaaatttt 43731238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 897047 - 897121
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaa 150  Q
    ||||||||| |||||||||||||||||||||| ||| || |   ||||||||| ||||||||||||| |||||||    
T  897047 agatacatttaataattaatgtatttagtcttcattgtaaatgggatacattaattattcaatgtatctaaaaaa 897121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 14773816 - 14773744
Alignment:
Q  87 ataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    ||||||||||||| |||||| ||||||| ||| |||||| || ||||||||| |||| ||||||| |||||||    
T  14773816 ataattaatgtatctagtctgtattatagactggatacaataattattcaatatattcaaaaaataaaatttt 14773744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 8352239 - 8352164
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaat 151  Q
    ||||| ||| ||||||||||||||||| ||| || || ||| ||||||||||| | ||||||||||| ||||||||    
T  8352239 agatatattgaataattaatgtatttattctataataaatattagatacattaatcattcaatgtatctaaaaaat 8352164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 31635783 - 31635864
Alignment:
Q  78 atacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    ||||||| |||||| ||||||||  ||  |||||||| |||||||| |||| ||||||||||||| |||||| | |||||||    
T  31635783 atacattgaataataaatgtattcggtgcttattatagactagatatattagttattcaatgtatctaaaaagtgaaatttt 31635864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 39969854 - 39969796
Alignment:
Q  93 aatgtatttagtctttattatatactagatacattatttattcaatgtat-ttaaaaaa 150  Q
    |||||||||||| ||||||||| | ||||||||| | ||||||||||||| ||||||||    
T  39969854 aatgtatttagtatttattataaattagatacatcaattattcaatgtatcttaaaaaa 39969796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 50105759 - 50105681
Alignment:
Q  81 cattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    ||||| ||||||||||||| |||| | ||||||| |  |||||||||  |||||||||| || ||||||||||| ||||    
T  50105759 cattagataattaatgtatctagtttatattatagatcagatacattgattattcaatgaatctaaaaaattaattttt 50105681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 51612947 - 51613021
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaa 150  Q
    ||||||||| ||||||||||||||   |||||| || || | |||||| |||| ||||||||||||| |||||||    
T  51612947 agatacattcaataattaatgtatccggtctttgttgtaaattagatatattaattattcaatgtatctaaaaaa 51613021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 6793667 - 6793618
Alignment:
Q  111 tatatactagatacattatttattcaatgtatttaaaaaattaaattttt 160  Q
    |||||||||  ||||||| |||||||||| |||||||||||||| |||||    
T  6793667 tatatactaagtacattaattattcaatgaatttaaaaaattaacttttt 6793618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 26468356 - 26468315
Alignment:
Q  118 tagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    ||||||||||| |||||||||||||||||||| | |||||||    
T  26468356 tagatacattaattattcaatgtatttaaaaagtgaaatttt 26468315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 1599128 - 1599060
Alignment:
Q  83 ttaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaat 151  Q
    |||||||| ||||||||||||||| || ||||||  |||||||||| | ||| |||| || ||||||||    
T  1599128 ttaaataactaatgtatttagtctataatatatatcagatacattaatcatttaatgaatctaaaaaat 1599060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 325248 - 325322
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaa 150  Q
    ||||||||| |||||||||||||| ||||||| ||| || || |||||||||| |||||||||||| ||||||||    
T  325248 agatacatttaataattaatgtatctagtcttcattgtaaacgagatacattaattattcaatgtacttaaaaaa 325322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 27939032 - 27939110
Alignment:
Q  81 cattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    |||| |||||| ||||||| |||||||||||||| ||| | ||||||  ||||||||||||| |||||||| |||||||    
T  27939032 cattgaataatcaatgtatctagtctttattatagactgggtacattcattattcaatgtatctaaaaaataaaatttt 27939110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 6197862 - 6197935
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    |||||||||||||| ||||||||| |||||||||| ||| | || |||||||| ||||| ||||||| ||||||    
T  6197862 agatacattaaatagttaatgtatctagtctttatcatagattaaatacattaattatttaatgtatctaaaaa 6197935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 28205892 - 28205819
Alignment:
Q  86 aataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    |||||||||||||| |||||||| ||||  ||  ||||||||| ||||||||||||| | ||||||||||||||    
T  28205892 aataattaatgtatctagtctttgttatggacatgatacattaattattcaatgtatctgaaaaattaaatttt 28205819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 33837620 - 33837694
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaa 150  Q
    ||||||||||||||||| ||| ||||||| |  ||| |  ||||||||||| | |||||||||||||||||||||    
T  33837620 agatacattaaataatttatgcatttagtttagattcttgactagatacataaattattcaatgtatttaaaaaa 33837694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 6197930 - 6197857
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||||||||||||||||||||||| ||| |  || | |||||||||||||  |||| ||||||| ||||||    
T  6197930 agatacattaaataattaatgtatttaatctatgataaagactagatacattaactatttaatgtatctaaaaa 6197857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 38779330 - 38779254
Alignment:
Q  82 attaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    |||||||||||||||||| |||| | ||| ||| | || ||||||||||||||||||  |||||||||||| ||||||    
T  38779330 attaaataattaatgtatctagtttatat-atagaatatatacattatttattcaataaatttaaaaaattgaatttt 38779254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 23442903 - 23442864
Alignment:
Q  410 aagataacacatctaacggtaccattatctcatattgttg 449  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  23442903 aagataacacatctaacggtaccataatctcattttgttg 23442864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 13325185 - 13325126
Alignment:
Q  86 aataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    |||||| ||||||||||||    |||||| ||||||||||||| ||||||||||||| ||||||    
T  13325185 aataatcaatgtatttagt----attataaactagatacattaattattcaatgtatctaaaaa 13325126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 29358656 - 29358725
Alignment:
Q  81 cattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaa 150  Q
    |||| |||||||||||||| ||| || || |||| |||| |||||| |||||| |||||||| |||||||    
T  29358656 cattgaataattaatgtatctagactataatataaactaaatacatcatttatacaatgtatctaaaaaa 29358725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 39199626 - 39199562
Alignment:
Q  86 aataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaat 151  Q
    ||||| ||||||||||||||| |||||||  | | ||| |||| ||||||||||||||||||||||    
T  39199626 aataactaatgtatttagtctatattataatc-atatatattaattattcaatgtatttaaaaaat 39199562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 41915634 - 41915707
Alignment:
Q  76 agatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 149  Q
    ||||||||||||||||| |||||||| || |  |||||  |||||||||||   ||||||||||||| ||||||    
T  41915634 agatacattaaataatttatgtatttggtttagattattgactagatacatacattattcaatgtatctaaaaa 41915707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 44577193 - 44577234
Alignment:
Q  118 tagatacattatttattcaatgtatttaaaaaattaaatttt 159  Q
    ||||||||||| |||||||||||||||||||| | |||||||    
T  44577193 tagatacattaattattcaatgtatttaaaaattaaaatttt 44577234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 23443529 - 23443489
Alignment:
Q  219 gaattttcattaccaccaaaatttcctaattaacatgctta 259  Q
    ||||||||| ||||||||||||| |||||||||||| ||||    
T  23443529 gaattttcaataccaccaaaattccctaattaacatcctta 23443489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 38764447 - 38764395
Alignment:
Q  86 aataattaatgtatttagtctttattatatactagatacattatttattcaat 138  Q
    |||||||| | ||||||| || ||||||| ||||||||||||| |||||||||    
T  38764447 aataattagtatatttagcctatattatagactagatacattaattattcaat 38764395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University