View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2292_low_9 (Length: 445)
Name: NF2292_low_9
Description: NF2292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2292_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 68 - 435
Target Start/End: Original strand, 10682496 - 10682867
Alignment:
| Q |
68 |
ctgcaattgaaccgcaacaaaaaggatatataggtacagaaaacatcatcttaaacctatgctcagacacagaaagtaaacaatgacacactacactaac |
167 |
Q |
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| T |
10682496 |
ctgcaattgaaccgcaacaaaaagaatatataggtacagaaaacatcatcttaaacctatgctcagacacagaaagtaaacaatgacacactacactagc |
10682595 |
T |
|
| Q |
168 |
ataagtttcaatttaatgaaaattttagtgtatcaattgtcgtgaataatttatgataattctaatcctgggtccatccttat-aaggctacaaataatg |
266 |
Q |
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| T |
10682596 |
ataagtttcaacttaatgaaaatttaagtgtatcaattgtcgtgaataatttatgataattctaatcctgggtccatccttataaaggctacaaataatg |
10682695 |
T |
|
| Q |
267 |
aagatatcttgatcacactttcatatataagaattatgttatgcggaatcttatcaagttaaaacagatagagtaatcctaatcagaaaatcccaattaa |
366 |
Q |
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| T |
10682696 |
aagatatcttgatcacactttcatatataagaattatgttatgcggaatcttatcaagttaaaacagatagagtaatccaaatcagaaaatcctaattaa |
10682795 |
T |
|
| Q |
367 |
tagaaatttaagaagataaaataatcctaatcagtaattcaagac---agccggagtctccttctttctctg |
435 |
Q |
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| T |
10682796 |
tagaaatttaagaagataaaataatcctaatcagtaattcaagacttaagccggagtctccttctttctctg |
10682867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 251 - 376
Target Start/End: Complemental strand, 7513362 - 7513243
Alignment:
| Q |
251 |
aaggctacaaataatgaagatatcttgatcacactttcatatataagaattatgttatgcggaatcttatcaagttaaaacagatagagtaatcctaatc |
350 |
Q |
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| T |
7513362 |
aaggctacaaataatgaagatatcttaatcaaactttcacagataaggattatgttatg------catgtaaagttaaaagagatagagtcatcctaatc |
7513269 |
T |
|
| Q |
351 |
agaaaatcccaattaatagaaattta |
376 |
Q |
| |
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| |||||| |||||||| ||||||| |
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| T |
7513268 |
ggcaaatcctaattaatataaattta |
7513243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 31621327 - 31621385
Alignment:
| Q |
13 |
accacaactctcttctctgtttcctccccagaatggatacttgatgtctctgatgctgc |
71 |
Q |
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| T |
31621327 |
accacaacgctcttctctgttatttccccagaatggatacttgaggtttgtgatgctgc |
31621385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 31636322 - 31636380
Alignment:
| Q |
13 |
accacaactctcttctctgtttcctccccagaatggatacttgatgtctctgatgctgc |
71 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||||||| || | ||||||||| |
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|
| T |
31636322 |
accacaacgctcttctctgttatttccccagaatggatacttgaggtttgtgatgctgc |
31636380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 31610480 - 31610529
Alignment:
| Q |
7 |
agaaacaccacaactctcttctctgtttcctccccagaatggatacttga |
56 |
Q |
| |
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||||||||||||| || ||||||||||||||||||| | |||||||||| |
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| T |
31610480 |
agaaacaccacaatacttttctctgtttcctccccagtacggatacttga |
31610529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 397
Target Start/End: Complemental strand, 34000014 - 33999957
Alignment:
| Q |
340 |
taatcctaatcagaaaatcccaattaatagaaatttaagaagataaaataatcctaat |
397 |
Q |
| |
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|||||||||||| || ||| |||||| |||| ||||| ||||||||||||||||||| |
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| T |
34000014 |
taatcctaatcaacaattcctaattaacagaagtttaaaaagataaaataatcctaat |
33999957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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