View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2293_high_11 (Length: 293)
Name: NF2293_high_11
Description: NF2293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2293_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 106 - 287
Target Start/End: Original strand, 38403947 - 38404135
Alignment:
| Q |
106 |
gtttttcatgacaaaaagtaaaggtaatatatgttgattgttcagactcttttatgcgtaacaaaatcaaatataatttgttgaaataacaatacttaag |
205 |
Q |
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| T |
38403947 |
gtttttgatgacaaaaagtaaaggtaatatatgttgattgttcagactcttttatgcgtaacaaaatcaaatataatttgttgaaataacaatacttaag |
38404046 |
T |
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| Q |
206 |
ttaaacaaagaagagagaaatacgagtgagtttggaagaa-------taaggagatgccatgagtgaattgcattaaatagaataatct |
287 |
Q |
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| T |
38404047 |
ttaaacaaagaagagggaaatacgagtgagtttggaagaataaggattaaggagatgccatgagtgaattgcattaaatagaataatct |
38404135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 38403859 - 38403894
Alignment:
| Q |
18 |
gaatgcataagaaaatgacacttgtgaatttttgtg |
53 |
Q |
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| T |
38403859 |
gaatgcataagaaaatgacacttgtgaatttttgtg |
38403894 |
T |
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