View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2293_high_12 (Length: 265)

Name: NF2293_high_12
Description: NF2293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2293_high_12
NF2293_high_12
[»] chr5 (9 HSPs)
chr5 (1-255)||(34233010-34233264)
chr5 (1-230)||(34240808-34241037)
chr5 (7-254)||(42117357-42117604)
chr5 (6-230)||(41713800-41714024)
chr5 (6-230)||(42123104-42123328)
chr5 (3-152)||(41572339-41572488)
chr5 (3-152)||(41617978-41618127)
chr5 (6-254)||(42128498-42128746)
chr5 (7-216)||(41443970-41444179)
[»] chr4 (1 HSPs)
chr4 (6-254)||(11117767-11118015)
[»] chr2 (3 HSPs)
chr2 (6-254)||(11994618-11994866)
chr2 (6-254)||(12248063-12248311)
chr2 (88-254)||(32682134-32682306)
[»] chr6 (2 HSPs)
chr6 (7-242)||(25523264-25523499)
chr6 (1-254)||(24140449-24140702)
[»] chr3 (1 HSPs)
chr3 (43-230)||(8522764-8522951)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 34233264 - 34233010
Alignment:
1 ctgttcaaattggttaattctgcaggaatcataccagtgagaatatttgacgagagatccaatgattccaagtttgtcaagtttagtatggattgaggaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
34233264 ctgttcaaattggttaattctgcaggaatcataccagtgagcatatttgacgagagatccaacgattccaagtttgtcaagttttgtatggattgaggaa 34233165  T
101 taggaccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaa 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34233164 taggaccagtgagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaa 34233065  T
201 atcaatagttacaaagtttattggaatttttaccaatgtcatattgatccctttg 255  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
34233064 atcaatacttacaaagtttattggaatttttaccaatgtcatattgatccctttg 34233010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 34241037 - 34240808
Alignment:
1 ctgttcaaattggttaattctgcaggaatcataccagtgagaatatttgacgagagatccaatgattccaagtttgtcaagtttagtatggattgaggaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
34241037 ctgttcaaattggttaattctgcaggaatcataccagtgagcatatttgacgagagatccaacgattccaagtttgtcaagttttgtatggattgaggaa 34240938  T
101 taggaccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaa 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34240937 taggaccagtgagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaa 34240838  T
201 atcaatagttacaaagtttattggaatttt 230  Q
    ||||||| |||||||  || ||||||||||    
34240837 atcaatacttacaaacattgttggaatttt 34240808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 42117357 - 42117604
Alignment:
7 aaattggttaattctgcaggaatcataccagtgagaatatttgacgagagatccaatgattccaagtttgtcaagtttagtatggattgaggaataggac 106  Q
    |||||||||||||||||||| |||||||| || || |||||||||||||||||||||||||||||||||| |||||||   |||||||  |||||| |||    
42117357 aaattggttaattctgcagggatcataccggtaagcatatttgacgagagatccaatgattccaagtttgacaagtttcccatggatttgggaatatgac 42117456  T
107 cagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaat 206  Q
    | || ||||||||||| ||||||||||||||||||||||| || || ||||| ||| ||||||||||  |||| | ||| |||||| |||| ||||||||    
42117457 cggtgagtctgttatgggaaaggttaagccctttgagtgcatggaggtctccaatagcatttggaatctctccctcaaatttgttttttgacaaatcaat 42117556  T
207 agttacaaagtttattggaatttttaccaatgtcatattgatcccttt 254  Q
    | |||||||  |  |||||||||| ||||||||||| ||| |||||||    
42117557 aattacaaaaatgtttggaattttcaccaatgtcattttgctcccttt 42117604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 41714024 - 41713800
Alignment:
6 caaattggttaattctgcaggaatcataccagtgagaatatttgacgagagatccaatgattccaagtttgtcaagtttagtatggattgaggaatagga 105  Q
    |||||||||||| | | ||||||||  ||||||||| ||||||||||||||||||||||||||||||||| ||||||||   |||||||| |||||  ||    
41714024 caaattggttaactttacaggaatccgaccagtgagcatatttgacgagagatccaatgattccaagtttatcaagtttcccatggattggggaatgtga 41713925  T
106 ccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaa 205  Q
    ||||| ||| |||||| |||||||||||||||||||||  | ||||| ||||| ||| ||| ||||||  | |||| ||| || |||||||| |||||||    
41713924 ccagtgagtttgttatatgaaaggttaagccctttgagatcatgaagctctccaataacatctggaatctccccatcaaatttatttcttgaaaaatcaa 41713825  T
206 tagttacaaagtttattggaatttt 230  Q
    || || ||||| || ||||||||||    
41713824 tacttgcaaagatttttggaatttt 41713800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 42123104 - 42123328
Alignment:
6 caaattggttaattctgcaggaatcataccagtgagaatatttgacgagagatccaatgattccaagtttgtcaagtttagtatggattgaggaatagga 105  Q
    ||||||||||| |||||||||||||| | ||||||| |||||||| |||||||||||  |||||||||||| ||||| |   || ||||| |||||||||    
42123104 caaattggttagttctgcaggaatcacatcagtgagcatatttgatgagagatccaaccattccaagtttgacaagtatccaattgattggggaatagga 42123203  T
106 ccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaa 205  Q
    ||| | ||||||||||| ||||||||||||||| ||||||| || || | ||| ||| ||||||||||  |||| | ||| ||||||||||| | |||||    
42123204 ccattgagtctgttatgggaaaggttaagccctatgagtgcatgtagctttccaatagcatttggaatctctccttcaaatttgtttcttgacatatcaa 42123303  T
206 tagttacaaagtttattggaatttt 230  Q
    || ||||||| ||| ||||||||||    
42123304 tacttacaaacttttttggaatttt 42123328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 41572488 - 41572339
Alignment:
3 gttcaaattggttaattctgcaggaatcataccagtgagaatatttgacgagagatccaatgattccaagtttgtcaagtttagtatggattgaggaata 102  Q
    ||||| |||| ||||||||| |||||| | ||||||||| ||||||||||| |||||||||||||||| ||||| |||||||  || |||||||||||||    
41572488 gttcagattgattaattctgaaggaattacaccagtgagtatatttgacgaaagatccaatgattccatgtttgacaagtttcctacggattgaggaata 41572389  T
103 ggaccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaag 152  Q
    ||||| || ||||||||||| |||||||||||||||||||||| ||||||    
41572388 ggaccggtgagtctgttatgggaaaggttaagccctttgagtgagtgaag 41572339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 41618127 - 41617978
Alignment:
3 gttcaaattggttaattctgcaggaatcataccagtgagaatatttgacgagagatccaatgattccaagtttgtcaagtttagtatggattgaggaata 102  Q
    ||||| |||| ||||||||| |||||| | ||||||||| ||||||||||| |||||||||||||||| ||||| |||||||  || |||||||||||||    
41618127 gttcagattgattaattctgaaggaattacaccagtgagtatatttgacgaaagatccaatgattccatgtttgacaagtttcctacggattgaggaata 41618028  T
103 ggaccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaag 152  Q
    ||||| || ||||||||||| |||||||||||||||||||||| ||||||    
41618027 ggaccggtgagtctgttatgggaaaggttaagccctttgagtgagtgaag 41617978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 254
Target Start/End: Original strand, 42128498 - 42128746
Alignment:
6 caaattggttaattctgcaggaatcataccagtgagaatatttgacgagagatccaatgattccaagtttgtcaagtttagtatggattgaggaatagga 105  Q
    ||||||| |||||||||||||||||| | ||||||| | |||||| |||||||||||  ||||||||||||||||||||   |||||||  ||||||||     
42128498 caaattgcttaattctgcaggaatcacatcagtgagcacatttgatgagagatccaaccattccaagtttgtcaagtttcccatggattttggaataggg 42128597  T
106 ccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaa 205  Q
    ||| | ||| ||||||| |||||||| || ||| | ||||| ||||| || || | ||||||||||||  |||| | ||| ||||||||||| |||||||    
42128598 ccaatgagtttgttatgggaaaggttgagtcctattagtgcatgaagctcaccaaaatcatttggaatatctccttcaaatttgtttcttgacaaatcaa 42128697  T
206 tagttacaaagtttattggaatttttaccaatgtcatattgatcccttt 254  Q
    || |||||||| |  |||||||||| ||||||||| | ||| |||||||    
42128698 taattacaaagatatttggaattttcaccaatgtccttttgttcccttt 42128746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 41443970 - 41444179
Alignment:
7 aaattggttaattctgcaggaatcataccagtgagaatatttgacgagagatccaatgattccaagtttgtcaagtttagtatggattgaggaataggac 106  Q
    ||||||||||| |||| ||||||| |||||||||| |||||||| |||||||||| |||||| | |||| |||| |||   | |||||||||||| | ||    
41443970 aaattggttaactctgtaggaatcctaccagtgagcatatttgaggagagatccattgattcgatgtttatcaaatttccaaaggattgaggaatcgcac 41444069  T
107 cagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaat 206  Q
    |||| ||| | || || |||||||| || ||| ||| ||| ||||| || || ||| ||||||||||  |||| | ||| ||||||| ||| ||||||||    
41444070 cagtaagtttattgtgggaaaggttgagtcctatgattgcatgaagctcaccaataacatttggaatgtctccttcaaatttgtttcctgaaaaatcaat 41444169  T
207 agttacaaag 216  Q
    | ||||||||    
41444170 acttacaaag 41444179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 254
Target Start/End: Original strand, 11117767 - 11118015
Alignment:
6 caaattggttaattctgcaggaatcataccagtgagaatatttgacgagagatccaatgattccaagtttgtcaagtttagtatggattgaggaatagga 105  Q
    |||||||||||||||||||||||||| ||  || |  |||||||| || |||||||| |||||||||| || |||||||  |||||| |  |||||| ||    
11117767 caaattggttaattctgcaggaatcacactggttaacatatttgatgaaagatccaaagattccaagtatgccaagtttcctatggagttgggaatatga 11117866  T
106 ccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaa 205  Q
    ||||| ||||||||| | ||||| ||||||||||||||||| ||||| ||||| ||| |||||| |||  |||| | ||| ||||||||||| |||||||    
11117867 ccagtaagtctgttacgggaaagattaagccctttgagtgcatgaagctctccaatagcatttgtaatctctccttcaaatttgtttcttgacaaatcaa 11117966  T
206 tagttacaaagtttattggaatttttaccaatgtcatattgatcccttt 254  Q
    || |||| || |||||||||||||| |||| |||||| ||| |||||||    
11117967 tacttactaactttattggaattttcaccagtgtcattttgttcccttt 11118015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 6 - 254
Target Start/End: Complemental strand, 11994866 - 11994618
Alignment:
6 caaattggttaattctgcaggaatcataccagtgagaatatttgacgagagatccaatgattccaagtttgtcaagtttagtatggattgaggaatagga 105  Q
    |||||||||||||| ||| ||||||| | ||||||| |||||||| ||||||||||   ||||||||||||||||||||   |||||||  |||||||||    
11994866 caaattggttaattttgctggaatcacatcagtgagcatatttgatgagagatccagccattccaagtttgtcaagtttcccatggatttgggaatagga 11994767  T
106 ccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaa 205  Q
    ||| | ||||||||||| ||||||||||||||| | ||||| ||||| ||  | ||| ||||||||||  |||| | ||| ||||||||||| |||||||    
11994766 ccaatgagtctgttatgggaaaggttaagccctataagtgcttgaagctcatcaataacatttggaatctctccttcaaatttgtttcttgacaaatcaa 11994667  T
206 tagttacaaagtttattggaatttttaccaatgtcatattgatcccttt 254  Q
    || |||| ||| |  |||||||||| ||| ||||||| ||| |||||||    
11994666 taattactaagatgtttggaattttaacccatgtcattttgttcccttt 11994618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 6 - 254
Target Start/End: Original strand, 12248063 - 12248311
Alignment:
6 caaattggttaattctgcaggaatcataccagtgagaatatttgacgagagatccaatgattccaagtttgtcaagtttagtatggattgaggaatagga 105  Q
    |||||||||||||| ||| ||||||| | ||||||| |||||||| ||||||||||   ||||||||||||||||||||   |||||||  |||||||||    
12248063 caaattggttaattttgctggaatcacatcagtgagcatatttgatgagagatccagccattccaagtttgtcaagtttcccatggatttgggaatagga 12248162  T
106 ccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaa 205  Q
    ||| | ||||||||||| ||||||||||||||| | ||||| ||||| ||  | ||| ||||||||||  |||| | ||| ||||||||||| |||||||    
12248163 ccaatgagtctgttatgggaaaggttaagccctataagtgcttgaagctcatcaataacatttggaatctctccttcaaatttgtttcttgacaaatcaa 12248262  T
206 tagttacaaagtttattggaatttttaccaatgtcatattgatcccttt 254  Q
    || |||| ||| |  |||||||||| ||| ||||||| ||| |||||||    
12248263 taattactaagatgtttggaattttaacccatgtcattttgttcccttt 12248311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 254
Target Start/End: Complemental strand, 32682306 - 32682134
Alignment:
88 atggattgaggaataggaccagttagtctgttatgtgaaaggttaagccctttga------gtgcgtgaagttctcctatatcatttggaattcctccat 181  Q
    |||||||| |||||| || | || ||||||||||| ||||||||||||||| |||      |||| ||||| || || ||| ||||||||||  |||| |    
32682306 atggattggggaatatgatcggtgagtctgttatgggaaaggttaagccctctgattctgagtgcatgaagctccccaatagcatttggaatctctcctt 32682207  T
182 taaacttgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatcccttt 254  Q
     |||  |||||||||| ||||||||| ||||||||||| |||||||||| || | |||||| ||| |||||||    
32682206 caaatctgtttcttgacaaatcaatacttacaaagtttcttggaattttcactagtgtcattttgctcccttt 32682134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 25523499 - 25523264
Alignment:
7 aaattggttaattctgcaggaatcataccagtgagaatatttgacgagagatccaatgattccaagtttgtcaagtttagtatggattgaggaataggac 106  Q
    |||||||||||||| |||||||||| ||| || |  |||||    || |||||||  |||||||||| ||||||||||  ||||||||  |||||| |||    
25523499 aaattggttaattccgcaggaatcacaccggttaacatattcagggaaagatccagagattccaagtatgtcaagtttcctatggatttgggaatatgac 25523400  T
107 cagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaat 206  Q
    | || |||||||| || ||||||||||||||||||||||| ||||| ||||| ||| ||||||||||  |||| | ||| ||||||||||| ||||||||    
25523399 cggtaagtctgttgtgggaaaggttaagccctttgagtgcatgaagctctccaatagcatttggaatctctccttcaaatttgtttcttgaaaaatcaat 25523300  T
207 agttacaaagtttattggaatttttaccaatgtcat 242  Q
    || |||||| |||||||||||||| |||||| ||||    
25523299 agatacaaactttattggaattttcaccaatttcat 25523264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 24140449 - 24140702
Alignment:
1 ctgttcaaattggttaattctgcaggaatcataccagtgagaatatttgacgagagatccaatgattccaagtttgtcaagtttagtatggattgaggaa 100  Q
    ||||||| |||||||||||| | ||||||||  || || |  |||||||| || |||| ||| |||||||||| |||||| |||   |||||||| ||||    
24140449 ctgttcatattggttaattccgaaggaatcacgccggttaacatatttgatgaaagattcaaagattccaagtatgtcaactttccgatggattggggaa 24140548  T
101 taggaccagttagtctgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaa 200  Q
    || ||||||| ||||||||||| |||||||||| |||||||||||| ||||| ||||| ||| ||||||||||  |||| | ||| ||||||||||| |     
24140549 tatgaccagtaagtctgttatgggaaaggttaatccctttgagtgcatgaagctctccgatagcatttggaatctctccttcaaatttgtttcttgacat 24140648  T
201 atcaatagttacaaagtttattggaatttttaccaatgtcatattgatcccttt 254  Q
    ||| ||| ||||||| ||| |||||||||| |||| |||||| ||| |||||||    
24140649 atcgatacttacaaacttttttggaattttcaccagtgtcattttggtcccttt 24140702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 43 - 230
Target Start/End: Original strand, 8522764 - 8522951
Alignment:
43 atatttgacgagagatccaatgattccaagtttgtcaagtttagtatggattgaggaataggaccagttagtctgttatgtgaaaggttaagccctttga 142  Q
    |||||||| || |||||||| |||||||||| ||||||||||  ||||||||  |||||| |||| || ||||||||||| ||||||||||||||| |||    
8522764 atatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttgggaatatgacctgtaagtctgttatgggaaaggttaagccctatga 8522863  T
143 gtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaatagttacaaagtttattggaatttt 230  Q
     ||| ||||| || || |||   ||||||||  | || | ||| ||||||||||| ||||||||| ||||||||||  ||||||||||    
8522864 ttgcatgaagctcaccaataatctttggaatctcgccttcaaatttgtttcttgacaaatcaataattacaaagttgtttggaatttt 8522951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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