View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2293_high_14 (Length: 262)
Name: NF2293_high_14
Description: NF2293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2293_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 9213808 - 9214040
Alignment:
| Q |
13 |
acctgtggaaaaatttcgagtcaacgacatcacgtagaaccattcagcatcgccgtttgtacatgtgttactgtcgtttggtttgtttgaagttgttgtt |
112 |
Q |
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| T |
9213808 |
acctatggaaaaaatccgagtcaacgacatcacatagaaccattcagcatctttgtttgcacacgtgttactgtcgttttgtttgtttgaatttgttgtt |
9213907 |
T |
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| Q |
113 |
tctttggttccttgaaaatagccttcaccccaagataagaaaggttcacctttttcatcttttgttgtttgccataaaatagcatagacccaattttcag |
212 |
Q |
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| T |
9213908 |
tctttggttccttgaaaatagccttcaccccaagataagagaggtttacctttttcatcttttgttgtttgccataaaatagcatagacccaattttcgg |
9214007 |
T |
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| Q |
213 |
attgggtttggagtaaaaattgaagtttttgtt |
245 |
Q |
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| T |
9214008 |
attgggtttggactagaaattgaagtttttgtt |
9214040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 94 - 245
Target Start/End: Complemental strand, 9194168 - 9194017
Alignment:
| Q |
94 |
tttgtttgaagttgttgtttctttggttccttgaaaatagccttcaccccaagataagaaaggttcacctttttcatcttttgttgtttgccataaaata |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
9194168 |
tttgtttgaagttgttgtttctttggttccttgaaaatagccttcaccccaagataagaaaggtttacctttttcatcttttgttgtttgccacaaaatg |
9194069 |
T |
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| Q |
194 |
gcatagacccaattttcagattgggtttggagtaaaaattgaagtttttgtt |
245 |
Q |
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| T |
9194068 |
ccatagatccaattttcggattggatttggagtagaaattgaagcttttgtt |
9194017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 9194219 - 9194169
Alignment:
| Q |
13 |
acctgtggaaaaatttcgagtcaacgacatcacgtagaaccattcagcatc |
63 |
Q |
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| T |
9194219 |
acctatggaaaattttcgagttaacgacatcacgtagaaccattcagcatc |
9194169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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