View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2293_high_6 (Length: 411)

Name: NF2293_high_6
Description: NF2293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2293_high_6
NF2293_high_6
[»] chr2 (2 HSPs)
chr2 (53-280)||(9142244-9142470)
chr2 (277-398)||(9142066-9142187)
[»] chr4 (5 HSPs)
chr4 (283-354)||(36012506-36012577)
chr4 (192-272)||(50743708-50743787)
chr4 (307-383)||(50743812-50743887)
chr4 (192-264)||(55678896-55678967)
chr4 (202-259)||(36011353-36011411)
[»] chr8 (2 HSPs)
chr8 (202-278)||(3119303-3119379)
chr8 (296-366)||(3119147-3119219)
[»] chr3 (1 HSPs)
chr3 (296-381)||(32902224-32902311)
[»] chr1 (1 HSPs)
chr1 (192-272)||(33420817-33420896)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 53 - 280
Target Start/End: Complemental strand, 9142470 - 9142244
Alignment:
Q  53 cacaccttgacaaatcatttagcttattgtaccnnnnnnntaaatatcatttagcttaccaaatatatcatatattaggaaatttcctaatctggcttcc 152  Q
    |||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9142470 cacaccttgacaaatcatttagcttattgtaccaaaaaaa-aaatatcatttagcttaccaaatatatcatatattaggaaatttcctaaactggcttcc 9142372  T
Q  153 aatttcgtgctcttttactgagannnnnnnagctttctagttacaaccataaatgacaaaaacacccttaaataaaattttatttccaatttcatccaaa 252  Q
    |||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9142371 aatttcgtgctcttttaccgagatttttt-agctttctagttacaaccataaatgacaaaaacacccttaaataaaatttaatttccaatttcatccaaa 9142273  T
Q  253 acctttgcaatctttctc-tcttcttcca 280  Q
    ||||||||||||| |||| ||||||||||    
T  9142272 acctttgcaatctctctcttcttcttcca 9142244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 277 - 398
Target Start/End: Complemental strand, 9142187 - 9142066
Alignment:
Q  277 tccacataacagcaagtttgcaagatttgaaagcaattttgaaataaggaaggttagaaaattgtgttcttgattcatttatgttttttccctcatttca 376  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9142187 tccacataacagcaagtttgcaagatttgaaagcaattttgaaacaaggaaggttagaaaattgtgttcttgattcatttatgttttttccctcatttca 9142088  T
Q  377 attcatgatgattttgattgtg 398  Q
    ||||||||||||||||||||||    
T  9142087 attcatgatgattttgattgtg 9142066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 36012506 - 36012577
Alignment:
Q  283 taacagcaagtttgcaagatttgaaagcaattttgaaataaggaaggttagaaaattgtgttcttgattcat 354  Q
    |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||| |||||||||||||    
T  36012506 taacagcaagtttgcaagatttcaaagcaattttgaaacaagcaaggttagaaaattgggttcttgattcat 36012577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 50743708 - 50743787
Alignment:
Q  192 gttacaaccataaatgacaaaaacacccttaaataaaattttatttccaatttcatccaaaacctttgcaatctttctctc 272  Q
    |||||| ||||||||||||| ||||||||||||||||| |||| |||  |||||| |||||| |||||| ||| |||||||    
T  50743708 gttacacccataaatgacaataacacccttaaataaaa-tttaattctcatttcacccaaaatctttgctatcgttctctc 50743787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 50743812 - 50743887
Alignment:
Q  307 aagcaattttgaaataaggaaggttagaaaattgtgttcttgattcatttatgttttttccctcatttcaattcatg 383  Q
    |||||||||||||| ||  ||| ||||||||||||||| ||||||  ||| | ||||||||||||||||||||||||    
T  50743812 aagcaattttgaaacaaccaagattagaaaattgtgtt-ttgatttgttttttttttttccctcatttcaattcatg 50743887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 55678896 - 55678967
Alignment:
Q  192 gttacaaccataaatgacaaaaacacccttaaataaaattttatttccaatttcatccaaaacctttgcaatc 264  Q
    |||||| || |||||||||| |||||||||||||||||||| ||| |||| |||| ||| || ||||||||||    
T  55678896 gttacatccctaaatgacaataacacccttaaataaaatttaattcccaa-ttcaaccagaatctttgcaatc 55678967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 36011353 - 36011411
Alignment:
Q  202 taaatgacaaaaacacccttaaa-taaaattttatttccaatttcatccaaaacctttg 259  Q
    ||||||||||||| ||||||||| |||||||| ||| ||||||||| |||||| |||||    
T  36011353 taaatgacaaaaatacccttaaaataaaatttaattcccaatttcacccaaaatctttg 36011411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 3119379 - 3119303
Alignment:
Q  202 taaatgacaaaaacacccttaaataaaattttatttccaatttcatccaaaacctttgcaatctttctctcttcttc 278  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||| | ||||||||||||||| |||||||||||||    
T  3119379 taaatgacaaaaacacccttagataaaatttaattcccaatttcaccaaaaacctttgcaatcgttctctcttcttc 3119303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 3119219 - 3119147
Alignment:
Q  296 gcaagatttgaaagcaattttgaaataaggaaggttagaaaatt--gtgttcttgattcatttatgttttttc 366  Q
    ||||||||| | ||||||||||||| ||| ||||||||||||||  || || |||||||||||||| ||||||    
T  3119219 gcaagatttcatagcaattttgaaacaagcaaggttagaaaattgggtttttttgattcatttatggtttttc 3119147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 381
Target Start/End: Original strand, 32902224 - 32902311
Alignment:
Q  296 gcaagatttgaaagcaattttgaaataaggaaggttagaaaattgtgttcttgattcatttatg--ttttttccctcatttcaattca 381  Q
    |||||||||  |||||||||||||| ||| ||||||||||||||||| |||| |||||||||||  | ||||||||||||||| ||||    
T  32902224 gcaagatttcgaagcaattttgaaacaagcaaggttagaaaattgtgctcttaattcatttatgattattttccctcatttcatttca 32902311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 33420817 - 33420896
Alignment:
Q  192 gttacaaccataaatgacaaaaacacccttaaataaaattttatttccaatttcatccaaaacctttgcaatctttctctc 272  Q
    |||||| ||||||||||||| ||||||||||||| |||||||| |||| |||||| | |||| |||||| ||| |||||||    
T  33420817 gttacacccataaatgacaataacacccttaaat-aaattttaattcccatttcacctaaaatctttgctatcgttctctc 33420896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University