View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2293_low_1 (Length: 613)
Name: NF2293_low_1
Description: NF2293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2293_low_1 |
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| [»] scaffold0813 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 46 - 604
Target Start/End: Complemental strand, 6625332 - 6624775
Alignment:
| Q |
46 |
caactgttatatactataaaattcttttatgaatctaatatacatatgtgttctttaatcctccattcaacttttctaatattcttgatgtgacaagtta |
145 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6625332 |
caactgttatatactataaaattcttttatgaatctaatatacgtatgtgttctttaatcctccattcaacttttctaatattcttgatgtgacaagtta |
6625233 |
T |
|
| Q |
146 |
tttgtggaagcaatgactcgttaatttcaaccttctactcttttattcttcactgttccttcgtgtaaggatttgcagaccaaatgcgatgatgttgata |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6625232 |
tttgtggaagcaatgactcgttaatttcaaccttctactcttttattcttcactgttccttcgtgtaaggatttgcagaccaaatgcgatgatgttgata |
6625133 |
T |
|
| Q |
246 |
ggtattcttgaggtgggattttaactgaatcactcatgaaactaaacgatatggtgggttaacacaacaacaaatttgttcagaataaaagtatttgagg |
345 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6625132 |
ggtactctagaggtgggattttaactgaatcactcatgaaaataaacgatatggtgggttaacacaacaacaaatttgttcagaataaaagtatttgagg |
6625033 |
T |
|
| Q |
346 |
cttaatattattcctcttttacttcacaactagttatatcagaacatgcacgcaagtttgtatacttaccagttacgagtaactcttaaattactcgagt |
445 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
6625032 |
cttaatattattcctcttttacttcacaactagttatatcagaacatgcacccaagtttttatacttaccagttacgagtgactcttaaattactcgagt |
6624933 |
T |
|
| Q |
446 |
aatagtttctaataaataccaatagattaccatttcactaaagcgtgtcttttattacatttccattgcaatgcannnnnnnncttttaaaaatgtgcaa |
545 |
Q |
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| T |
6624932 |
aatagtttctaataaatgccaatagattaccagttcactaaagcgtgtcttttattacattcccattgcaatgca-tttttttcttttaaaaatgtgcaa |
6624834 |
T |
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| Q |
546 |
tgtatatgggcacacaattctcccttttctattgattgatgcatatattcgagaataat |
604 |
Q |
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| T |
6624833 |
tgtatatgggcacacaattctcccttttctattgattgatgcatatattcgagaataat |
6624775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 92 - 330
Target Start/End: Original strand, 6717062 - 6717298
Alignment:
| Q |
92 |
tgtgttctttaatcctccattcaacttttctaatattcttgatgtgacaagttatttgtggaagcaatgactcgttaatttcaaccttctactcttttat |
191 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||| | ||||||||||||||||||||||| || ||| | |||||||| |||||| |
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| T |
6717062 |
tgtgttctttaatcctccattcaacttttctaaaattgttgatgtgtccagttatttgtggaagcaatgacttgtggccttccaacttctacttttttat |
6717161 |
T |
|
| Q |
192 |
tcttcactgttccttcgtgtaaggatttgcagaccaaatgcgatgatgttgataggtattcttgaggtgggattttaactgaatcactcatgaaactaaa |
291 |
Q |
| |
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| || || |||||| || ||||| ||| ||||| |||||| || |||||| || ||||||| ||||||| ||||||| |||||||||||| |||||||| |
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| T |
6717162 |
tttttgcttttccttagtttaagg-tttacagactaaatgccataatgttggta-gtattctagaggtggaattttaattgaatcactcattaaactaaa |
6717259 |
T |
|
| Q |
292 |
cgatatggtgggttaacacaacaacaaatttgttcagaa |
330 |
Q |
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| T |
6717260 |
ggatatggtgggttaacacaacaacaaaattgtgcagaa |
6717298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 335 - 397
Target Start/End: Complemental strand, 6717574 - 6717512
Alignment:
| Q |
335 |
agtatttgaggcttaatattattcctcttttacttcacaactagttatatcagaacatgcacg |
397 |
Q |
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|||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||| |
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| T |
6717574 |
agtattcgaggcttaatagtattcatcttttacttcacaactaattatatcagaacatacacg |
6717512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 395
Target Start/End: Original strand, 6672128 - 6672180
Alignment:
| Q |
343 |
aggcttaatattattcctcttttacttcacaactagttatatcagaacatgca |
395 |
Q |
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| T |
6672128 |
aggcttaatgttattcctctattatttcacaactacctatatcagaacatgca |
6672180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0813 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: scaffold0813
Description:
Target: scaffold0813; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 92 - 330
Target Start/End: Complemental strand, 1614 - 1378
Alignment:
| Q |
92 |
tgtgttctttaatcctccattcaacttttctaatattcttgatgtgacaagttatttgtggaagcaatgactcgttaatttcaaccttctactcttttat |
191 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||| | ||||||||||||||||||||||| || ||| | |||||||| |||||| |
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| T |
1614 |
tgtgttctttaatcctccattcaacttttctaaaattgttgatgtgtccagttatttgtggaagcaatgacttgtggccttccaacttctacttttttat |
1515 |
T |
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| Q |
192 |
tcttcactgttccttcgtgtaaggatttgcagaccaaatgcgatgatgttgataggtattcttgaggtgggattttaactgaatcactcatgaaactaaa |
291 |
Q |
| |
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| || || |||||| || ||||| ||| ||||| |||||| || |||||| ||| |||||| ||||||| ||||||| |||||||||||| |||||||| |
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| T |
1514 |
tttttgcttttccttagtttaagg-tttacagactaaatgccataatgttggtag-tattctagaggtggaattttaattgaatcactcattaaactaaa |
1417 |
T |
|
| Q |
292 |
cgatatggtgggttaacacaacaacaaatttgttcagaa |
330 |
Q |
| |
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||||||||||||||||||||||||||| |||| ||||| |
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| T |
1416 |
ggatatggtgggttaacacaacaacaaaattgtgcagaa |
1378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0813; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 335 - 397
Target Start/End: Original strand, 1102 - 1164
Alignment:
| Q |
335 |
agtatttgaggcttaatattattcctcttttacttcacaactagttatatcagaacatgcacg |
397 |
Q |
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|||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||| |
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| T |
1102 |
agtattcgaggcttaatagtattcatcttttacttcacaactaattatatcagaacatacacg |
1164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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