View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2293_low_17 (Length: 237)
Name: NF2293_low_17
Description: NF2293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2293_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 42393554 - 42393335
Alignment:
| Q |
1 |
taatgaaagaaacccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggg |
100 |
Q |
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| T |
42393554 |
taatgaaagaaacccttcgtttgcacccatcacttccacttctaatgtctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggg |
42393455 |
T |
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| Q |
101 |
gtcttgtgtgtttgtgaacgtttgggctattcatagagacccttccatttgggagaaaccgttagaatttgatccgacaaggttcttggatggtaaatgg |
200 |
Q |
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| T |
42393454 |
gtcttgtgtgtttgtgaacgtttgggctattcatagagacccttccatttgggagaaaccgctagaatttgatccgacaaggttcttggatggtaaatgg |
42393355 |
T |
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| Q |
201 |
gattataaagggaatgactt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
42393354 |
gattataaagggaatgactt |
42393335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 42377000 - 42376783
Alignment:
| Q |
3 |
atgaaagaaacccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggt |
102 |
Q |
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| T |
42377000 |
atgaaagaaactcttcgtttacaccctgcacttccacttttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccagagggat |
42376901 |
T |
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| Q |
103 |
cttgtgtgtttgtgaacgtttgggctattcatagagacccttccatttgggagaaaccgttagaatttgatccgacaaggttcttggatggtaaatggga |
202 |
Q |
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| T |
42376900 |
ctcgtgtctttatcaacgtttgggctattcatagagacccttatgtttgggagaacccactagaatttgatcctacaaggttcttggatggtaaatggga |
42376801 |
T |
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| Q |
203 |
ttataaagggaatgactt |
220 |
Q |
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||||| ||||||||||| |
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| T |
42376800 |
ttatagtgggaatgactt |
42376783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 42387351 - 42387228
Alignment:
| Q |
1 |
taatgaaagaaacccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggg |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| || | ||||| ||||||||||||||||||||| | |||||||||||||||||| |||| |
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| T |
42387351 |
taatgaaagaaacccttcgtttgcacccaacacttccacttttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccagaggg |
42387252 |
T |
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| Q |
101 |
gtcttgtgtgtttgtgaacgtttg |
124 |
Q |
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||| |||| ||| | |||||||| |
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| T |
42387251 |
atctcgtgtctttatcaacgtttg |
42387228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 42387220 - 42387179
Alignment:
| Q |
179 |
aaggttcttggatggtaaatgggattataaagggaatgactt |
220 |
Q |
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| T |
42387220 |
aaggttcttggatggtaaatgggattatagtgggaatgactt |
42387179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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