View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2293_low_2 (Length: 594)
Name: NF2293_low_2
Description: NF2293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2293_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 3 - 588
Target Start/End: Original strand, 1346986 - 1347583
Alignment:
| Q |
3 |
ggtcaatgaagcgaagaataatataacagaaaaacaagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaa |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1346986 |
ggtcaatgaagcgaagaataatataacagaaaaacaagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaa |
1347085 |
T |
|
| Q |
103 |
gagtcaaaaagatcttatctcaaagaccttgaatgatatgcaagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaa |
202 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1347086 |
gagtcaaaaagatcttatctcaaagaccttgaatgatttgcaagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaa |
1347185 |
T |
|
| Q |
203 |
tcaagcacttcaagctccaacaaaactgacaaattagggatttgtgcaaaggaaggtagaccgcaaaactaaagagggaaaaagttcagaggtataacta |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
1347186 |
tcaagcacttcaagctccaacaaaactgacaaattagggatttgtgcaaaggaaggtagaccgcaaaactaaagagggcaaaagttcagaggtagaacta |
1347285 |
T |
|
| Q |
303 |
actcaagcaagggaacaagaggtaatggctctgtgcaaaataaagcagtgtcaggaatgcaagaaatatggaca------------cagccacaaattgt |
390 |
Q |
| |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |
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| T |
1347286 |
actcaagcaatggaactagaggtaatggctctgtgcaaaataaagcagtgtcatgaatgcaagaaatatggacataatatatatatcagcaacaaattgt |
1347385 |
T |
|
| Q |
391 |
tctattcaaccaacgtggttacgaaaaatgctaagcaatgcatatatcgcgtagttattaagtgcaccctagaattgttggaccattgatttgtataagg |
490 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1347386 |
tctattcaagcaacgtggttacgaaaaatgctaagcaaagcatatatcgcgtagttattaagtgtaccctagaattgttggaccattgatttgtataagg |
1347485 |
T |
|
| Q |
491 |
agacaaaacctatacttttcaaaccatcaaatccaatagtagcaggtatagaaaattaagaaaaaaccaagtatacatctaggaaatattcatctcac |
588 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| |
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| T |
1347486 |
agacaaaacctatacttttcaaaccatcaaatccaatagtagcaggtatagaaaattaagaaaacaccaagtatatatctaggaaatattcatatcac |
1347583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 152 - 264
Target Start/End: Complemental strand, 8675916 - 8675805
Alignment:
| Q |
152 |
ttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaactgacaaattagggatttgtgcaa |
251 |
Q |
| |
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|||||||| ||||||||| ||||| |||||| ||||||||||||||| | ||| || || |||||||||||| ||||||||| ||||||||||| || |
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| T |
8675916 |
ttggagtcgcatgaaatgttaatgagtgaaagg-tcaagtgacacaatcgaacaaacatttacagctccaacaaatctgacaaataagggatttgtgtaa |
8675818 |
T |
|
| Q |
252 |
aggaaggtagacc |
264 |
Q |
| |
|
||||||||||||| |
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|
| T |
8675817 |
aggaaggtagacc |
8675805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 38 - 209
Target Start/End: Complemental strand, 19807748 - 19807579
Alignment:
| Q |
38 |
aagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatg |
137 |
Q |
| |
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|||||||| ||||||||||| |||||||| || ||| ||||||||| ||| ||||||| ||||||| ||||||||| | | || ||||| ||||| |
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| T |
19807748 |
aagtcatggagaaaattgtgctaacactaacaagctgattcaattacgcattagcagcaattgaagagtc-aaaagatctgaacacagcgacctagaatg |
19807650 |
T |
|
| Q |
138 |
atatgcaagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagca |
209 |
Q |
| |
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|| ||||| || ||||| ||||||||||||||| ||| | |||| |||||||||||||||| |||||||| |
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| T |
19807649 |
atttgcaatcacccttgcagtcacatgaaatgcaaataagtgaaa-agtcaagtgacacaatcgatcaagca |
19807579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 406 - 522
Target Start/End: Complemental strand, 8675798 - 8675681
Alignment:
| Q |
406 |
tggttacgaaaaatgctaagcaatgcatatatcgcgtagttattaagtgcaccctagaattgttggacc-attgatttgtataaggagacaaaacctata |
504 |
Q |
| |
|
||||||| |||||||||||||| ||||||| || ||||||| |||||||||||||||||| |||| ||||||||||||||||||| || ||| || |
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|
| T |
8675798 |
tggttacagaaaatgctaagcaaaacatatattgcatagttatcaagtgcaccctagaattggaagaccgtttgatttgtataaggagaccaagcctgta |
8675699 |
T |
|
| Q |
505 |
cttttcaaaccatcaaat |
522 |
Q |
| |
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| |||||||| |||||| |
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| T |
8675698 |
ttgttcaaaccgtcaaat |
8675681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 9619623 - 9619569
Alignment:
| Q |
214 |
aagctccaacaaaactgacaaattagggatttgtgcaaaggaaggtagaccgcaa |
268 |
Q |
| |
|
|||||||| |||| ||||||||| || ||||||||||||||| |||||||||||| |
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|
| T |
9619623 |
aagctccagcaaatctgacaaataagtgatttgtgcaaaggagggtagaccgcaa |
9619569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 488
Target Start/End: Complemental strand, 9619439 - 9619327
Alignment:
| Q |
376 |
acagccacaaattgttctattcaaccaacgtggttacgaaaaatgctaagcaatgcatatatcgcgtagttattaagtgcaccctagaattgttggacca |
475 |
Q |
| |
|
||||||||||||| || || |||| ||| ||||||| ||||||||||||| |||| || || ||||||||||||||||||| |||| ||||| |
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| T |
9619439 |
acagccacaaattattttactcaagcaatttggttacagaaaatgctaagcataacatacattgcacagttattaagtgcaccctataattagaagacca |
9619340 |
T |
|
| Q |
476 |
ttgatttgtataa |
488 |
Q |
| |
|
|| |||||||||| |
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| T |
9619339 |
tttatttgtataa |
9619327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 442 - 513
Target Start/End: Complemental strand, 15785176 - 15785105
Alignment:
| Q |
442 |
tagttattaagtgcaccctagaattgttggaccattgatttgtataaggagacaaaacctatacttttcaaa |
513 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||| | |||||| |
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|
| T |
15785176 |
tagttatcaagtgcaccctagaattggtggaccattaattggtataaggagaccaaacctatattgttcaaa |
15785105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 40031430 - 40031340
Alignment:
| Q |
21 |
taatataacagaaaaacaagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaa |
111 |
Q |
| |
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||||| ||||||||||||||||||| |||| ||| || | |||||| | |||||| ||||||||| ||||| |||| ||||||||||||| |
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|
| T |
40031430 |
taatacaacagaaaaacaagtcatggagaagattatgcaaacactatcaagatgattcaattacgccatagcagcatctcaagagtcaaaa |
40031340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 155 - 296
Target Start/End: Original strand, 32241112 - 32241251
Alignment:
| Q |
155 |
gagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaa-ctgacaaattagggatttgtgcaaag |
253 |
Q |
| |
|
||||||||||||||| |||||| |||||| || ||||||| |||| | ||| || || ||||||| ||||| |||||| || |||||||||||||||| |
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|
| T |
32241112 |
gagtcacatgaaatgtgaatgagtgaaagg-tcgagtgacataatcgaccaaacatttaaagctccttcaaaatctgacagatgagggatttgtgcaaag |
32241210 |
T |
|
| Q |
254 |
gaaggtagaccgcaaaactaaagagggaaaaagttcagaggta |
296 |
Q |
| |
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|| |||||||| | ||| |||||||| |||| || ||||||| |
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|
| T |
32241211 |
gatggtagacctc--aaccaaagagggcaaaactttagaggta |
32241251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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