View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2293_low_3 (Length: 551)
Name: NF2293_low_3
Description: NF2293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2293_low_3 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 497; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 13 - 536
Target Start/End: Complemental strand, 1455554 - 1455030
Alignment:
| Q |
13 |
aatatattcgctgctttcacatcacgatgaataaccttaggatcacaatgatcatgcaagtaagccagccccttggcagctcccagcccaatattcttcc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1455554 |
aatatattcgctgctttcacatcacgatgaataaccttaggatcacaatgatcatgcaagtaagccagccccttggcagctcccagcccaatattcttcc |
1455455 |
T |
|
| Q |
113 |
tcattggccaatcaagcggcggttgagaggcattacgttctacaacaacacaaagaatatacatagatggagttataatatgaaactgcaaattttgaaa |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1455454 |
tcattggccaatcaagtggcggttgagaggcattacgttctacaacaacaaaaagaatatacatagatggagttataatatgaaactgcaaattttgaaa |
1455355 |
T |
|
| Q |
213 |
ttcaacagtaatagccgagcactcatttgcatttgaaaatttgaggtacttaagaattttcatgtttgtatctgcgtaaccttcagcaaataggtaggaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
1455354 |
ttcaacagtaatagccgagcactcatttgcatttgaaaatttgaggtacttaagaattttcatgtttgtatttgcgtaaccttcagcaaataggtaggaa |
1455255 |
T |
|
| Q |
313 |
atactaattattattttttcaatgataaaccaaaataaaccagaaacagatttggcattgaactagcatttctaccagaaaaggaaatatgagagaaaag |
412 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1455254 |
atactaattattattttttcaatgataaatcaaaataaaccagaaacagatttggcattgaactagcatttctaccagaaaaggaaatatgagagaaaag |
1455155 |
T |
|
| Q |
413 |
atttatactgaaaacggtatatgagagagaaaaatacacaaggaaggaaagtaaattatgaat-aataaaaaacaattcagatgctgaaccaatagtggc |
511 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
1455154 |
atttataccgaaaacggtatatgagagagaaaaatacacaaggaaggaaagtaaattatgaataaataaaaaacaattcagatgctgaaccaatagtggc |
1455055 |
T |
|
| Q |
512 |
accttgtaagcacgacgctaaactt |
536 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
1455054 |
accttgtaagcacgacgctaaactt |
1455030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 1448798 - 1448448
Alignment:
| Q |
13 |
aatatattcgctgctttcacatcacgatgaataaccttaggatcacaatgatcatgcaagtaagccagccccttggcagctcccagcccaatattcttcc |
112 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| |||||||||| ||| |||||||||||| |
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|
| T |
1448798 |
aatatatttgcagctttcacatcacgatgaataatcttagggtcacaatgatcatgcaagtaagcaagccccctggcagctcctagcgcaatattcttcc |
1448699 |
T |
|
| Q |
113 |
tcattggccaatcaagcggcggttgagaggcattacgttctacaacaacacaaagaatatacatagatggagttataatatgaaactgcaaattttgaaa |
212 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| || |
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|
| T |
1448698 |
gcattggccagtcaagcggcggttgagagtcattacgttctacaaaaacacaatcaatatacatagatgcagttataatatgaaactgcaaattttggaa |
1448599 |
T |
|
| Q |
213 |
ttcaacagtaatagccgagcactcatttgcatttgaaaatttgaggt-acttaagaattttcatgtttgtatctgcgtaaccttcagcaaataggtagga |
311 |
Q |
| |
|
|| ||||||| ||| | ||| ||||||||||||||||||||||||| |||||| ||||||||||| ||||| |||||||| |||| ||||| ||||| |
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|
| T |
1448598 |
tttaacagtag-agcag-gcattcatttgcatttgaaaatttgaggttacttaataattttcatgtctgtatttgcgtaactgccagctaatagttagga |
1448501 |
T |
|
| Q |
312 |
aatactaattattattttttcaatgataaaccaaaataaaccagaaacagatt |
364 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||||||||| ||||||||| ||||| |
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|
| T |
1448500 |
aatactaattgttatgttttcaatgatgaaccaaaattaaccagaaatagatt |
1448448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 13 - 375
Target Start/End: Complemental strand, 1441394 - 1441026
Alignment:
| Q |
13 |
aatatattcgctgctttcacatcacgatgaataaccttaggatcacaatgatcatgcaagtaagccagccccttggcagctcccagcccaatattcttcc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||| |
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|
| T |
1441394 |
aatatattcgctgctttcacatcacgatgaataatcttagggtcacaatgatcatgcaagtaagcaagccccctggcagctcccagcgcaatattcttcc |
1441295 |
T |
|
| Q |
113 |
tcattggccaatcaagcggcggttgagaggcattacgttctacaacaacaca-------aagaatatacatagatggagttataatatgaaactgcaaat |
205 |
Q |
| |
|
||||||||| ||||||||||| |||||| |||||||||||| || |||||| | || ||||||||| |||||||||||||||||||| |||| |
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|
| T |
1441294 |
gcattggccactcaagcggcggctgagagtcattacgttctataataacacaattaaatattaagatacataga-ggagttataatatgaaactggaaat |
1441196 |
T |
|
| Q |
206 |
tttgaaattcaacagtaatagccgagcactcatttgcatttgaaaatttgaggtacttaagaattttcatgtttgtatctgcgtaaccttcagcaaatag |
305 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||||||||||||||||||||| | ||||||||||||||| |||||| | |||| |||| ||||| |
|
|
| T |
1441195 |
tttgaaattcaacattaatagtagagcattcatttgcatttgaaaatttgagctgtttaagaattttcatggttgtatttacgtagatgccagctaatag |
1441096 |
T |
|
| Q |
306 |
gtaggaaatactaattattattttttcaatgataaaccaaaataaaccagaaacagatttggcattgaac |
375 |
Q |
| |
|
||| || | | |||| |||||||||||||| || ||||||||||||||||||||||||| |||||||| |
|
|
| T |
1441095 |
ctagaaagttccaattgttattttttcaatggtagaccaaaataaaccagaaacagattttacattgaac |
1441026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 1435975 - 1435740
Alignment:
| Q |
13 |
aatatattcgctgctttcacatcacgatgaataaccttaggatcacaatgatcatgcaagtaagccagccccttggcagctcccagcccaatattcttcc |
112 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||| |||||| |||||| || |||||||||||| | |||| |||||| ||||| | ||||||| |||| |
|
|
| T |
1435975 |
aatatatttgcagctttcacatcacggtgaataatcttagggtcacaactataatgcaagtaagcaatccccctggcagatcccaacgcaatatttttcc |
1435876 |
T |
|
| Q |
113 |
tcattggccaatcaagcggcggttgagaggcattacgttctacaacaacacaaagaatatacatagatggagttataatatgaaactgcaaattttgaaa |
212 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||||||||||||||||||| || |||||||||||| | ||| || | |||||||| || |||||||| |
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|
| T |
1435875 |
gcattggccactcaagcggaggttgagagccattacgttctacaacaacagaatcaatatacatagacgcggttttagtttgaaactggaacttttgaaa |
1435776 |
T |
|
| Q |
213 |
ttcaacagtaatagccgagcactcatttgcatttgaaaatt |
253 |
Q |
| |
|
||||||| ||| ||||| | ||||||||||||||||| |
|
|
| T |
1435775 |
ttcaacattaa-----gagcattaatttgcatttgaaaatt |
1435740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 1429365 - 1429155
Alignment:
| Q |
13 |
aatatattcgctgctttcacatcacgatgaataaccttaggatcacaatgatcatgcaagtaagccagccccttggcagctcccagcccaatattcttcc |
112 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| |||||| ||||| ||||||||||||||||| ||||| |||||| |||||| |||||||||||| |
|
|
| T |
1429365 |
aatatatttgcagctttcacatcacgatgaataatcttagggtcacagtgatcatgcaagtaagcaagccctctggcagatcccagtgcaatattcttcc |
1429266 |
T |
|
| Q |
113 |
tcattggccaatcaagcggcggttgagaggcattacgttctacaacaacacaaagaatatacatagatggagttataatatgaaactgcaaattttgaaa |
212 |
Q |
| |
|
||||||||| ||||||||||| | | | ||||||||||||||| || || |||| || | | |||| ||||||||||||||||||||||| |
|
|
| T |
1429265 |
gcattggccactcaagcggcggatcaacctcgttacgttctacaacatcaaaatcaatacaccaaaacacagttttaatatgaaactgcaaattttgatt |
1429166 |
T |
|
| Q |
213 |
ttcaacagtaa |
223 |
Q |
| |
|
||||||||||| |
|
|
| T |
1429165 |
ttcaacagtaa |
1429155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 25 - 277
Target Start/End: Original strand, 21019588 - 21019841
Alignment:
| Q |
25 |
gctttcacatcacgatgaataaccttagga---tcacaatgatcatgcaagtaagccagccccttggcagctcccagcccaatattcttcctcattggcc |
121 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| ||| || || |||||||||||| | |||| |||||| ||||| |||||||||||| ||||| || |
|
|
| T |
21019588 |
gctttcacatcacggtgaataatcttaggagggtcataactataatgcaagtaagcaatccccctggcagatcccactgcaatattcttccgcattgtcc |
21019687 |
T |
|
| Q |
122 |
aatcaagcggcggttgagaggcattacgttctacaacaacacaaagaatatacatagatggagttataata---tgaaactgcaaattttgaaattcaac |
218 |
Q |
| |
|
| |||||||| ||||||||| |||||||||||||||||||| || ||||||||||| | ||| || || |||||||| || |||||||||||||| |
|
|
| T |
21019688 |
agtcaagcggaggttgagagtcattacgttctacaacaacagaatcaatatacatagtcgcggttttattagtttgaaactggaacttttgaaattcaac |
21019787 |
T |
|
| Q |
219 |
agtaatagccgagcactcatttgcatttgaaaatttgaggtacttaagaattttcatgt |
277 |
Q |
| |
|
| ||| ||||| | ||||||||||||||||| ||| || |||||||||| ||||| |
|
|
| T |
21019788 |
attaa-----gagcattaatttgcatttgaaaattcgagctatttaagaatttccatgt |
21019841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 520
Target Start/End: Complemental strand, 1440974 - 1440902
Alignment:
| Q |
448 |
acacaaggaaggaaagtaaattatgaataataaaaaacaattcagatgctgaaccaatagtggcaccttgtaa |
520 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||| ||||||| || |||||| ||| ||||||||| |||| |
|
|
| T |
1440974 |
acacaaggaatgaaagtaaattatgaataaataaaatcaattcaaatactgaactaatggtggcacctcgtaa |
1440902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 536
Target Start/End: Complemental strand, 1448383 - 1448296
Alignment:
| Q |
449 |
cacaaggaaggaaagtaaattatgaataataaaaaacaattcagatgctgaaccaatagtggcaccttgtaagcacgacgctaaactt |
536 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||| ||| ||||||||| ||||| | |||| |||| ||||| |||| |||| |
|
|
| T |
1448383 |
cacaaggaaggaaagaaaattatgaataaataaaaacaactcaaatgctgaactaatagagatacctcgtaaacacgatgctacactt |
1448296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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