View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2293_low_7 (Length: 403)
Name: NF2293_low_7
Description: NF2293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2293_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 105 - 388
Target Start/End: Complemental strand, 12204375 - 12204092
Alignment:
| Q |
105 |
tgattagtctacatgcataacatcaattatatttcatttaaaatgttggtatgtgatggcacacaatcaatacacctaaaataaaataatcttaatatat |
204 |
Q |
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| T |
12204375 |
tgattagtctacatgcataacatcaattatatttcatttaaaatgttggtatgtgatggcacacaatcaatacacctaaaataaaataatcttaatatat |
12204276 |
T |
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| Q |
205 |
aactaatttcaaacatttatgccaactatatgagtcccctttatccaccttgaaaggaaacaattatctatatacgattaaaaactgatcgtggaaaaag |
304 |
Q |
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| T |
12204275 |
aactaatttcaaacatttatgccaactatatgagtcccctttatccaccttgaaaggaaacaattatctatatacgattaaaaactgatcgtggaaaaag |
12204176 |
T |
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| Q |
305 |
ggatagaagttatgcacatgagccatttcatacaattttatttgtttcacatcaaagtttttggaactaaggaaggtgataatt |
388 |
Q |
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| T |
12204175 |
ggatagaagttatgcacatgagccatttcatacaattttatctgtttcacatcaaagtttttggaactaaggaaggtgacaatt |
12204092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 12204486 - 12204437
Alignment:
| Q |
1 |
tatacaaacatttggtcactaattcccaataatcattgagaagcacgtga |
50 |
Q |
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| T |
12204486 |
tatacaaacatttggtcactaattcccaataatcattgagaagcacgtga |
12204437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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