View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2293_low_8 (Length: 391)

Name: NF2293_low_8
Description: NF2293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2293_low_8
NF2293_low_8
[»] chr5 (6 HSPs)
chr5 (49-376)||(43322598-43322925)
chr5 (107-158)||(40549293-40549344)
chr5 (103-158)||(42783259-42783314)
chr5 (63-157)||(42564928-42565022)
chr5 (106-176)||(42840513-42840583)
chr5 (109-173)||(42629633-42629697)
[»] chr1 (2 HSPs)
chr1 (102-176)||(51874705-51874779)
chr1 (94-176)||(368801-368883)
[»] chr2 (1 HSPs)
chr2 (189-234)||(44141526-44141571)
[»] scaffold0129 (1 HSPs)
scaffold0129 (103-176)||(33548-33621)
[»] chr3 (1 HSPs)
chr3 (115-176)||(44550492-44550553)
[»] scaffold0054 (1 HSPs)
scaffold0054 (106-178)||(39820-39892)
[»] chr6 (1 HSPs)
chr6 (108-176)||(32960737-32960805)


Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 49 - 376
Target Start/End: Complemental strand, 43322925 - 43322598
Alignment:
Q  49 aagcaaatgttgcacttcttcccaactccaattggacgatgaatgaaaggtattggcccaacaataaagagtttgatccataatttctttacaccgagtt 148  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43322925 aagcaaatgttacccttcttcccaactccaattggacgatgaatgaaaggtatgggcccaacaataaagagtttgatccataatttctttacaccgagtt 43322826  T
Q  149 cacccaaaatcgaaatatgaaaagtagtagcatctggacaatttgagattaaagcaattgactcatttaacaccaccaaacatctctcaatggaataata 248  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43322825 cacccaaaatcgaaatatgaaaagtagtagcatttggacaatttgagattaaagcaattgactcatttaacaccaccaaacatctctcaatggaataata 43322726  T
Q  249 atcacaactttcatccacatctaacaacataggtgttgtgaaaaacaactcgttgacgaagtcaaatgacaccaaacagtcttctttatcatgtgatgaa 348  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43322725 ataacaactttcatccacatctaacaacataggtgttgtgaaaaacaactagttgacgaagtcaaatgacaccaaacagtcttctttatcatgtgatgaa 43322626  T
Q  349 ctgctgctccaccaatgacacactccat 376  Q
    ||| ||||||||||||||||||||||||    
T  43322625 ctgttgctccaccaatgacacactccat 43322598  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 40549344 - 40549293
Alignment:
Q  107 caacaataaagagtttgatccataatttctttacaccgagttcacccaaaat 158  Q
    |||||| |||||||||||||||| ||| ||| ||||||| ||||||||||||    
T  40549344 caacaacaaagagtttgatccatgattccttcacaccgacttcacccaaaat 40549293  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 42783314 - 42783259
Alignment:
Q  103 ggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaat 158  Q
    |||||||||||||||||||| |||||| |||  |||||||  ||||||||||||||    
T  42783314 ggcccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaat 42783259  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 42564928 - 42565022
Alignment:
Q  63 cttcttcccaactccaattggacgatgaatgaaaggtattggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaa 157  Q
    |||||| || |||||||| |||  ||||| | |||| | ||| |||||||| || |||||||||||| ||| ||| ||||| |||||||||||||    
T  42564928 cttctttcccactccaataggaatatgaacgcaaggcagtggtccaacaatgaaaagtttgatccatgattccttgacacctagttcacccaaaa 42565022  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 42840513 - 42840583
Alignment:
Q  106 ccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 176  Q
    ||||||||||||| |||  ||||| |||  |||||||| |||||||||||||| ||||| ||||| |||||    
T  42840513 ccaacaataaagactttagtccatgattcttttacaccaagttcacccaaaattgaaatgtgaaatgtagt 42840583  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 42629633 - 42629697
Alignment:
Q  109 acaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagt 173  Q
    |||||||| |||||||||||| | | ||| || |||| |||||||||||| || |||||||||||    
T  42629633 acaataaaaagtttgatccatgactccttcactccgacttcacccaaaattgatatatgaaaagt 42629697  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 51874705 - 51874779
Alignment:
Q  102 tggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 176  Q
    |||||||||||  || |||||||||||| ||| ||| ||||  |||||||||||||| ||||||| |||||||||    
T  51874705 tggcccaacaaggaaaagtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagt 51874779  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 368883 - 368801
Alignment:
Q  94 aaaggtattggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 176  Q
    ||||||| ||| |||||||| ||||||||||||||| ||| ||| ||||| | |||||| | ||| || || |||||||||||    
T  368883 aaaggtaatggtccaacaatgaagagtttgatccatgattccttcacaccaatttcaccaagaattgatatgtgaaaagtagt 368801  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 44141526 - 44141571
Alignment:
Q  189 atttgagattaaagcaattgactcatttaacaccaccaaacatctc 234  Q
    ||||||||| |||||||||||| ||||||||||||||||| |||||    
T  44141526 atttgagatcaaagcaattgacccatttaacaccaccaaatatctc 44141571  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 33548 - 33621
Alignment:
Q  103 ggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 176  Q
    ||||||| ||||||||||||  ||||  | | ||| ||||| |||||||||||||| ||||| |||||||||||    
T  33548 ggcccaataataaagagtttagtccaagactccttcacaccaagttcacccaaaatagaaatgtgaaaagtagt 33621  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 44550492 - 44550553
Alignment:
Q  115 aagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 176  Q
    ||||||||  ||||||||||||| ||||||| |||||| ||||| || || |||||||||||    
T  44550492 aagagtttagtccataatttcttcacaccgaattcacctaaaattgatatttgaaaagtagt 44550553  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 39820 - 39892
Alignment:
Q  106 ccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagtag 178  Q
    |||||| ||||||||||||||||  ||| ||| |  ||||||||||||||||| |  || |||||||||||||    
T  39820 ccaacagtaaagagtttgatccacgattccttaatgccgagttcacccaaaattgctatgtgaaaagtagtag 39892  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 32960737 - 32960805
Alignment:
Q  108 aacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 176  Q
    |||||||||||||||||||||  ||| ||| | ||||| |||| ||||||| || | ||||||||||||    
T  32960737 aacaataaagagtttgatccaagattccttcataccgatttcatccaaaattgatacatgaaaagtagt 32960805  T

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