View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2293_low_9 (Length: 346)
Name: NF2293_low_9
Description: NF2293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2293_low_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 5 - 346
Target Start/End: Complemental strand, 36255133 - 36254791
Alignment:
| Q |
5 |
ctcgtaagagattgtgaacagtttaggaggagaagcgtgagtttaatgattctaaagacaatcatcgtaataattcaggtgataacaatagcggcaatgt |
104 |
Q |
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| T |
36255133 |
ctcgtaagagattgcgaacagtttaggaggagaagcgtgagtttaatgattctaaagacaatcatcgtaataattcaggtaataacaatagtagcaatgt |
36255034 |
T |
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| Q |
105 |
tgaagaaaattccgataagagtaacagtaatca-gtgcataaggaacagtatttggagcctacatatcaaaataatctactgtcgtatttggaggctaca |
203 |
Q |
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| T |
36255033 |
tgaagaaaattctgataagagtaacagtaatcatgtgcataaggaacagtatttggagcctacatatcgaaataatctactgtcgtatttggaggctaca |
36254934 |
T |
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| Q |
204 |
acaattcaatcaacagacatgctaagccatattgcaaatgcttcaaagtccataacgattcttaaccatcgttcacagtcgtaacttctgatgggggtat |
303 |
Q |
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| T |
36254933 |
acaattcaatcaacagacatgctaagccatattgcaaatgcttcaaagtccataacagttcttaaccatcgttcacagtcgtaacttttgatgggggtat |
36254834 |
T |
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| Q |
304 |
tttatgaagtttgaggtacttgtgagcaatctgaaatgcctaa |
346 |
Q |
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| T |
36254833 |
tttatgaagtttgagatacttgtgaccaatctgaaatgcctaa |
36254791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 36257343 - 36257456
Alignment:
| Q |
1 |
caatctcgtaagagattgtgaacagtttaggaggagaagcgtgagtttaatgattctaaagacaatcatcgtaataattcaggtgataacaatagcggca |
100 |
Q |
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| T |
36257343 |
caatctcgtaagagatcgcgggcagctgaggaggagaggcatgagctgaatgattcgaaagacaatcatcagaataactctggtaataccaatagcagca |
36257442 |
T |
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| Q |
101 |
atgttgaagaaaat |
114 |
Q |
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| T |
36257443 |
atgtcgatgaaaat |
36257456 |
T |
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