View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2294_high_1 (Length: 399)
Name: NF2294_high_1
Description: NF2294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2294_high_1 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 15 - 399
Target Start/End: Original strand, 7309205 - 7309589
Alignment:
| Q |
15 |
aaaaaggaagttcagtttcattagcaatagcatgagcaagtctagttttcccacaaccaggtggtccgtgcagcaaaattcccgtcaatggttccaaacc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7309205 |
aaaaaggaagttcagtttcattagcaatagcatgagcaagtctagttttcccacaaccaggtggtccgtgcagcaaaattcccgtcaatggttccaaacc |
7309304 |
T |
|
| Q |
115 |
taactttttacccaactcagggtaacacagtaaattaagaggcacttccaattccttctttatcttctccatcctattccctgctaaatccttaaacatc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7309305 |
taactttttacccaactcagggtaacacagtaaattaagaggcacttccaattccttctttatcttctccatcctattccctgctaaatccttaaacatc |
7309404 |
T |
|
| Q |
215 |
ggccctttcttaacatcaccactgcggccaacaccggaggctgcattagggatcgaacttttccttaaaacatccggttcctctacttttttgatgtagt |
314 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7309405 |
ggccctttcttaacatcaccactgctgccaacaccggaggctgcattagggatcgaacttttccttaaaacatccggttcctctacttttttgatgtagt |
7309504 |
T |
|
| Q |
315 |
tctcggaatcataattagaggaagctccagtgcccattcttccatatctcattcttccaagatcatcatcatcagcatcagcatc |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
7309505 |
tctcggaatcataattagaggaagctccagtgcccattcttccatatctcattcttccaagatcatcagcatcagcatcatcatc |
7309589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 7299443 - 7299524
Alignment:
| Q |
15 |
aaaaaggaagttcagtttcattagcaatagcatgagcaagtctagttttcccacaaccaggtggtccgtgcagcaaaattcc |
96 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||||| |||||| ||||||| |||||||||| ||| || || | ||||||||| |
|
|
| T |
7299443 |
aaaagggaacttcagcttcattagcaatagcataagcaagcatagtttttccacaaccagatggcccatgtaacaaaattcc |
7299524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 786599 - 786541
Alignment:
| Q |
35 |
ttagcaatagcatgagcaagtctagttttcccacaaccaggtggtccgtgcagcaaaat |
93 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
786599 |
ttagcaatagcatgagcaagtctagtctttccacaaccaggtggtccatgcagcaaaat |
786541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University