View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2294_high_3 (Length: 305)

Name: NF2294_high_3
Description: NF2294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2294_high_3
NF2294_high_3
[»] chr3 (6 HSPs)
chr3 (1-289)||(36496827-36497115)
chr3 (41-138)||(36502332-36502428)
chr3 (76-123)||(36501618-36501665)
chr3 (91-137)||(35653122-35653167)
chr3 (92-144)||(2288429-2288480)
chr3 (82-118)||(5492251-5492287)
[»] chr8 (3 HSPs)
chr8 (47-112)||(36228536-36228601)
chr8 (47-112)||(32318075-32318140)
chr8 (54-137)||(7088901-7088983)
[»] chr1 (5 HSPs)
chr1 (78-118)||(26284645-26284685)
chr1 (77-112)||(19138872-19138907)
chr1 (99-144)||(47693970-47694014)
chr1 (48-112)||(13649499-13649563)
chr1 (82-138)||(15248876-15248931)
[»] chr5 (3 HSPs)
chr5 (76-118)||(39933456-39933498)
chr5 (76-118)||(39933559-39933601)
chr5 (54-138)||(22967147-22967230)
[»] chr4 (2 HSPs)
chr4 (76-137)||(49574078-49574139)
chr4 (78-138)||(46577503-46577563)
[»] chr6 (2 HSPs)
chr6 (92-144)||(8172950-8173002)
chr6 (76-135)||(30373077-30373135)
[»] scaffold0006 (1 HSPs)
scaffold0006 (77-112)||(139308-139343)
[»] chr2 (2 HSPs)
chr2 (76-135)||(3769332-3769390)
chr2 (54-138)||(44944038-44944121)
[»] scaffold0025 (1 HSPs)
scaffold0025 (76-118)||(150370-150412)
[»] chr7 (1 HSPs)
chr7 (76-105)||(17917127-17917156)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 36497115 - 36496827
Alignment:
Q  1 gcggcgagagaagatcacaaggggttgaattgactatatgctgcacttttaataattaaataacacagtaaatactgatctaagggttgtgatttaaccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36497115 gcggcgagagaagatcacaaggggttgaattgactatatgctgcagttttaataattaaataacacagtaaatactgatctaagggttgtgatttaaccc 36497016  T
Q  101 tctcatctctcacaataacaaccactctcacttgatatatatatcatttatcatttaaccacactccaaaatgatcaactgaacattgcgttgatgaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36497015 tctcatctctcacaataacaaccactctcacttgatatatatatcatttatcatttaaccacactccaaaatgatcaactgaacattgcgttgatgaatt 36496916  T
Q  201 taaagtatgacctgtttttgtaatgaaaccctatacttgaaatttgaaggcccagaaattgggtcctgatctatattctccattatatg 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36496915 taaagtatgacctgtttttgtaatgaaaccctatacttgaaatttgaaggcccagaaattgggtcctgatctatattctccattatatg 36496827  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 36502332 - 36502428
Alignment:
Q  41 ctgcacttttaataattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgatat 138  Q
    ||||| |||| | ||||||||| ||||||||| | | ||| || ||||  |||| ||||||||||||||||||||||| |||  ||||||||||||||    
T  36502332 ctgcaatttttaaaattaaatatcacagtaaagattaatccaatggttaggattaaaccctctcatctctcacaataa-aactcctctcacttgatat 36502428  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 36501618 - 36501665
Alignment:
Q  76 tgatctaagggttgtgatttaaccctctcatctctcacaataacaacc 123  Q
    ||||| ||||||||||| |||| |||||||||||||||||||| ||||    
T  36501618 tgatccaagggttgtgacttaatcctctcatctctcacaataaaaacc 36501665  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 35653167 - 35653122
Alignment:
Q  91 gatttaaccctctcatctctcacaataacaaccactctcacttgata 137  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||    
T  35653167 gatttaaccctctcatctctcacaataa-aactcctctcacttgata 35653122  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 2288429 - 2288480
Alignment:
Q  92 atttaaccctctcatctctcacaataacaaccactctcacttgatatatatat 144  Q
    ||||||||||||||||||||||||||| |||  |||| | |||||||||||||    
T  2288429 atttaaccctctcatctctcacaataa-aactcctcttatttgatatatatat 2288480  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 5492251 - 5492287
Alignment:
Q  82 aagggttgtgatttaaccctctcatctctcacaataa 118  Q
    |||||||||||||||||||||||| |||||| |||||    
T  5492251 aagggttgtgatttaaccctctcacctctcataataa 5492287  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 36228601 - 36228536
Alignment:
Q  47 ttttaataattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctca 112  Q
    |||||| | |||| ||||||| |||| | |||||||||||||||||||| ||||||||||||||||    
T  36228601 ttttaaaatttaagtaacacaataaagattgatctaagggttgtgatttcaccctctcatctctca 36228536  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 32318140 - 32318075
Alignment:
Q  47 ttttaataattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctca 112  Q
    |||||| |||||| ||||||| || | | ||||| ||||||||| |||||||||||||||||||||    
T  32318140 ttttaaaaattaagtaacacaatatagattgatccaagggttgtaatttaaccctctcatctctca 32318075  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 7088983 - 7088901
Alignment:
Q  54 aattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgata 137  Q
    ||||||||| || |||||  | ||||| ||||| |||||||||  ||||||| |||||| ||||| ||||||||||||||||||    
T  7088983 aattaaatatcatagtaatgattgatccaagggctgtgatttactcctctcacctctcataataa-aaccactctcacttgata 7088901  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 26284685 - 26284645
Alignment:
Q  78 atctaagggttgtgatttaaccctctcatctctcacaataa 118  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  26284685 atctaagggttgtgatttaaccctctcatctctcataataa 26284645  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 112
Target Start/End: Complemental strand, 19138907 - 19138872
Alignment:
Q  77 gatctaagggttgtgatttaaccctctcatctctca 112  Q
    |||| |||||||||||||||||||||||||||||||    
T  19138907 gatccaagggttgtgatttaaccctctcatctctca 19138872  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 47694014 - 47693970
Alignment:
Q  99 cctctcatctctcacaataacaaccactctcacttgatatatatat 144  Q
    |||||||||||||||||||| |||  ||||||||||||||||||||    
T  47694014 cctctcatctctcacaataa-aactcctctcacttgatatatatat 47693970  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 13649499 - 13649563
Alignment:
Q  48 tttaataattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctca 112  Q
    ||||| |||||| ||||||| | || |  |||| |||||||||||||||||||| ||||||||||    
T  13649499 tttaaaaattaagtaacacaattaagatggatccaagggttgtgatttaaccctatcatctctca 13649563  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 15248931 - 15248876
Alignment:
Q  82 aagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgatat 138  Q
    ||||||| ||||||||||||||||||||||||  ||| || | ||||||||||||||    
T  15248931 aagggttatgatttaaccctctcatctctcactgtaa-aagccctctcacttgatat 15248876  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 39933498 - 39933456
Alignment:
Q  76 tgatctaagggttgtgatttaaccctctcatctctcacaataa 118  Q
    ||||| ||||||| |||||||||||||||||||||||||||||    
T  39933498 tgatcaaagggttatgatttaaccctctcatctctcacaataa 39933456  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 39933559 - 39933601
Alignment:
Q  76 tgatctaagggttgtgatttaaccctctcatctctcacaataa 118  Q
    ||||| ||||||| |||||||||||||| ||||||||||||||    
T  39933559 tgatccaagggttatgatttaaccctcttatctctcacaataa 39933601  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 22967147 - 22967230
Alignment:
Q  54 aattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgatat 138  Q
    ||||||| |||||| |||| | | |||||| |||   ||| |||||||||||||||||||||||| || | ||||||||||||||    
T  22967147 aattaaagaacacaataaaaattaatctaatggtcaggatctaaccctctcatctctcacaataaaaaac-ctctcacttgatat 22967230  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 49574139 - 49574078
Alignment:
Q  76 tgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgata 137  Q
    |||||||||||||||||||||||||||||| ||||||   ||| |||  |||||||||||||    
T  49574139 tgatctaagggttgtgatttaaccctctcacctctcattttaagaactcctctcacttgata 49574078  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 46577563 - 46577503
Alignment:
Q  78 atctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgatat 138  Q
    |||||||||||  |||| |||||||||| |||||| ||||| || ||||||||||||||||    
T  46577563 atctaagggttaggattcaaccctctcacctctcataataaaaagcactctcacttgatat 46577503  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 8173002 - 8172950
Alignment:
Q  92 atttaaccctctcatctctcacaataacaaccactctcacttgatatatatat 144  Q
    |||| ||||||||||||||||| |||| || | ||||||||||||||||||||    
T  8173002 atttcaccctctcatctctcaccataaaaatctctctcacttgatatatatat 8172950  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 30373077 - 30373135
Alignment:
Q  76 tgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttga 135  Q
    ||||| ||||||||| ||||||| ||||||||||||| ||||| |||| |||||||||||    
T  30373077 tgatccaagggttgtaatttaacactctcatctctcataataaaaacc-ctctcacttga 30373135  T

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Target: scaffold0006 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 112
Target Start/End: Original strand, 139308 - 139343
Alignment:
Q  77 gatctaagggttgtgatttaaccctctcatctctca 112  Q
    |||| |||||||||||||||||||||||||||||||    
T  139308 gatccaagggttgtgatttaaccctctcatctctca 139343  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 3769332 - 3769390
Alignment:
Q  76 tgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttga 135  Q
    ||||| ||||||||| | ||||| ||||||||||||||||||| |||| |||||||||||    
T  3769332 tgatccaagggttgtaacttaacactctcatctctcacaataaaaacc-ctctcacttga 3769390  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 44944038 - 44944121
Alignment:
Q  54 aattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgatat 138  Q
    ||||||| |||||| |||| | | |||||| |||   ||| |||||||||||||||||||||||| || || |||||||||||||    
T  44944038 aattaaagaacacaataaaaattaatctaatggtcaggatctaaccctctcatctctcacaataaaaaaca-tctcacttgatat 44944121  T

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Target: scaffold0025 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 150412 - 150370
Alignment:
Q  76 tgatctaagggttgtgatttaaccctctcatctctcacaataa 118  Q
    ||||| ||||||| || ||||||||||||||||||||||||||    
T  150412 tgatcgaagggttatggtttaaccctctcatctctcacaataa 150370  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 105
Target Start/End: Complemental strand, 17917156 - 17917127
Alignment:
Q  76 tgatctaagggttgtgatttaaccctctca 105  Q
    ||||||||||||||||||||||||||||||    
T  17917156 tgatctaagggttgtgatttaaccctctca 17917127  T

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