View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2294_high_4 (Length: 304)
Name: NF2294_high_4
Description: NF2294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2294_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 130 - 291
Target Start/End: Original strand, 39758149 - 39758310
Alignment:
| Q |
130 |
aagttcattttcttttttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattctcatccacaatgccttgcaattcattttcctta |
229 |
Q |
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| T |
39758149 |
aagttcattttcttttttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattctcatccacaatgccttgcaattcattttcctta |
39758248 |
T |
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| Q |
230 |
tccattaatttctccttcaactcctcaatttcggatttctttctatccaattcggattccct |
291 |
Q |
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| T |
39758249 |
tccatcaatttctccttcaactcctcaattttggatttctttctatccaattcggattccct |
39758310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 45 - 291
Target Start/End: Original strand, 39763800 - 39764046
Alignment:
| Q |
45 |
atatgctttgcaatgtggtctccttatccatcaattcacccttcaataccgcaacatatttgtctaaccttttaagctccttgttaagttcattttcttt |
144 |
Q |
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| T |
39763800 |
atatgttttgcagtgttgtctccttatccatcatttcacccttcaatgccactacatattcgtctaaccttttaagttccttcttaaattctagttcttt |
39763899 |
T |
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| Q |
145 |
tttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattctcatccacaatgccttgcaattcattttccttatccattaatttctcc |
244 |
Q |
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| T |
39763900 |
tttcgatgacagtgacacacttttttcaagcttcaaattcaacctctcattctcattcacaataccttgcaactcattttccttatccatcagtttctct |
39763999 |
T |
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| Q |
245 |
ttcaactcctcaatttcggatttctttctatccaattcggattccct |
291 |
Q |
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| T |
39764000 |
ttcaactcctcaatttcggctttctttctttccaattcggactccct |
39764046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 39754778 - 39754895
Alignment:
| Q |
18 |
atcagcatgtgtgaatgtgaacctgttatatgctttgcaatgtggtctccttatccatcaattcacccttcaataccgcaacatatttgtctaacctttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
39754778 |
atcagcatgtgtgaatgtgaacctgttatatgctttgcaatgtggtctccttatccatcaattcacccttcaataccgccacatatttgtccaacctttt |
39754877 |
T |
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| Q |
118 |
aagctccttgttaagttc |
135 |
Q |
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| T |
39754878 |
aagctccttgttaagttc |
39754895 |
T |
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